Wall clock time and date at job start Tue Mar 31 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86797 * 120.00366 * 2 1 4 4 H 1.48500 * 109.46907 * 270.00458 * 3 2 1 5 5 H 1.48507 * 109.46708 * 29.99878 * 3 2 1 6 6 H 1.48500 * 109.47212 * 150.00028 * 3 2 1 7 7 C 1.39900 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99701 * 162.91245 * 7 2 1 9 9 C 1.41368 * 120.00294 * 342.90891 * 7 2 1 10 10 C 1.40794 * 120.57708 * 155.68249 * 9 7 2 11 11 N 1.31506 * 120.68733 * 180.02562 * 10 9 7 12 12 C 1.32164 * 122.06594 * 359.97438 * 11 10 9 13 13 F 1.35103 * 119.45089 * 180.02562 * 12 11 10 14 14 C 1.40037 * 121.08883 * 0.02790 * 12 11 10 15 15 C 1.48483 * 120.41300 * 179.97438 * 14 12 11 16 16 C 1.40842 * 126.22445 * 129.97180 * 15 14 12 17 17 N 1.30679 * 108.10178 * 179.97438 * 16 15 14 18 18 N 1.40009 * 108.52815 * 0.02562 * 17 16 15 19 19 C 1.46500 * 125.89771 * 179.97438 * 18 17 16 20 20 F 1.39898 * 109.47238 * 120.02542 * 19 18 17 21 21 F 1.39897 * 109.47029 * 240.02656 * 19 18 17 22 22 C 1.34856 * 108.20455 * 359.97438 * 18 17 16 23 23 C 1.38933 * 119.17182 * 0.24651 * 14 12 11 24 24 H 0.96998 * 119.99537 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.65863 * 359.97438 * 10 9 7 26 26 H 1.07997 * 125.94211 * 0.02562 * 16 15 14 27 27 H 1.08999 * 109.46973 * 0.02562 * 19 18 17 28 28 H 1.07997 * 126.19535 * 180.02562 * 22 18 17 29 29 H 1.07995 * 120.92875 * 179.70539 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4901 2.0463 -1.4001 5 1 1.4401 2.6526 0.7001 6 1 3.5403 1.4400 0.7000 7 6 2.0081 -1.2116 -0.0005 8 1 3.0524 -1.2321 -0.2754 9 6 1.3481 -2.4090 0.3587 10 6 1.8221 -3.6532 -0.0990 11 7 1.2096 -4.7684 0.2335 12 6 0.1349 -4.7762 1.0027 13 9 -0.4523 -5.9530 1.3117 14 6 -0.4052 -3.5847 1.5026 15 6 -1.6135 -3.6109 2.3651 16 6 -1.7632 -2.9650 3.6077 17 7 -2.9629 -3.2228 4.0573 18 7 -3.6210 -4.0370 3.1277 19 6 -4.9866 -4.5525 3.2523 20 9 -5.7581 -4.0934 2.1794 21 9 -4.9598 -5.9512 3.2427 22 6 -2.7807 -4.2648 2.0978 23 6 0.2004 -2.3775 1.1767 24 1 -0.4849 0.8401 0.0004 25 1 2.6975 -3.6922 -0.7304 26 1 -1.0168 -2.3613 4.1024 27 1 -5.4225 -4.2039 4.1886 28 1 -2.9933 -4.8573 1.2203 29 1 -0.1950 -1.4416 1.5427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238869167.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:47 Heat of formation + Delta-G solvation = -35.221680 kcal Electronic energy + Delta-G solvation = -21239.760765 eV Core-core repulsion = 17328.926308 eV Total energy + Delta-G solvation = -3910.834457 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.38804 -47.56419 -47.49143 -40.90287 -38.21713 -34.20527 -33.00546 -31.52862 -30.37824 -28.66107 -25.72608 -25.53798 -22.61839 -21.87154 -21.05881 -20.23726 -18.19596 -17.85508 -17.63337 -17.13136 -16.61240 -15.89118 -15.25307 -14.94905 -14.66454 -14.46269 -14.07257 -13.99725 -13.82492 -13.50073 -13.28309 -12.74687 -12.45292 -12.27170 -12.16570 -11.86249 -11.78506 -11.40608 -11.22719 -10.86934 -10.72052 -10.20733 -9.63594 -9.50590 -9.07529 -8.44611 -8.02381 -7.46661 -7.03427 -4.64398 1.74191 1.89794 2.22209 2.61749 2.94516 2.95945 3.02546 3.18512 3.42283 3.73135 4.03937 4.34753 4.56073 4.89809 5.04173 5.15848 5.34227 5.56459 5.78742 6.04518 6.15807 6.50833 6.61099 6.74578 6.82605 6.92666 6.97855 7.45136 7.61958 7.66159 7.75548 8.20214 8.46407 8.46901 9.21496 9.87825 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.005088 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.597679 B = 5502.304592 C = 6448.006662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.440 4.440 8 H 0.088 0.912 9 C 0.057 3.943 10 C 0.008 3.992 11 N -0.489 5.489 12 C 0.159 3.841 13 F -0.147 7.147 14 C -0.065 4.065 15 C -0.149 4.149 16 C 0.090 3.910 17 N -0.290 5.290 18 N -0.440 5.440 19 C 0.506 3.494 20 F -0.184 7.184 21 F -0.184 7.184 22 C 0.077 3.923 23 C -0.099 4.099 24 H 0.287 0.713 25 H 0.138 0.862 26 H 0.194 0.806 27 H 0.162 0.838 28 H 0.177 0.823 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.991 -1.066 5.612 9.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.469 4.469 8 H 0.106 0.894 9 C 0.052 3.948 10 C -0.153 4.153 11 N -0.200 5.200 12 C 0.005 3.995 13 F -0.127 7.127 14 C -0.069 4.069 15 C -0.160 4.160 16 C -0.099 4.099 17 N -0.108 5.108 18 N -0.232 5.232 19 C 0.371 3.629 20 F -0.166 7.166 21 F -0.166 7.166 22 C -0.064 4.064 23 C -0.124 4.124 24 H 0.098 0.902 25 H 0.155 0.845 26 H 0.211 0.789 27 H 0.179 0.821 28 H 0.194 0.806 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.957 -1.659 6.238 10.246 hybrid contribution 0.370 1.069 -0.642 1.301 sum -7.587 -0.589 5.596 9.446 Atomic orbital electron populations 1.69783 1.07731 1.30092 1.33101 1.26014 0.94835 1.01838 0.91975 0.86194 0.80616 0.79863 0.79541 1.19212 1.19876 1.18137 1.19555 0.98137 0.90522 1.38693 0.89400 1.18479 0.92186 0.93788 0.90350 1.22289 1.02148 0.86594 1.04273 1.66275 1.07587 1.33828 1.12344 1.17544 0.95981 0.79667 1.06321 1.91392 1.82618 1.46795 1.91927 1.18403 0.95034 0.93275 1.00228 1.18911 0.94878 1.05064 0.97120 1.24192 0.93805 0.97713 0.94196 1.77171 1.08067 1.12190 1.13412 1.49399 1.12249 1.43493 1.18072 1.20777 0.77215 0.74649 0.90291 1.93126 1.74258 1.88562 1.60635 1.93125 1.95903 1.30418 1.97130 1.22600 0.90297 1.00150 0.93351 1.21668 0.97301 0.95445 0.98026 0.90213 0.84459 0.78928 0.82135 0.80616 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.22 10.92 55.54 0.61 -17.62 15 2 C 0.07 1.64 5.18 -17.34 -0.09 1.55 15 3 Si 0.91 16.71 29.59 -169.99 -5.03 11.68 15 4 H -0.27 -4.87 7.11 56.52 0.40 -4.47 15 5 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 6 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 7 C -0.44 -10.33 9.08 -37.77 -0.34 -10.67 15 8 H 0.09 1.94 7.90 -52.49 -0.41 1.52 15 9 C 0.06 1.37 5.59 -106.71 -0.60 0.78 15 10 C 0.01 0.20 10.96 -16.73 -0.18 0.02 15 11 N -0.49 -12.00 10.34 -12.59 -0.13 -12.13 15 12 C 0.16 3.79 8.38 -16.73 -0.14 3.65 15 13 F -0.15 -3.38 16.37 2.25 0.04 -3.34 15 14 C -0.06 -1.45 5.76 -104.74 -0.60 -2.05 15 15 C -0.15 -2.91 5.39 -105.34 -0.57 -3.48 15 16 C 0.09 1.55 11.94 -17.06 -0.20 1.34 15 17 N -0.29 -4.78 12.54 30.80 0.39 -4.39 15 18 N -0.44 -6.94 3.87 -66.39 -0.26 -7.20 15 19 C 0.51 5.94 6.38 59.85 0.38 6.32 15 20 F -0.18 -2.32 17.48 2.25 0.04 -2.28 15 21 F -0.18 -2.30 17.48 2.25 0.04 -2.26 15 22 C 0.08 1.37 10.74 -16.87 -0.18 1.19 15 23 C -0.10 -2.33 8.49 -38.29 -0.33 -2.65 15 24 H 0.29 6.09 8.30 -40.82 -0.34 5.75 15 25 H 0.14 2.92 8.06 -52.48 -0.42 2.50 15 26 H 0.19 2.81 8.06 -52.49 -0.42 2.39 15 27 H 0.16 1.25 8.14 -51.93 -0.42 0.83 15 28 H 0.18 2.94 8.06 -52.49 -0.42 2.52 15 29 H 0.14 3.29 6.20 -52.49 -0.33 2.96 15 LS Contribution 282.50 15.07 4.26 4.26 Total: -1.00 -27.63 282.50 -4.47 -32.10 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -1.57 Total: 5.19 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -2.85 Total: -4.01 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.61 Total: -41.34 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.12 Total: -7.88 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.63 -4.47 -32.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238869167.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.120 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds