Wall clock time and date at job start Tue Mar 31 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86800 * 120.00057 * 2 1 4 4 H 1.48493 * 109.47413 * 265.44892 * 3 2 1 5 5 H 1.48502 * 109.46942 * 25.45020 * 3 2 1 6 6 H 1.48506 * 109.46784 * 145.44587 * 3 2 1 7 7 C 1.40036 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00214 * 348.07979 * 7 2 1 9 9 C 1.41315 * 119.99982 * 168.08891 * 7 2 1 10 10 C 1.40864 * 120.14283 * 176.46263 * 9 7 2 11 11 N 1.31864 * 119.97322 * 180.02562 * 10 9 7 12 12 C 1.32191 * 120.29562 * 359.97438 * 11 10 9 13 13 C 1.40065 * 120.28893 * 0.02562 * 12 11 10 14 14 C 1.48184 * 119.99153 * 179.97438 * 13 12 11 15 15 C 1.39953 * 120.10650 * 180.02562 * 14 13 12 16 16 C 1.35870 * 120.64177 * 180.02562 * 15 14 13 17 17 C 1.41152 * 120.60356 * 0.29341 * 16 15 14 18 18 N 1.34551 * 129.51039 * 180.37880 * 17 16 15 19 19 C 1.27988 * 117.89239 * 179.59132 * 18 17 16 20 20 S 1.70648 * 111.52406 * 359.73259 * 19 18 17 21 21 C 1.40059 * 118.71293 * 359.46021 * 17 16 15 22 22 C 1.38913 * 120.10036 * 0.02562 * 14 13 12 23 23 N 1.32600 * 120.01814 * 0.25467 * 13 12 11 24 24 H 0.97006 * 119.99520 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.01345 * 359.97438 * 10 9 7 26 26 H 1.07989 * 119.85834 * 179.97438 * 12 11 10 27 27 H 1.08001 * 119.68046 * 0.02562 * 15 14 13 28 28 H 1.07998 * 119.69621 * 180.02562 * 16 15 14 29 29 H 1.08003 * 124.23951 * 179.74070 * 19 18 17 30 30 H 1.08000 * 120.07183 * 359.95746 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.5851 1.9909 -1.3956 5 1 1.3940 2.6785 0.6017 6 1 3.4875 1.4698 0.7941 7 6 2.0075 -1.2128 -0.0005 8 1 1.4850 -2.1381 0.1922 9 6 3.3979 -1.2259 -0.2531 10 6 4.1185 -2.4340 -0.1811 11 7 5.4159 -2.4423 -0.4169 12 6 6.0454 -1.3206 -0.7218 13 6 5.3403 -0.1127 -0.7967 14 6 6.0527 1.1409 -1.1384 15 6 5.3507 2.3493 -1.2133 16 6 5.9929 3.5050 -1.5263 17 6 7.3799 3.5082 -1.7880 18 7 8.1891 4.5357 -2.1040 19 6 9.4304 4.2852 -2.2896 20 16 9.7737 2.6277 -2.0731 21 6 8.0826 2.2993 -1.7076 22 6 7.4196 1.1203 -1.3854 23 7 4.0365 -0.0897 -0.5563 24 1 -0.4850 0.8401 -0.0004 25 1 3.6089 -3.3530 0.0680 26 1 7.1081 -1.3355 -0.9132 27 1 4.2881 2.3633 -1.0205 28 1 5.4362 4.4289 -1.5795 29 1 10.1682 5.0296 -2.5503 30 1 7.9659 0.1904 -1.3282 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240343203.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:43 Heat of formation + Delta-G solvation = 74.642994 kcal Electronic energy + Delta-G solvation = -18504.938966 eV Core-core repulsion = 15583.478210 eV Total energy + Delta-G solvation = -2921.460756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.047 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.72639 -40.98451 -38.11434 -36.09730 -34.62430 -33.40669 -32.23520 -30.33361 -28.15981 -26.46015 -24.81626 -24.51707 -23.15307 -22.12247 -19.84798 -19.63145 -18.16255 -17.92342 -17.40592 -17.15992 -16.52955 -16.22824 -15.92731 -15.41055 -15.06100 -14.97547 -14.59410 -14.29094 -13.86845 -13.46707 -13.25500 -13.20566 -12.98867 -12.91817 -12.59479 -11.96074 -11.72696 -11.43428 -11.26212 -11.04911 -10.71013 -10.47124 -9.48005 -9.46345 -9.06136 -9.02040 -6.89820 -0.95106 0.01109 0.20583 0.32709 0.61952 0.67561 1.34344 1.38236 1.48144 1.57317 2.29745 2.39633 2.65200 2.97028 3.17270 3.49778 3.50957 3.82312 3.89895 4.02403 4.14459 4.23637 4.28162 4.54442 4.60564 4.66751 4.88937 4.96059 4.99714 5.08883 5.32972 5.47380 5.57643 5.87624 6.24733 6.33905 6.51332 6.94978 7.39323 7.87174 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.024480 B = 0.005490 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.535974 B = 5098.606656 C = 6211.635498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.053 3.947 3 Si 1.032 2.968 4 H -0.271 1.271 5 H -0.315 1.315 6 H -0.268 1.268 7 C -0.415 4.415 8 H 0.093 0.907 9 C 0.186 3.814 10 C -0.045 4.045 11 N -0.425 5.425 12 C -0.092 4.092 13 C 0.151 3.849 14 C -0.034 4.034 15 C -0.105 4.105 16 C -0.075 4.075 17 C 0.073 3.927 18 N -0.498 5.498 19 C 0.077 3.923 20 S 0.160 5.840 21 C -0.204 4.204 22 C -0.041 4.041 23 N -0.553 5.553 24 H 0.303 0.697 25 H 0.160 0.840 26 H 0.175 0.825 27 H 0.124 0.876 28 H 0.149 0.851 29 H 0.249 0.751 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.280 8.503 -4.031 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.169 4.169 3 Si 0.867 3.133 4 H -0.199 1.199 5 H -0.247 1.247 6 H -0.195 1.195 7 C -0.447 4.447 8 H 0.111 0.889 9 C 0.060 3.940 10 C -0.215 4.215 11 N -0.136 5.136 12 C -0.249 4.249 13 C 0.009 3.991 14 C -0.039 4.039 15 C -0.126 4.126 16 C -0.096 4.096 17 C -0.048 4.048 18 N -0.212 5.212 19 C -0.227 4.227 20 S 0.414 5.586 21 C -0.322 4.322 22 C -0.064 4.064 23 N -0.276 5.276 24 H 0.114 0.886 25 H 0.178 0.822 26 H 0.192 0.808 27 H 0.142 0.858 28 H 0.166 0.834 29 H 0.265 0.735 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 17.793 8.531 -4.170 20.168 hybrid contribution -1.514 0.442 0.258 1.598 sum 16.279 8.973 -3.912 18.995 Atomic orbital electron populations 1.69594 1.09091 1.32697 1.31526 1.26921 0.95455 1.05413 0.89108 0.84308 0.75736 0.73796 0.79477 1.19881 1.24729 1.19517 1.19603 0.90304 0.96308 1.38501 0.88857 1.19499 0.94505 0.89003 0.90951 1.23400 0.90578 0.98480 1.09064 1.67813 1.09797 1.29628 1.06317 1.23092 1.01153 0.87821 1.12815 1.20640 0.90463 0.93780 0.94256 1.18546 0.93119 0.91413 1.00818 1.21249 1.01120 0.92010 0.98193 1.20390 0.91154 0.98811 0.99251 1.19443 0.95355 0.87397 1.02599 1.66252 1.04647 1.33175 1.17105 1.28964 0.95409 1.00344 0.97980 1.83732 1.01385 1.05583 1.67892 1.23966 0.99750 0.98321 1.10206 1.20485 0.91914 0.97133 0.96841 1.67458 1.09221 1.28552 1.22346 0.88611 0.82245 0.80840 0.85809 0.83375 0.73545 0.82167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.49 13.92 21.84 0.30 -41.18 16 2 C 0.05 2.76 5.52 85.29 0.47 3.23 16 3 Si 1.03 47.85 22.68 68.60 1.56 49.40 16 4 H -0.27 -12.44 6.25 99.48 0.62 -11.82 16 5 H -0.32 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.27 -12.97 6.31 99.48 0.63 -12.34 16 7 C -0.41 -21.89 9.70 23.46 0.23 -21.66 16 8 H 0.09 4.95 8.06 -2.91 -0.02 4.93 16 9 C 0.19 9.39 6.38 40.24 0.26 9.65 16 10 C -0.05 -2.09 10.98 85.33 0.94 -1.15 16 11 N -0.42 -18.65 10.47 -192.01 -2.01 -20.66 16 12 C -0.09 -3.70 10.62 85.08 0.90 -2.80 16 13 C 0.15 6.56 6.74 42.12 0.28 6.85 16 14 C -0.03 -1.27 5.88 -20.06 -0.12 -1.39 16 15 C -0.10 -3.94 9.45 22.14 0.21 -3.73 16 16 C -0.08 -2.43 10.03 22.44 0.23 -2.20 16 17 C 0.07 2.15 7.00 39.88 0.28 2.43 16 18 N -0.50 -12.65 10.56 -194.54 -2.05 -14.70 16 19 C 0.08 1.25 12.10 130.80 1.58 2.84 16 20 S 0.16 2.73 23.17 -56.49 -1.31 1.42 16 21 C -0.20 -5.49 6.54 22.91 0.15 -5.34 16 22 C -0.04 -1.20 9.45 22.63 0.21 -0.98 16 23 N -0.55 -27.24 4.25 -177.68 -0.76 -27.99 16 24 H 0.30 14.08 8.29 -92.70 -0.77 13.31 16 25 H 0.16 6.66 8.06 -2.91 -0.02 6.64 16 26 H 0.17 5.51 6.18 -2.92 -0.02 5.49 16 27 H 0.12 5.14 2.86 -2.91 -0.01 5.13 16 28 H 0.15 4.17 8.06 -2.91 -0.02 4.14 16 29 H 0.25 1.49 8.06 -2.91 -0.02 1.47 16 30 H 0.16 3.85 6.18 -2.91 -0.02 3.84 16 Total: -1.00 -62.69 270.85 2.40 -60.29 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 1.05 Total: 7.69 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 5.62 Total: -14.26 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -4.52 Total: -104.54 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.56 Total: 49.40 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.31 Total: 1.42 kcal Total: -62.69 2.40 -60.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240343203.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.932 kcal (2) G-P(sol) polarization free energy of solvation -62.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds