Wall clock time and date at job start Tue Mar 31 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86797 * 120.00366 * 2 1 4 4 H 1.48500 * 109.46907 * 270.00458 * 3 2 1 5 5 H 1.48507 * 109.46708 * 29.99878 * 3 2 1 6 6 H 1.48500 * 109.47212 * 150.00028 * 3 2 1 7 7 C 1.39900 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99701 * 162.91245 * 7 2 1 9 9 C 1.41368 * 120.00294 * 342.90891 * 7 2 1 10 10 C 1.40794 * 120.57708 * 155.68249 * 9 7 2 11 11 N 1.31506 * 120.68733 * 180.02562 * 10 9 7 12 12 C 1.32164 * 122.06594 * 359.97438 * 11 10 9 13 13 F 1.35103 * 119.45089 * 180.02562 * 12 11 10 14 14 C 1.40037 * 121.08883 * 0.02790 * 12 11 10 15 15 C 1.48483 * 120.41300 * 179.97438 * 14 12 11 16 16 C 1.40842 * 126.22445 * 129.97180 * 15 14 12 17 17 N 1.30679 * 108.10178 * 179.97438 * 16 15 14 18 18 N 1.40009 * 108.52815 * 0.02562 * 17 16 15 19 19 C 1.46500 * 125.89771 * 179.97438 * 18 17 16 20 20 F 1.39898 * 109.47238 * 120.02542 * 19 18 17 21 21 F 1.39897 * 109.47029 * 240.02656 * 19 18 17 22 22 C 1.34856 * 108.20455 * 359.97438 * 18 17 16 23 23 C 1.38933 * 119.17182 * 0.24651 * 14 12 11 24 24 H 0.96998 * 119.99537 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.65863 * 359.97438 * 10 9 7 26 26 H 1.07997 * 125.94211 * 0.02562 * 16 15 14 27 27 H 1.08999 * 109.46973 * 0.02562 * 19 18 17 28 28 H 1.07997 * 126.19535 * 180.02562 * 22 18 17 29 29 H 1.07995 * 120.92875 * 179.70539 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4901 2.0463 -1.4001 5 1 1.4401 2.6526 0.7001 6 1 3.5403 1.4400 0.7000 7 6 2.0081 -1.2116 -0.0005 8 1 3.0524 -1.2321 -0.2754 9 6 1.3481 -2.4090 0.3587 10 6 1.8221 -3.6532 -0.0990 11 7 1.2096 -4.7684 0.2335 12 6 0.1349 -4.7762 1.0027 13 9 -0.4523 -5.9530 1.3117 14 6 -0.4052 -3.5847 1.5026 15 6 -1.6135 -3.6109 2.3651 16 6 -1.7632 -2.9650 3.6077 17 7 -2.9629 -3.2228 4.0573 18 7 -3.6210 -4.0370 3.1277 19 6 -4.9866 -4.5525 3.2523 20 9 -5.7581 -4.0934 2.1794 21 9 -4.9598 -5.9512 3.2427 22 6 -2.7807 -4.2648 2.0978 23 6 0.2004 -2.3775 1.1767 24 1 -0.4849 0.8401 0.0004 25 1 2.6975 -3.6922 -0.7304 26 1 -1.0168 -2.3613 4.1024 27 1 -5.4225 -4.2039 4.1886 28 1 -2.9933 -4.8573 1.2203 29 1 -0.1950 -1.4416 1.5427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238869167.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:46 Heat of formation + Delta-G solvation = -50.773812 kcal Electronic energy + Delta-G solvation = -21240.435156 eV Core-core repulsion = 17328.926308 eV Total energy + Delta-G solvation = -3911.508848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.36636 -49.37640 -48.47319 -42.24871 -40.00042 -35.97021 -34.44598 -32.97142 -32.15481 -30.15177 -27.33788 -26.90649 -24.28651 -23.54554 -22.35225 -21.72859 -19.56753 -19.02036 -18.85125 -18.47142 -18.31349 -17.64358 -16.84580 -16.47078 -16.28352 -15.66330 -15.49099 -15.19213 -14.98811 -14.81196 -14.58710 -14.24615 -14.10275 -13.92789 -13.67382 -13.58421 -13.17128 -13.03166 -12.80138 -12.31312 -12.23882 -11.83477 -11.19323 -10.94332 -10.68197 -10.27135 -9.76840 -9.14256 -8.74921 -6.46189 0.25264 0.62444 0.76732 0.86156 1.45222 1.50361 1.60145 1.70338 2.20115 2.49300 2.61251 3.11270 3.30682 3.50128 3.58820 3.65568 3.80042 4.09946 4.27648 4.41022 4.64700 4.70310 5.03486 5.11897 5.20337 5.34759 5.46483 5.66401 5.80342 5.95691 6.32053 6.41091 6.66170 6.68830 7.37779 8.18853 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.005088 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.597679 B = 5502.304592 C = 6448.006662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.459 4.459 8 H 0.097 0.903 9 C 0.038 3.962 10 C -0.006 4.006 11 N -0.503 5.503 12 C 0.132 3.868 13 F -0.147 7.147 14 C -0.051 4.051 15 C -0.182 4.182 16 C 0.088 3.912 17 N -0.282 5.282 18 N -0.438 5.438 19 C 0.503 3.497 20 F -0.188 7.188 21 F -0.188 7.188 22 C 0.079 3.921 23 C -0.114 4.114 24 H 0.296 0.704 25 H 0.154 0.846 26 H 0.213 0.787 27 H 0.209 0.791 28 H 0.182 0.818 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.540 0.191 6.360 9.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.179 4.179 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.487 4.487 8 H 0.115 0.885 9 C 0.033 3.967 10 C -0.168 4.168 11 N -0.215 5.215 12 C -0.021 4.021 13 F -0.127 7.127 14 C -0.056 4.056 15 C -0.193 4.193 16 C -0.101 4.101 17 N -0.101 5.101 18 N -0.229 5.229 19 C 0.370 3.630 20 F -0.170 7.170 21 F -0.169 7.169 22 C -0.064 4.064 23 C -0.140 4.140 24 H 0.107 0.893 25 H 0.171 0.829 26 H 0.229 0.771 27 H 0.225 0.775 28 H 0.199 0.801 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.543 -0.430 6.998 11.052 hybrid contribution 0.458 0.660 -0.900 1.207 sum -8.085 0.230 6.097 10.129 Atomic orbital electron populations 1.69825 1.09169 1.31549 1.32646 1.26850 0.95456 1.04802 0.90827 0.85098 0.79233 0.75311 0.79607 1.18778 1.19197 1.17718 1.19898 0.98728 0.91077 1.39002 0.88507 1.18796 0.92716 0.94442 0.90701 1.22551 1.02882 0.86391 1.04956 1.66244 1.08110 1.34383 1.12804 1.17768 0.96568 0.80254 1.07498 1.91374 1.82596 1.46685 1.91998 1.18507 0.95443 0.92303 0.99380 1.18916 0.94698 1.07441 0.98255 1.24448 0.94483 0.97715 0.93465 1.77128 1.07632 1.11974 1.13330 1.49791 1.13338 1.42761 1.17039 1.21536 0.75441 0.74296 0.91710 1.93119 1.74017 1.88589 1.61264 1.93120 1.95736 1.30890 1.97174 1.22702 0.90387 0.99347 0.93968 1.21651 0.97870 0.95615 0.98843 0.89344 0.82857 0.77086 0.77451 0.80133 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.23 10.92 21.82 0.24 -36.99 15 2 C 0.04 1.69 5.18 85.24 0.44 2.13 15 3 Si 0.99 33.02 29.59 68.60 2.03 35.05 15 4 H -0.26 -8.62 7.11 99.48 0.71 -7.91 15 5 H -0.27 -8.62 7.11 99.48 0.71 -7.92 15 6 H -0.25 -8.28 7.11 99.48 0.71 -7.58 15 7 C -0.46 -21.46 9.08 23.44 0.21 -21.24 15 8 H 0.10 4.22 7.90 -2.91 -0.02 4.20 15 9 C 0.04 1.88 5.59 -21.21 -0.12 1.76 15 10 C -0.01 -0.30 10.96 85.37 0.94 0.64 15 11 N -0.50 -25.21 10.34 -193.75 -2.00 -27.21 15 12 C 0.13 6.44 8.38 85.08 0.71 7.15 15 13 F -0.15 -6.81 16.37 44.97 0.74 -6.08 15 14 C -0.05 -2.35 5.76 -19.94 -0.11 -2.47 15 15 C -0.18 -7.09 5.39 -20.33 -0.11 -7.20 15 16 C 0.09 2.93 11.94 85.50 1.02 3.95 15 17 N -0.28 -8.76 12.54 -56.46 -0.71 -9.47 15 18 N -0.44 -13.00 3.87 -363.94 -1.41 -14.40 15 19 C 0.50 10.53 6.38 127.77 0.81 11.34 15 20 F -0.19 -4.35 17.48 44.97 0.79 -3.56 15 21 F -0.19 -4.30 17.48 44.97 0.79 -3.51 15 22 C 0.08 2.75 10.74 83.81 0.90 3.65 15 23 C -0.11 -5.47 8.49 23.11 0.20 -5.28 15 24 H 0.30 12.28 8.30 -92.71 -0.77 11.51 15 25 H 0.15 6.61 8.06 -2.91 -0.02 6.59 15 26 H 0.21 5.96 8.06 -2.91 -0.02 5.94 15 27 H 0.21 2.43 8.14 -2.39 -0.02 2.41 15 28 H 0.18 6.00 8.06 -2.91 -0.02 5.98 15 29 H 0.13 6.45 6.20 -2.91 -0.02 6.43 15 Total: -1.00 -58.65 282.50 6.57 -52.08 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 1.22 Total: 19.65 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 4.89 Total: -5.56 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -3.88 Total: -88.07 kcal Atomic # 9 Polarization: -15.46 SS G_CDS: 2.31 Total: -13.15 kcal Atomic # 14 Polarization: 33.02 SS G_CDS: 2.03 Total: 35.05 kcal Total: -58.65 6.57 -52.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238869167.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.301 kcal (2) G-P(sol) polarization free energy of solvation -58.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds