Wall clock time and date at job start Tue Mar 31 2020 05:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86805 * 120.00217 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72561 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72485 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72575 * 3 2 1 7 7 C 1.40115 * 119.99883 * 179.72675 * 2 1 3 8 8 H 1.08000 * 119.99546 * 179.97438 * 7 2 1 9 9 C 1.40956 * 120.00049 * 0.02562 * 7 2 1 10 10 N 1.33701 * 119.12313 * 359.72356 * 9 7 2 11 11 C 1.31538 * 120.83204 * 179.75383 * 10 9 7 12 12 C 1.40535 * 119.08712 * 0.51516 * 11 10 9 13 13 C 1.47740 * 120.79693 * 179.71974 * 12 11 10 14 14 C 1.40238 * 120.12755 * 179.74889 * 13 12 11 15 15 C 1.35735 * 120.61299 * 179.75213 * 14 13 12 16 16 C 1.41317 * 120.64299 * 0.48281 * 15 14 13 17 17 N 1.34423 * 129.48728 * 179.76936 * 16 15 14 18 18 C 1.28067 * 117.91109 * 180.02562 * 17 16 15 19 19 S 1.70640 * 111.52643 * 0.02562 * 18 17 16 20 20 C 1.40190 * 118.74374 * 359.80118 * 16 15 14 21 21 C 1.38905 * 120.41195 * 359.95498 * 20 16 15 22 22 C 1.40530 * 118.40696 * 359.74538 * 12 11 10 23 23 N 1.31544 * 119.08681 * 359.97438 * 22 12 11 24 24 H 0.97000 * 120.00201 * 0.27120 * 1 2 3 25 25 H 1.08008 * 120.45482 * 180.26084 * 11 10 9 26 26 H 1.07999 * 119.69437 * 359.97438 * 14 13 12 27 27 H 1.08002 * 119.67783 * 180.28384 * 15 14 13 28 28 H 1.07996 * 124.23460 * 180.02562 * 18 17 16 29 29 H 1.07997 * 120.07654 * 179.97438 * 21 20 16 30 30 H 1.08005 * 120.45857 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0996 1.6935 -1.2091 5 1 1.2758 2.7464 -0.0067 6 1 3.0896 1.6993 1.2158 7 6 2.0073 -1.2134 0.0058 8 1 3.0873 -1.2134 0.0054 9 6 1.3025 -2.4341 0.0111 10 7 -0.0343 -2.4136 0.0161 11 6 -0.7257 -3.5326 0.0162 12 6 -0.0401 -4.7594 0.0221 13 6 -0.7788 -6.0388 0.0287 14 6 -0.0803 -7.2549 0.0291 15 6 -0.7490 -8.4360 0.0402 16 6 -2.1619 -8.4639 0.0413 17 7 -2.9961 -9.5179 0.0471 18 6 -4.2556 -9.2857 0.0462 19 16 -4.5835 -7.6111 0.0367 20 6 -2.8602 -7.2482 0.0349 21 6 -2.1716 -6.0419 0.0286 22 6 1.3651 -4.7399 0.0220 23 7 1.9886 -3.5816 0.0161 24 1 -0.4850 0.8400 -0.0040 25 1 -1.8055 -3.5090 0.0161 26 1 0.9996 -7.2516 0.0242 27 1 -0.1959 -9.3637 0.0450 28 1 -5.0150 -10.0535 0.0509 29 1 -2.7150 -5.1086 0.0233 30 1 1.9255 -5.6632 0.0260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240344703.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:50 Heat of formation + Delta-G solvation = 99.018898 kcal Electronic energy + Delta-G solvation = -17964.977754 eV Core-core repulsion = 15044.574017 eV Total energy + Delta-G solvation = -2920.403737 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.047 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.08620 -39.04164 -36.63462 -34.11777 -32.21530 -31.54206 -30.74393 -28.77701 -26.40375 -24.48898 -23.61796 -22.41427 -21.54886 -20.60901 -18.21196 -18.18453 -16.40741 -16.17001 -15.76616 -15.13650 -14.90877 -14.50573 -14.45793 -13.61691 -13.25269 -13.24143 -12.92792 -12.59086 -12.26475 -11.96909 -11.76966 -11.51819 -11.39356 -10.99489 -10.55753 -10.53020 -9.93698 -9.79600 -9.53345 -9.41757 -9.39353 -8.94812 -8.09398 -7.57030 -7.36826 -6.84742 -4.97291 0.55980 1.47363 1.49688 1.92521 2.06953 2.76438 2.83948 2.88952 2.91819 3.06005 3.65190 4.04061 4.20627 4.45591 4.88584 5.18817 5.33797 5.46818 5.53563 5.62141 5.67926 5.71315 5.91619 6.05745 6.13861 6.37531 6.49225 6.53811 6.68863 6.85211 7.00465 7.20446 7.38572 7.78583 7.84210 8.16838 8.25361 8.83089 9.78770 9.98373 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.039198 B = 0.003587 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.145209 B = 7803.206318 C = 8507.504695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.688 5.688 2 C 0.056 3.944 3 Si 0.926 3.074 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.361 4.361 8 H 0.099 0.901 9 C 0.374 3.626 10 N -0.507 5.507 11 C 0.189 3.811 12 C -0.339 4.339 13 C 0.072 3.928 14 C -0.128 4.128 15 C -0.047 4.047 16 C 0.025 3.975 17 N -0.454 5.454 18 C 0.035 3.965 19 S 0.064 5.936 20 C -0.142 4.142 21 C -0.120 4.120 22 C 0.196 3.804 23 N -0.591 5.591 24 H 0.283 0.717 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.128 0.872 28 H 0.195 0.805 29 H 0.128 0.872 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.921 -8.273 0.027 10.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.307 5.307 2 C -0.173 4.173 3 Si 0.748 3.252 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.393 4.393 8 H 0.117 0.883 9 C 0.144 3.856 10 N -0.223 5.223 11 C 0.010 3.990 12 C -0.349 4.349 13 C 0.066 3.934 14 C -0.149 4.149 15 C -0.068 4.068 16 C -0.094 4.094 17 N -0.166 5.166 18 C -0.269 4.269 19 S 0.316 5.684 20 C -0.260 4.260 21 C -0.144 4.144 22 C 0.019 3.981 23 N -0.308 5.308 24 H 0.094 0.906 25 H 0.150 0.850 26 H 0.151 0.849 27 H 0.146 0.854 28 H 0.212 0.788 29 H 0.146 0.854 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.295 -7.100 0.031 9.489 hybrid contribution 0.467 -0.410 0.000 0.622 sum -5.828 -7.510 0.031 9.506 Atomic orbital electron populations 1.70108 1.07564 1.29222 1.23843 1.26293 0.95218 1.02008 0.93820 0.86062 0.79944 0.78697 0.80472 1.18382 1.19741 1.18379 1.19582 0.95347 0.87915 1.36483 0.88259 1.19954 0.86027 0.90905 0.88749 1.69366 1.08015 1.26751 1.18151 1.23090 0.99118 0.87841 0.88955 1.19652 0.95270 0.92757 1.27236 1.18666 0.91356 0.92589 0.90837 1.20790 1.00341 0.91127 1.02630 1.20185 0.89781 0.98510 0.98370 1.19088 0.94888 0.85768 1.09624 1.66032 1.02653 1.33896 1.14064 1.27772 0.95683 0.98832 1.04663 1.83833 1.04358 1.04711 1.75507 1.23604 0.95568 0.98780 1.08050 1.20250 0.93310 0.94909 1.05977 1.22734 0.90342 0.95953 0.89032 1.68671 1.40674 0.98437 1.23062 0.90573 0.85006 0.84938 0.85446 0.78793 0.85414 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.68 11.40 55.55 0.63 -16.05 16 2 C 0.06 1.31 5.50 -17.34 -0.10 1.21 16 3 Si 0.93 16.89 29.56 -169.99 -5.02 11.87 16 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 5 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 6 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 7 C -0.36 -9.15 9.34 -37.85 -0.35 -9.50 16 8 H 0.10 2.38 7.85 -52.49 -0.41 1.97 16 9 C 0.37 9.89 7.35 -158.13 -1.16 8.73 16 10 N -0.51 -13.16 7.82 -12.40 -0.10 -13.25 16 11 C 0.19 4.25 10.70 -16.81 -0.18 4.07 16 12 C -0.34 -7.03 5.94 -104.28 -0.62 -7.65 16 13 C 0.07 1.28 5.88 -104.87 -0.62 0.66 16 14 C -0.13 -2.01 9.35 -39.73 -0.37 -2.38 16 15 C -0.05 -0.72 10.03 -39.31 -0.39 -1.11 16 16 C 0.03 0.42 7.00 -84.83 -0.59 -0.18 16 17 N -0.45 -7.02 10.56 -12.80 -0.14 -7.16 16 18 C 0.04 0.43 12.11 51.19 0.62 1.05 16 19 S 0.06 0.82 23.17 -107.50 -2.49 -1.67 16 20 C -0.14 -2.30 6.54 -38.60 -0.25 -2.56 16 21 C -0.12 -2.05 9.48 -38.95 -0.37 -2.42 16 22 C 0.20 4.18 10.70 -16.81 -0.18 4.00 16 23 N -0.59 -14.64 10.34 -12.40 -0.13 -14.77 16 24 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 25 H 0.13 2.61 6.33 -52.48 -0.33 2.28 16 26 H 0.13 1.80 6.27 -52.49 -0.33 1.47 16 27 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 28 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.13 2.06 6.28 -52.49 -0.33 1.73 16 30 H 0.14 2.35 6.32 -52.48 -0.33 2.02 16 LS Contribution 281.54 15.07 4.24 4.24 Total: -1.00 -28.95 281.54 -9.28 -38.23 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -1.71 Total: 4.64 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -4.57 Total: -6.07 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.27 Total: -51.24 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.02 Total: 11.87 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.49 Total: -1.67 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.95 -9.28 -38.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240344703.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.248 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds