Wall clock time and date at job start Tue Mar 31 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39090 * 120.56676 * 146.21666 * 3 2 1 5 5 C 1.39375 * 119.80628 * 180.02562 * 4 3 2 6 6 C 1.48006 * 119.50013 * 179.97438 * 5 4 3 7 7 C 1.39606 * 120.12507 * 359.72984 * 6 5 4 8 8 C 1.37905 * 119.86354 * 179.74167 * 7 6 5 9 9 C 1.38517 * 120.13242 * 0.52930 * 8 7 6 10 10 Cl 1.73599 * 119.87067 * 179.74484 * 9 8 7 11 11 C 1.38521 * 120.25963 * 359.72223 * 9 8 7 12 12 C 1.37907 * 120.12841 * 0.02562 * 11 9 8 13 13 C 1.39980 * 121.00262 * 0.02562 * 5 4 3 14 14 C 1.36006 * 121.19414 * 359.66371 * 13 5 4 15 15 C 1.41047 * 120.10191 * 0.62061 * 14 13 5 16 16 C 1.40448 * 120.48473 * 179.68981 * 15 14 13 17 17 H 1.08001 * 119.99962 * 205.22390 * 16 15 14 18 18 C 1.40300 * 120.00179 * 25.22635 * 16 15 14 19 19 N 1.30638 * 119.99817 * 17.05251 * 18 16 15 20 20 Si 1.86794 * 120.00109 * 197.05056 * 18 16 15 21 21 H 1.48501 * 109.47220 * 265.18185 * 20 18 16 22 22 H 1.48502 * 109.47090 * 25.18124 * 20 18 16 23 23 H 1.48496 * 109.47250 * 145.18137 * 20 18 16 24 24 H 1.07997 * 120.09441 * 0.03972 * 4 3 2 25 25 H 1.08001 * 120.06750 * 359.97438 * 7 6 5 26 26 H 1.08002 * 119.93198 * 180.25241 * 8 7 6 27 27 H 1.08000 * 119.93391 * 180.02562 * 11 9 8 28 28 H 1.07996 * 120.06431 * 179.97438 * 12 11 9 29 29 H 1.08001 * 119.40485 * 179.97438 * 13 5 4 30 30 H 1.08001 * 119.95272 * 180.30923 * 14 13 5 31 31 H 0.97003 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2749 0.9964 -0.6659 5 6 4.6685 0.9813 -0.6561 6 6 5.4139 2.0438 -1.3674 7 6 4.7235 3.0491 -2.0470 8 6 5.4235 4.0395 -2.7036 9 6 6.8086 4.0321 -2.6988 10 17 7.6828 5.2784 -3.5330 11 6 7.4990 3.0342 -2.0306 12 6 6.8099 2.0415 -1.3662 13 6 5.3740 -0.0241 0.0154 14 6 4.7241 -1.0137 0.6849 15 6 3.3142 -1.0489 0.7014 16 6 2.6349 -2.0708 1.3847 17 1 1.6348 -2.3481 1.0858 18 6 3.2555 -2.7314 2.4556 19 7 4.2997 -2.2003 3.0338 20 14 2.5887 -4.3702 3.0548 21 1 1.6608 -4.1413 4.1914 22 1 1.8604 -5.0424 1.9489 23 1 3.7147 -5.2296 3.5004 24 1 2.7453 1.7790 -1.1889 25 1 3.6436 3.0533 -2.0555 26 1 4.8905 4.8201 -3.2262 27 1 8.5789 3.0337 -2.0299 28 1 7.3491 1.2638 -0.8459 29 1 6.4538 -0.0109 0.0060 30 1 5.2885 -1.7767 1.2004 31 1 4.7285 -2.6569 3.7745 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236088672.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:59 Heat of formation + Delta-G solvation = 48.243035 kcal Electronic energy + Delta-G solvation = -17774.799813 eV Core-core repulsion = 14817.857812 eV Total energy + Delta-G solvation = -2956.942001 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.17303 -37.62652 -36.22294 -35.23010 -34.38475 -31.57132 -31.06358 -29.88596 -28.86724 -25.68913 -23.30695 -22.46026 -21.45432 -20.47706 -18.05646 -17.39867 -16.63787 -15.75957 -15.04744 -14.70200 -14.57108 -13.76950 -13.47340 -13.33229 -13.30447 -12.96941 -12.81601 -12.21866 -12.07876 -11.81369 -11.71320 -11.61192 -11.49423 -11.19521 -11.13057 -10.86225 -10.67863 -10.59980 -10.11076 -9.83042 -9.69662 -8.77919 -8.70151 -7.91937 -7.46742 -7.27044 -4.87480 1.24420 1.62190 2.09485 2.37798 2.56104 2.80466 2.84820 2.93872 3.53834 3.78055 3.83958 4.26725 4.34301 5.02755 5.11447 5.19951 5.31167 5.48339 5.57736 5.69727 5.80670 5.95898 6.16228 6.26926 6.46118 6.52804 6.56218 6.61987 6.68492 6.93890 7.06048 7.11340 7.40841 7.49359 7.63971 7.70548 8.03472 8.20232 8.36702 8.68987 9.50935 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.003675 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.832706 B = 7618.145564 C = 8498.888214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.298 3.702 3 C -0.187 4.187 4 C 0.004 3.996 5 C -0.211 4.211 6 C 0.030 3.970 7 C -0.137 4.137 8 C -0.097 4.097 9 C -0.074 4.074 10 Cl -0.095 7.095 11 C -0.098 4.098 12 C -0.134 4.134 13 C -0.055 4.055 14 C -0.165 4.165 15 C 0.154 3.846 16 C -0.410 4.410 17 H 0.090 0.910 18 C 0.073 3.927 19 N -0.748 5.748 20 Si 0.918 3.082 21 H -0.263 1.263 22 H -0.253 1.253 23 H -0.268 1.268 24 H 0.104 0.896 25 H 0.128 0.872 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 4.226 -4.504 9.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.012 4.012 3 C -0.193 4.193 4 C -0.017 4.017 5 C -0.213 4.213 6 C 0.030 3.970 7 C -0.156 4.156 8 C -0.116 4.116 9 C -0.100 4.100 10 Cl -0.066 7.066 11 C -0.117 4.117 12 C -0.152 4.152 13 C -0.074 4.074 14 C -0.184 4.184 15 C 0.148 3.852 16 C -0.436 4.436 17 H 0.108 0.892 18 C -0.152 4.152 19 N -0.369 5.369 20 Si 0.740 3.260 21 H -0.188 1.188 22 H -0.177 1.177 23 H -0.192 1.192 24 H 0.122 0.878 25 H 0.146 0.854 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.148 0.852 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.954 4.302 -4.361 8.542 hybrid contribution 0.363 -0.487 0.330 0.691 sum 6.317 3.815 -4.031 8.409 Atomic orbital electron populations 1.81039 1.12654 1.11118 1.13463 1.25730 0.92659 0.91545 0.91228 1.16773 0.83310 1.02265 1.16946 1.20633 0.92835 0.94524 0.93719 1.17736 0.91810 1.00293 1.11417 1.19038 0.92566 0.92803 0.92614 1.21172 1.00040 0.94839 0.99505 1.20843 0.91823 0.99142 0.99806 1.20751 0.92200 0.93815 1.03250 1.98321 1.76918 1.53641 1.77766 1.20855 0.99742 0.93735 0.97323 1.21168 0.93719 0.99086 1.01212 1.20514 0.97963 0.93696 0.95197 1.20921 0.93654 1.00684 1.03181 1.18526 0.91694 0.88026 0.86944 1.19926 1.01844 1.12072 1.09739 0.89186 1.26224 0.93914 0.99540 0.95571 1.69705 1.15384 1.36191 1.15602 0.86083 0.79886 0.79823 0.80166 1.18787 1.17671 1.19196 0.87773 0.85375 0.85829 0.85799 0.85169 0.88248 0.85529 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.67 18.54 41.84 0.78 -10.90 16 2 C 0.30 6.69 14.30 -22.47 -0.32 6.37 16 3 C -0.19 -4.07 5.93 -104.27 -0.62 -4.69 16 4 C 0.00 0.07 9.12 -38.84 -0.35 -0.28 16 5 C -0.21 -3.96 5.88 -104.82 -0.62 -4.58 16 6 C 0.03 0.50 5.88 -104.87 -0.62 -0.12 16 7 C -0.14 -2.08 9.41 -39.19 -0.37 -2.45 16 8 C -0.10 -1.35 9.81 -39.60 -0.39 -1.74 16 9 C -0.07 -1.02 6.33 -39.37 -0.25 -1.27 16 10 Cl -0.09 -1.18 28.95 -51.86 -1.50 -2.68 16 11 C -0.10 -1.34 9.81 -39.60 -0.39 -1.73 16 12 C -0.13 -2.00 9.42 -39.19 -0.37 -2.36 16 13 C -0.05 -1.05 9.30 -39.73 -0.37 -1.42 16 14 C -0.17 -3.52 8.63 -39.32 -0.34 -3.86 16 15 C 0.15 3.50 5.73 -104.61 -0.60 2.90 16 16 C -0.41 -9.38 8.55 -37.98 -0.32 -9.71 16 17 H 0.09 2.09 7.39 -52.49 -0.39 1.70 16 18 C 0.07 1.53 5.16 -17.28 -0.09 1.44 16 19 N -0.75 -15.94 10.96 55.57 0.61 -15.33 16 20 Si 0.92 15.99 29.59 -169.99 -5.03 10.96 16 21 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 22 H -0.25 -4.48 7.11 56.52 0.40 -4.08 16 23 H -0.27 -4.46 7.11 56.52 0.40 -4.06 16 24 H 0.10 1.79 6.13 -52.49 -0.32 1.47 16 25 H 0.13 1.80 6.15 -52.49 -0.32 1.47 16 26 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 27 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.13 1.78 6.13 -52.49 -0.32 1.46 16 29 H 0.10 1.65 6.09 -52.49 -0.32 1.33 16 30 H 0.13 2.72 6.19 -52.49 -0.32 2.40 16 31 H 0.29 5.57 8.29 -40.82 -0.34 5.24 16 LS Contribution 295.10 15.07 4.45 4.45 Total: -1.00 -23.55 295.10 -8.69 -32.24 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -1.98 Total: 4.75 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -6.01 Total: -23.49 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 1.38 Total: -26.23 kcal Atomic # 14 Polarization: 15.99 SS G_CDS: -5.03 Total: 10.96 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.50 Total: -2.68 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -23.55 -8.69 -32.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088672.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.487 kcal (2) G-P(sol) polarization free energy of solvation -23.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds