Wall clock time and date at job start Tue Mar 31 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30811 * 1 3 3 Si 1.86803 * 119.99770 * 2 1 4 4 H 1.48495 * 109.47322 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47010 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.47224 * 60.00292 * 3 2 1 7 7 C 1.40010 * 120.00613 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00066 * 163.51405 * 7 2 1 9 9 C 1.40864 * 119.99671 * 343.52360 * 7 2 1 10 10 C 1.40758 * 120.33201 * 333.79281 * 9 7 2 11 11 C 1.36402 * 119.98641 * 180.28186 * 10 9 7 12 12 C 1.50700 * 119.65149 * 179.74918 * 11 10 9 13 13 F 1.39895 * 109.47021 * 179.97438 * 12 11 10 14 14 F 1.39906 * 109.46792 * 299.97458 * 12 11 10 15 15 F 1.39892 * 109.47263 * 59.97822 * 12 11 10 16 16 C 1.38964 * 120.69319 * 359.72530 * 11 10 9 17 17 C 1.38016 * 120.68244 * 359.97438 * 16 11 10 18 18 C 1.39211 * 119.98597 * 0.02562 * 17 16 11 19 19 C 1.47836 * 120.34710 * 180.02562 * 18 17 16 20 20 C 1.42559 * 128.22335 * 130.09967 * 19 18 17 21 21 N 1.29936 * 106.24186 * 180.30508 * 20 19 18 22 22 O 1.20819 * 112.09790 * 359.74977 * 21 20 19 23 23 C 1.33910 * 111.93904 * 359.97438 * 22 21 20 24 24 H 0.96998 * 120.00695 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.00620 * 0.02562 * 10 9 7 26 26 H 1.08001 * 119.66093 * 179.97438 * 16 11 10 27 27 H 1.08009 * 120.00699 * 180.02562 * 17 16 11 28 28 H 1.07998 * 126.87417 * 0.03240 * 20 19 18 29 29 H 1.07996 * 126.92512 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7020 1.3466 -0.0006 5 1 1.8832 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0083 -1.2124 -0.0005 8 1 3.0549 -1.2314 -0.2660 9 6 1.3474 -2.4075 0.3449 10 6 0.2211 -2.3786 1.1886 11 6 -0.4100 -3.5406 1.5232 12 6 -1.6119 -3.5015 2.4316 13 9 -2.0875 -4.8017 2.6319 14 9 -1.2485 -2.9430 3.6618 15 9 -2.6152 -2.7233 1.8443 16 6 0.0433 -4.7601 1.0349 17 6 1.1412 -4.8205 0.2008 18 6 1.8068 -3.6519 -0.1590 19 6 2.9834 -3.7072 -1.0524 20 6 3.2357 -2.9401 -2.2272 21 7 4.3869 -3.3373 -2.6803 22 8 4.8743 -4.2000 -1.9890 23 6 4.0922 -4.5071 -0.9463 24 1 -0.4851 0.8400 0.0004 25 1 -0.1409 -1.4370 1.5742 26 1 -0.4688 -5.6700 1.3109 27 1 1.4840 -5.7742 -0.1728 28 1 2.5958 -2.1837 -2.6571 29 1 4.2917 -5.2410 -0.1796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239184240.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:41 Heat of formation + Delta-G solvation = -80.985947 kcal Electronic energy + Delta-G solvation = -21724.213429 eV Core-core repulsion = 17779.101733 eV Total energy + Delta-G solvation = -3945.111696 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.056 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.46739 -47.01008 -46.91006 -44.18753 -38.11774 -34.12576 -33.68685 -31.61642 -30.11244 -29.72499 -25.80248 -25.31235 -22.45386 -22.12279 -21.09638 -19.87930 -18.19303 -17.78801 -17.60342 -17.36285 -16.88002 -16.51845 -15.31900 -15.07847 -14.07931 -13.85710 -13.75914 -13.56920 -13.41295 -13.38946 -13.17212 -13.12480 -12.77804 -12.59616 -12.06512 -11.72909 -11.57448 -11.34551 -11.09443 -10.92997 -10.65863 -10.20975 -10.03588 -9.56690 -9.52910 -8.99760 -7.85736 -7.74786 -7.11248 -4.71258 1.82497 2.30883 2.53501 2.92873 2.95584 2.98847 3.11653 3.45623 3.70362 3.87692 4.18692 4.61383 4.84838 4.96942 5.04664 5.33560 5.49819 5.80935 5.96771 6.04029 6.21849 6.33520 6.66191 6.70655 6.74518 6.91259 7.01420 7.37556 7.49987 7.58946 7.78707 8.14651 8.44663 8.50388 8.89199 9.81363 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.007649 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.565777 B = 3659.842703 C = 5382.642943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.439 4.439 8 H 0.087 0.913 9 C 0.127 3.873 10 C -0.103 4.103 11 C -0.154 4.154 12 C 0.504 3.496 13 F -0.189 7.189 14 F -0.188 7.188 15 F -0.182 7.182 16 C -0.212 4.212 17 C -0.063 4.063 18 C -0.142 4.142 19 C -0.092 4.092 20 C 0.012 3.988 21 N -0.385 5.385 22 O 0.082 5.918 23 C -0.100 4.100 24 H 0.289 0.711 25 H 0.130 0.870 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.188 0.812 29 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 -3.668 1.829 4.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.147 4.147 3 Si 0.733 3.267 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.467 4.467 8 H 0.105 0.895 9 C 0.124 3.876 10 C -0.122 4.122 11 C -0.155 4.155 12 C 0.450 3.550 13 F -0.171 7.171 14 F -0.169 7.169 15 F -0.164 7.164 16 C -0.231 4.231 17 C -0.081 4.081 18 C -0.144 4.144 19 C -0.095 4.095 20 C -0.167 4.167 21 N -0.091 5.091 22 O 0.019 5.981 23 C -0.181 4.181 24 H 0.100 0.900 25 H 0.148 0.852 26 H 0.125 0.875 27 H 0.120 0.880 28 H 0.206 0.794 29 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.398 -3.159 0.785 3.543 hybrid contribution -0.755 0.770 0.837 1.365 sum 0.643 -2.389 1.622 2.958 Atomic orbital electron populations 1.69759 1.07693 1.30305 1.32198 1.26040 0.94826 1.01854 0.91964 0.86198 0.81113 0.80314 0.79048 1.18067 1.19533 1.19259 1.19624 0.98015 0.90524 1.38517 0.89458 1.17376 0.90203 0.91533 0.88535 1.20849 0.97422 0.95833 0.98074 1.19416 0.96426 0.97134 1.02569 1.18768 0.84351 0.72564 0.79341 1.93080 1.89919 1.38625 1.95468 1.93147 1.91784 1.85605 1.46409 1.93173 1.63797 1.75424 1.83994 1.19990 1.01484 0.95093 1.06567 1.20492 0.94871 0.96016 0.96754 1.17798 0.98577 0.93916 1.04122 1.20060 0.96101 0.96966 0.96401 1.25214 0.94091 1.01991 0.95424 1.73582 1.12681 1.05162 1.17706 1.84616 1.41821 1.41962 1.29699 1.26047 0.91997 1.05091 0.94971 0.90007 0.85236 0.87514 0.87966 0.79447 0.77434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.06 10.99 55.55 0.61 -17.45 15 2 C 0.07 1.66 5.15 -17.32 -0.09 1.57 15 3 Si 0.91 17.18 29.59 -169.99 -5.03 12.15 15 4 H -0.26 -4.92 7.11 56.52 0.40 -4.51 15 5 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 7 C -0.44 -10.24 7.91 -37.93 -0.30 -10.54 15 8 H 0.09 2.03 6.73 -52.49 -0.35 1.67 15 9 C 0.13 2.97 5.58 -106.55 -0.59 2.37 15 10 C -0.10 -2.40 8.11 -39.29 -0.32 -2.72 15 11 C -0.15 -3.32 5.34 -105.01 -0.56 -3.88 15 12 C 0.50 10.03 3.30 36.01 0.12 10.15 15 13 F -0.19 -3.50 15.93 2.25 0.04 -3.47 15 14 F -0.19 -3.69 17.22 2.25 0.04 -3.65 15 15 F -0.18 -3.73 17.22 2.25 0.04 -3.70 15 16 C -0.21 -4.26 9.41 -39.39 -0.37 -4.63 15 17 C -0.06 -1.24 9.75 -39.30 -0.38 -1.62 15 18 C -0.14 -3.02 5.89 -104.21 -0.61 -3.63 15 19 C -0.09 -1.77 5.06 -104.71 -0.53 -2.30 15 20 C 0.01 0.22 10.71 -16.69 -0.18 0.05 15 21 N -0.39 -7.29 12.02 30.69 0.37 -6.92 15 22 O 0.08 1.42 11.16 17.54 0.20 1.62 15 23 C -0.10 -1.62 12.31 30.33 0.37 -1.25 15 24 H 0.29 6.12 8.30 -40.82 -0.34 5.78 15 25 H 0.13 3.17 6.23 -52.49 -0.33 2.84 15 26 H 0.11 1.94 7.12 -52.49 -0.37 1.57 15 27 H 0.10 1.71 8.06 -52.48 -0.42 1.29 15 28 H 0.19 3.56 8.06 -52.49 -0.42 3.14 15 29 H 0.21 2.54 8.06 -52.49 -0.42 2.12 15 LS Contribution 276.54 15.07 4.17 4.17 Total: -1.00 -24.56 276.54 -4.48 -29.04 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -1.46 Total: 4.65 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -3.45 Total: -16.44 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 0.98 Total: -24.37 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.20 Total: 1.62 kcal Atomic # 9 Polarization: -10.93 SS G_CDS: 0.11 Total: -10.81 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -24.56 -4.48 -29.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239184240.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.946 kcal (2) G-P(sol) polarization free energy of solvation -24.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds