Wall clock time and date at job start Tue Mar 31 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86800 * 120.00057 * 2 1 4 4 H 1.48493 * 109.47413 * 265.44892 * 3 2 1 5 5 H 1.48502 * 109.46942 * 25.45020 * 3 2 1 6 6 H 1.48506 * 109.46784 * 145.44587 * 3 2 1 7 7 C 1.40036 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00214 * 348.07979 * 7 2 1 9 9 C 1.41315 * 119.99982 * 168.08891 * 7 2 1 10 10 C 1.40864 * 120.14283 * 176.46263 * 9 7 2 11 11 N 1.31864 * 119.97322 * 180.02562 * 10 9 7 12 12 C 1.32191 * 120.29562 * 359.97438 * 11 10 9 13 13 C 1.40065 * 120.28893 * 0.02562 * 12 11 10 14 14 C 1.48184 * 119.99153 * 179.97438 * 13 12 11 15 15 C 1.39953 * 120.10650 * 180.02562 * 14 13 12 16 16 C 1.35870 * 120.64177 * 180.02562 * 15 14 13 17 17 C 1.41152 * 120.60356 * 0.29341 * 16 15 14 18 18 N 1.34551 * 129.51039 * 180.37880 * 17 16 15 19 19 C 1.27988 * 117.89239 * 179.59132 * 18 17 16 20 20 S 1.70648 * 111.52406 * 359.73259 * 19 18 17 21 21 C 1.40059 * 118.71293 * 359.46021 * 17 16 15 22 22 C 1.38913 * 120.10036 * 0.02562 * 14 13 12 23 23 N 1.32600 * 120.01814 * 0.25467 * 13 12 11 24 24 H 0.97006 * 119.99520 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.01345 * 359.97438 * 10 9 7 26 26 H 1.07989 * 119.85834 * 179.97438 * 12 11 10 27 27 H 1.08001 * 119.68046 * 0.02562 * 15 14 13 28 28 H 1.07998 * 119.69621 * 180.02562 * 16 15 14 29 29 H 1.08003 * 124.23951 * 179.74070 * 19 18 17 30 30 H 1.08000 * 120.07183 * 359.95746 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.5851 1.9909 -1.3956 5 1 1.3940 2.6785 0.6017 6 1 3.4875 1.4698 0.7941 7 6 2.0075 -1.2128 -0.0005 8 1 1.4850 -2.1381 0.1922 9 6 3.3979 -1.2259 -0.2531 10 6 4.1185 -2.4340 -0.1811 11 7 5.4159 -2.4423 -0.4169 12 6 6.0454 -1.3206 -0.7218 13 6 5.3403 -0.1127 -0.7967 14 6 6.0527 1.1409 -1.1384 15 6 5.3507 2.3493 -1.2133 16 6 5.9929 3.5050 -1.5263 17 6 7.3799 3.5082 -1.7880 18 7 8.1891 4.5357 -2.1040 19 6 9.4304 4.2852 -2.2896 20 16 9.7737 2.6277 -2.0731 21 6 8.0826 2.2993 -1.7076 22 6 7.4196 1.1203 -1.3854 23 7 4.0365 -0.0897 -0.5563 24 1 -0.4850 0.8401 -0.0004 25 1 3.6089 -3.3530 0.0680 26 1 7.1081 -1.3355 -0.9132 27 1 4.2881 2.3633 -1.0205 28 1 5.4362 4.4289 -1.5795 29 1 10.1682 5.0296 -2.5503 30 1 7.9659 0.1904 -1.3282 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240343203.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:43 Heat of formation + Delta-G solvation = 92.437682 kcal Electronic energy + Delta-G solvation = -18504.167331 eV Core-core repulsion = 15583.478210 eV Total energy + Delta-G solvation = -2920.689120 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.047 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.42110 -39.41582 -36.87531 -34.27109 -32.90098 -31.85109 -30.91565 -28.92918 -26.44002 -25.17606 -23.38325 -23.06708 -21.65969 -20.75608 -18.50243 -18.00090 -16.75050 -16.40396 -15.92651 -15.61983 -15.08623 -14.78701 -14.72065 -13.85731 -13.70804 -13.57261 -13.26970 -12.73593 -12.31623 -11.96476 -11.89396 -11.56669 -11.33121 -11.19038 -10.77757 -10.69131 -10.15850 -10.00556 -9.74882 -9.62755 -9.26938 -8.90061 -8.26479 -7.71793 -7.65742 -7.20376 -5.02141 0.24109 1.20559 1.25240 1.65912 1.82265 2.37696 2.72089 3.18242 3.26625 3.39698 3.80237 3.95524 4.10318 4.37093 4.56908 4.75286 5.04864 5.25839 5.28303 5.30925 5.48160 5.66533 5.82536 5.88482 5.95243 6.16930 6.26624 6.41939 6.56710 6.72648 6.75962 6.84796 7.32328 7.52393 7.78709 8.06505 8.18529 8.73781 9.17478 9.68246 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.024480 B = 0.005490 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.535974 B = 5098.606656 C = 6211.635498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.077 3.923 3 Si 0.991 3.009 4 H -0.269 1.269 5 H -0.324 1.324 6 H -0.252 1.252 7 C -0.382 4.382 8 H 0.105 0.895 9 C 0.194 3.806 10 C -0.029 4.029 11 N -0.420 5.420 12 C -0.102 4.102 13 C 0.158 3.842 14 C 0.005 3.995 15 C -0.089 4.089 16 C -0.068 4.068 17 C 0.071 3.929 18 N -0.462 5.462 19 C 0.056 3.944 20 S 0.087 5.913 21 C -0.174 4.174 22 C -0.061 4.061 23 N -0.535 5.535 24 H 0.295 0.705 25 H 0.145 0.855 26 H 0.136 0.864 27 H 0.146 0.854 28 H 0.136 0.864 29 H 0.201 0.799 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.100 7.090 -3.078 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.149 4.149 3 Si 0.826 3.174 4 H -0.197 1.197 5 H -0.257 1.257 6 H -0.178 1.178 7 C -0.413 4.413 8 H 0.123 0.877 9 C 0.069 3.931 10 C -0.201 4.201 11 N -0.130 5.130 12 C -0.258 4.258 13 C 0.015 3.985 14 C 0.000 4.000 15 C -0.109 4.109 16 C -0.089 4.089 17 C -0.048 4.048 18 N -0.174 5.174 19 C -0.249 4.249 20 S 0.339 5.661 21 C -0.292 4.292 22 C -0.084 4.084 23 N -0.258 5.258 24 H 0.105 0.895 25 H 0.163 0.837 26 H 0.154 0.846 27 H 0.164 0.836 28 H 0.153 0.847 29 H 0.218 0.782 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.615 7.145 -3.218 15.709 hybrid contribution -0.686 0.766 0.072 1.031 sum 12.929 7.912 -3.147 15.481 Atomic orbital electron populations 1.69603 1.08693 1.31789 1.29871 1.26507 0.95025 1.04040 0.89289 0.84902 0.77215 0.75369 0.79931 1.19666 1.25657 1.17775 1.19604 0.89585 0.96380 1.35766 0.87708 1.19347 0.94478 0.88101 0.91149 1.23210 0.90190 0.98334 1.08411 1.67730 1.10131 1.28984 1.06205 1.22432 0.99539 0.88598 1.15244 1.20099 0.91091 0.91928 0.95362 1.18632 0.91729 0.92581 0.97089 1.21417 1.01948 0.90959 0.96607 1.20319 0.90225 0.99092 0.99233 1.19255 0.95328 0.86384 1.03871 1.66159 1.03368 1.33459 1.14404 1.28013 0.95815 0.99008 1.02029 1.83873 1.05729 1.06522 1.69940 1.23611 0.96713 0.98944 1.09928 1.20365 0.93174 0.95842 0.99061 1.67494 1.07736 1.28506 1.22027 0.89493 0.83737 0.84631 0.83646 0.84659 0.78217 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.31 13.92 55.55 0.77 -18.54 16 2 C 0.08 1.91 5.52 -17.34 -0.10 1.81 16 3 Si 0.99 22.38 22.68 -169.99 -3.86 18.52 16 4 H -0.27 -5.99 6.25 56.52 0.35 -5.63 16 5 H -0.32 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.25 -5.88 6.31 56.52 0.36 -5.52 16 7 C -0.38 -9.60 9.70 -37.74 -0.37 -9.97 16 8 H 0.10 2.62 8.06 -52.49 -0.42 2.19 16 9 C 0.19 4.75 6.38 -84.84 -0.54 4.21 16 10 C -0.03 -0.65 10.98 -16.54 -0.18 -0.84 16 11 N -0.42 -9.42 10.47 -12.04 -0.13 -9.55 16 12 C -0.10 -2.14 10.62 -16.71 -0.18 -2.32 16 13 C 0.16 3.46 6.74 -82.76 -0.56 2.90 16 14 C 0.00 0.09 5.88 -104.92 -0.62 -0.52 16 15 C -0.09 -1.66 9.45 -39.79 -0.38 -2.04 16 16 C -0.07 -1.11 10.03 -39.33 -0.39 -1.51 16 17 C 0.07 1.14 7.00 -84.89 -0.59 0.55 16 18 N -0.46 -6.69 10.56 -12.87 -0.14 -6.82 16 19 C 0.06 0.61 12.10 51.16 0.62 1.23 16 20 S 0.09 0.96 23.17 -107.50 -2.49 -1.53 16 21 C -0.17 -2.62 6.54 -38.60 -0.25 -2.88 16 22 C -0.06 -0.97 9.45 -39.03 -0.37 -1.34 16 23 N -0.53 -12.91 4.25 -7.51 -0.03 -12.94 16 24 H 0.29 6.63 8.29 -40.82 -0.34 6.29 16 25 H 0.15 2.96 8.06 -52.49 -0.42 2.53 16 26 H 0.14 2.40 6.18 -52.49 -0.32 2.07 16 27 H 0.15 2.93 2.86 -52.49 -0.15 2.78 16 28 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 29 H 0.20 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.14 1.95 6.18 -52.49 -0.32 1.62 16 LS Contribution 270.85 15.07 4.08 4.08 Total: -1.00 -28.05 270.85 -7.41 -35.46 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -1.72 Total: 2.02 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -3.90 Total: -10.70 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.48 Total: -47.85 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -3.86 Total: 18.52 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.49 Total: -1.53 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.05 -7.41 -35.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240343203.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.897 kcal (2) G-P(sol) polarization free energy of solvation -28.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds