Wall clock time and date at job start Tue Mar 31 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39090 * 120.56676 * 146.21666 * 3 2 1 5 5 C 1.39375 * 119.80628 * 180.02562 * 4 3 2 6 6 C 1.48006 * 119.50013 * 179.97438 * 5 4 3 7 7 C 1.39606 * 120.12507 * 359.72984 * 6 5 4 8 8 C 1.37905 * 119.86354 * 179.74167 * 7 6 5 9 9 C 1.38517 * 120.13242 * 0.52930 * 8 7 6 10 10 Cl 1.73599 * 119.87067 * 179.74484 * 9 8 7 11 11 C 1.38521 * 120.25963 * 359.72223 * 9 8 7 12 12 C 1.37907 * 120.12841 * 0.02562 * 11 9 8 13 13 C 1.39980 * 121.00262 * 0.02562 * 5 4 3 14 14 C 1.36006 * 121.19414 * 359.66371 * 13 5 4 15 15 C 1.41047 * 120.10191 * 0.62061 * 14 13 5 16 16 C 1.40448 * 120.48473 * 179.68981 * 15 14 13 17 17 H 1.08001 * 119.99962 * 205.22390 * 16 15 14 18 18 C 1.40300 * 120.00179 * 25.22635 * 16 15 14 19 19 N 1.30638 * 119.99817 * 17.05251 * 18 16 15 20 20 Si 1.86794 * 120.00109 * 197.05056 * 18 16 15 21 21 H 1.48501 * 109.47220 * 265.18185 * 20 18 16 22 22 H 1.48502 * 109.47090 * 25.18124 * 20 18 16 23 23 H 1.48496 * 109.47250 * 145.18137 * 20 18 16 24 24 H 1.07997 * 120.09441 * 0.03972 * 4 3 2 25 25 H 1.08001 * 120.06750 * 359.97438 * 7 6 5 26 26 H 1.08002 * 119.93198 * 180.25241 * 8 7 6 27 27 H 1.08000 * 119.93391 * 180.02562 * 11 9 8 28 28 H 1.07996 * 120.06431 * 179.97438 * 12 11 9 29 29 H 1.08001 * 119.40485 * 179.97438 * 13 5 4 30 30 H 1.08001 * 119.95272 * 180.30923 * 14 13 5 31 31 H 0.97003 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2749 0.9964 -0.6659 5 6 4.6685 0.9813 -0.6561 6 6 5.4139 2.0438 -1.3674 7 6 4.7235 3.0491 -2.0470 8 6 5.4235 4.0395 -2.7036 9 6 6.8086 4.0321 -2.6988 10 17 7.6828 5.2784 -3.5330 11 6 7.4990 3.0342 -2.0306 12 6 6.8099 2.0415 -1.3662 13 6 5.3740 -0.0241 0.0154 14 6 4.7241 -1.0137 0.6849 15 6 3.3142 -1.0489 0.7014 16 6 2.6349 -2.0708 1.3847 17 1 1.6348 -2.3481 1.0858 18 6 3.2555 -2.7314 2.4556 19 7 4.2997 -2.2003 3.0338 20 14 2.5887 -4.3702 3.0548 21 1 1.6608 -4.1413 4.1914 22 1 1.8604 -5.0424 1.9489 23 1 3.7147 -5.2296 3.5004 24 1 2.7453 1.7790 -1.1889 25 1 3.6436 3.0533 -2.0555 26 1 4.8905 4.8201 -3.2262 27 1 8.5789 3.0337 -2.0299 28 1 7.3491 1.2638 -0.8459 29 1 6.4538 -0.0109 0.0060 30 1 5.2885 -1.7767 1.2004 31 1 4.7285 -2.6569 3.7745 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236088672.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:58 Heat of formation + Delta-G solvation = 40.880227 kcal Electronic energy + Delta-G solvation = -17775.119089 eV Core-core repulsion = 14817.857812 eV Total energy + Delta-G solvation = -2957.261277 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45538 -39.08225 -37.35327 -36.94612 -35.90578 -32.99980 -32.32802 -31.34433 -30.29503 -27.19966 -24.69966 -23.84951 -22.81077 -21.89194 -19.61755 -18.86658 -17.90336 -17.26867 -16.34570 -16.02300 -15.96651 -15.23822 -14.80491 -14.66690 -14.64155 -14.34783 -14.32434 -13.68201 -13.65481 -13.48801 -13.24071 -12.97112 -12.90561 -12.55253 -12.38530 -12.17154 -12.03559 -11.79105 -11.64361 -11.28922 -11.20667 -10.06889 -9.89347 -9.51590 -8.98687 -8.74728 -6.52543 -0.01465 0.45785 0.49874 1.10599 1.29367 1.36826 1.48252 1.54137 2.01232 2.11337 2.33739 2.60130 2.98385 3.53441 3.68777 3.94270 4.05002 4.14217 4.27978 4.49001 4.54971 4.59842 4.88383 4.93554 5.04199 5.13947 5.18399 5.31754 5.40002 5.45724 5.57790 5.81458 5.87753 6.02782 6.06819 6.15757 6.41664 6.57488 6.75084 6.94280 7.99769 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.003675 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.832706 B = 7618.145564 C = 8498.888214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C 0.304 3.696 3 C -0.210 4.210 4 C -0.002 4.002 5 C -0.199 4.199 6 C 0.002 3.998 7 C -0.137 4.137 8 C -0.101 4.101 9 C -0.071 4.071 10 Cl -0.079 7.079 11 C -0.100 4.100 12 C -0.130 4.130 13 C -0.051 4.051 14 C -0.180 4.180 15 C 0.134 3.866 16 C -0.449 4.449 17 H 0.073 0.927 18 C 0.045 3.955 19 N -0.772 5.772 20 Si 0.978 3.022 21 H -0.265 1.265 22 H -0.262 1.262 23 H -0.250 1.250 24 H 0.125 0.875 25 H 0.136 0.864 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.142 0.858 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.369 5.421 -5.351 12.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.207 5.207 2 C -0.004 4.004 3 C -0.216 4.216 4 C -0.022 4.022 5 C -0.200 4.200 6 C 0.002 3.998 7 C -0.155 4.155 8 C -0.119 4.119 9 C -0.097 4.097 10 Cl -0.050 7.050 11 C -0.118 4.118 12 C -0.149 4.149 13 C -0.070 4.070 14 C -0.200 4.200 15 C 0.128 3.872 16 C -0.475 4.475 17 H 0.091 0.909 18 C -0.178 4.178 19 N -0.394 5.394 20 Si 0.798 3.202 21 H -0.189 1.189 22 H -0.185 1.185 23 H -0.174 1.174 24 H 0.143 0.857 25 H 0.153 0.847 26 H 0.163 0.837 27 H 0.165 0.835 28 H 0.160 0.840 29 H 0.145 0.855 30 H 0.138 0.862 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.874 5.518 -5.218 10.940 hybrid contribution -0.021 -0.570 0.400 0.697 sum 7.853 4.948 -4.818 10.458 Atomic orbital electron populations 1.81010 1.13138 1.11988 1.14540 1.25950 0.92889 0.90940 0.90659 1.16971 0.82996 1.03224 1.18368 1.20859 0.93370 0.94411 0.93593 1.18023 0.91726 1.00252 1.09993 1.19026 0.93371 0.93190 0.94255 1.21324 1.00627 0.94595 0.98940 1.21075 0.92067 0.99256 0.99542 1.20998 0.92540 0.93870 1.02293 1.98336 1.76512 1.52844 1.77310 1.21112 1.01009 0.93084 0.96602 1.21345 0.93113 0.99555 1.00838 1.20815 0.99435 0.92816 0.93953 1.20919 0.93166 1.01577 1.04295 1.18799 0.92596 0.88400 0.87397 1.19968 1.01774 1.14090 1.11692 0.90875 1.26807 0.94085 1.01867 0.95013 1.69690 1.16169 1.37330 1.16219 0.85217 0.79552 0.76355 0.79079 1.18941 1.18546 1.17357 0.85733 0.84665 0.83745 0.83454 0.84028 0.85530 0.86169 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.09 18.54 19.00 0.35 -24.74 16 2 C 0.30 14.09 14.30 88.33 1.26 15.35 16 3 C -0.21 -9.35 5.93 -19.63 -0.12 -9.47 16 4 C 0.00 -0.07 9.12 22.75 0.21 0.14 16 5 C -0.20 -7.21 5.88 -19.99 -0.12 -7.33 16 6 C 0.00 0.06 5.88 -20.03 -0.12 -0.06 16 7 C -0.14 -3.78 9.41 22.52 0.21 -3.57 16 8 C -0.10 -2.47 9.81 22.26 0.22 -2.25 16 9 C -0.07 -1.71 6.33 22.40 0.14 -1.57 16 10 Cl -0.08 -1.69 28.95 -2.72 -0.08 -1.76 16 11 C -0.10 -2.37 9.81 22.26 0.22 -2.15 16 12 C -0.13 -3.50 9.42 22.52 0.21 -3.28 16 13 C -0.05 -1.92 9.30 22.17 0.21 -1.72 16 14 C -0.18 -7.80 8.63 22.44 0.19 -7.61 16 15 C 0.13 6.29 5.73 -19.86 -0.11 6.17 16 16 C -0.45 -21.52 8.55 23.31 0.20 -21.32 16 17 H 0.07 3.61 7.39 -2.91 -0.02 3.59 16 18 C 0.05 1.95 5.16 85.37 0.44 2.39 16 19 N -0.77 -33.49 10.96 21.89 0.24 -33.25 16 20 Si 0.98 33.31 29.59 68.60 2.03 35.34 16 21 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 22 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 23 H -0.25 -7.73 7.11 99.48 0.71 -7.02 16 24 H 0.12 4.17 6.13 -2.91 -0.02 4.15 16 25 H 0.14 3.48 6.15 -2.91 -0.02 3.46 16 26 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 27 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 28 H 0.14 3.40 6.13 -2.91 -0.02 3.38 16 29 H 0.13 3.94 6.09 -2.91 -0.02 3.92 16 30 H 0.12 5.28 6.19 -2.91 -0.02 5.26 16 31 H 0.30 11.58 8.29 -92.71 -0.77 10.81 16 Total: -1.00 -50.96 295.10 6.78 -44.18 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 1.19 Total: 16.50 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 3.05 Total: -36.27 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.59 Total: -57.98 kcal Atomic # 14 Polarization: 33.31 SS G_CDS: 2.03 Total: 35.34 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.76 kcal Total: -50.96 6.78 -44.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088672.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.058 kcal (2) G-P(sol) polarization free energy of solvation -50.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds