Wall clock time and date at job start Tue Mar 31 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39473 * 120.10220 * 81.21161 * 3 2 1 5 5 C 1.39025 * 119.73460 * 180.02562 * 4 3 2 6 6 C 1.48424 * 120.02659 * 179.97438 * 5 4 3 7 7 C 1.39722 * 119.99895 * 359.75215 * 6 5 4 8 8 C 1.38394 * 120.37799 * 179.76380 * 7 6 5 9 9 C 1.37722 * 120.37532 * 0.51029 * 8 7 6 10 10 C 1.40749 * 119.99069 * 359.74086 * 9 8 7 11 11 C 1.41425 * 120.18589 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99973 * 154.80632 * 11 10 9 13 13 C 1.39930 * 120.00021 * 334.79936 * 11 10 9 14 14 N 1.30828 * 119.99910 * 342.74490 * 13 11 10 15 15 Si 1.86803 * 119.99729 * 162.74433 * 13 11 10 16 16 H 1.48494 * 109.47086 * 59.99951 * 15 13 11 17 17 H 1.48503 * 109.47018 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46774 * 299.99940 * 15 13 11 19 19 C 1.38724 * 119.99745 * 180.02562 * 6 5 4 20 20 C 1.39477 * 119.94140 * 359.97438 * 5 4 3 21 21 C 1.38061 * 120.20890 * 359.97438 * 20 5 4 22 22 C 1.38209 * 120.26602 * 0.04083 * 21 20 5 23 23 Cl 1.73596 * 119.97596 * 179.70383 * 22 21 20 24 24 H 1.07999 * 120.13102 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.81325 * 359.97438 * 7 6 5 26 26 H 1.07996 * 119.81130 * 180.25450 * 8 7 6 27 27 H 1.08003 * 120.00130 * 179.72299 * 9 8 7 28 28 H 0.97008 * 119.99326 * 180.02562 * 14 13 11 29 29 H 1.08005 * 120.18516 * 0.02562 * 19 6 5 30 30 H 1.07998 * 119.89554 * 179.97438 * 20 5 4 31 31 H 1.07997 * 119.86972 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2676 -0.1834 -1.1925 5 6 4.6578 -0.1820 -1.1836 6 6 5.4088 -0.3778 -2.4487 7 6 4.7186 -0.5689 -3.6484 8 6 5.4110 -0.7474 -4.8334 9 6 6.7882 -0.7491 -4.8418 10 6 7.4993 -0.5632 -3.6415 11 6 8.9136 -0.5637 -3.6455 12 1 9.4559 -0.0410 -2.8715 13 6 9.6101 -1.2417 -4.6521 14 7 8.9978 -2.1394 -5.3805 15 14 11.4144 -0.8648 -4.9556 16 1 12.1938 -1.1512 -3.7246 17 1 11.9164 -1.7108 -6.0681 18 1 11.5670 0.5678 -5.3160 19 6 6.7961 -0.3768 -2.4390 20 6 5.3461 0.0037 0.0153 21 6 4.6512 0.1867 1.1941 22 6 3.2691 0.1865 1.1952 23 17 2.4029 0.4096 2.6830 24 1 2.7315 -0.3265 -2.1190 25 1 3.6386 -0.5739 -3.6516 26 1 4.8682 -0.8902 -5.7560 27 1 7.3224 -0.8934 -5.7693 28 1 9.4809 -2.6096 -6.0781 29 1 7.3326 -0.2341 -1.5126 30 1 6.4261 0.0043 0.0214 31 1 5.1897 0.3304 2.1191 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240400461.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:03 Heat of formation + Delta-G solvation = 56.474771 kcal Electronic energy + Delta-G solvation = -17714.223110 eV Core-core repulsion = 14757.638064 eV Total energy + Delta-G solvation = -2956.585047 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.68140 -37.63678 -36.55459 -36.34952 -33.93600 -31.85412 -31.51686 -29.99538 -28.05219 -25.58429 -23.92553 -23.05857 -20.92210 -20.43333 -18.66552 -17.00517 -16.77922 -15.74531 -15.46760 -14.84840 -14.52237 -14.35226 -13.73534 -13.35535 -13.23508 -13.21846 -12.86110 -12.74338 -12.46085 -12.09897 -11.87940 -11.66312 -11.46523 -11.19773 -11.11840 -11.01423 -10.67125 -10.56071 -9.92069 -9.55600 -9.35978 -9.08042 -8.94001 -7.66807 -7.22047 -6.88571 -4.51384 0.61054 1.05508 1.94031 2.54835 2.61351 2.68935 3.00232 3.01695 3.07624 3.20974 3.77553 3.83525 3.89015 4.53116 4.69181 5.01939 5.16610 5.28662 5.44261 5.53145 5.71157 6.00532 6.08763 6.17407 6.22784 6.41283 6.64191 6.75078 6.90094 7.06151 7.15561 7.35772 7.41678 7.62258 7.83425 7.86792 8.07831 8.44973 8.73174 8.76960 10.06427 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.003594 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.083661 B = 7788.651290 C = 8603.226501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.260 3.740 3 C -0.021 4.021 4 C -0.064 4.064 5 C 0.001 3.999 6 C -0.050 4.050 7 C -0.217 4.217 8 C -0.107 4.107 9 C -0.148 4.148 10 C 0.107 3.893 11 C -0.464 4.464 12 H 0.079 0.921 13 C 0.077 3.923 14 N -0.793 5.793 15 Si 0.909 3.091 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.198 4.198 20 C -0.080 4.080 21 C -0.105 4.105 22 C -0.016 4.016 23 Cl -0.068 7.068 24 H 0.144 0.856 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.283 0.717 29 H 0.100 0.900 30 H 0.146 0.854 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 3.000 7.961 9.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.055 4.055 3 C -0.025 4.025 4 C -0.085 4.085 5 C 0.001 3.999 6 C -0.050 4.050 7 C -0.236 4.236 8 C -0.126 4.126 9 C -0.167 4.167 10 C 0.104 3.896 11 C -0.493 4.493 12 H 0.097 0.903 13 C -0.142 4.142 14 N -0.418 5.418 15 Si 0.733 3.267 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.188 1.188 19 C -0.217 4.217 20 C -0.099 4.099 21 C -0.123 4.123 22 C -0.045 4.045 23 Cl -0.039 7.039 24 H 0.161 0.839 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.138 0.862 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.163 0.837 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.584 2.834 7.908 10.087 hybrid contribution 1.181 0.009 -0.094 1.185 sum -4.403 2.843 7.813 9.408 Atomic orbital electron populations 1.81187 1.11818 1.08645 1.07253 1.25469 0.92469 0.93837 0.93760 1.15706 0.84470 1.08728 0.93582 1.21330 0.93893 0.97171 0.96105 1.19159 0.91888 0.94705 0.94170 1.18179 0.93090 1.03697 0.90061 1.20431 0.97139 1.13477 0.92600 1.20650 0.94870 1.00957 0.96102 1.21489 0.92371 1.04006 0.98869 1.17533 0.93374 0.88358 0.90318 1.19542 0.91276 1.28978 1.09540 0.90268 1.25898 1.00987 0.92837 0.94431 1.69794 1.38873 1.16478 1.16681 0.86353 0.81791 0.79684 0.78866 1.18930 1.20312 1.18761 1.21079 0.91662 1.11648 0.97358 1.21585 1.01370 0.96272 0.90669 1.20908 0.90908 1.00900 0.99614 1.20841 0.92524 1.05175 0.85941 1.98375 1.76859 1.95419 1.33208 0.83856 0.88896 0.88931 0.86219 0.90643 0.88183 0.83656 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.50 18.54 41.84 0.78 -5.73 16 2 C 0.26 3.72 14.37 -22.47 -0.32 3.40 16 3 C -0.02 -0.28 5.73 -106.92 -0.61 -0.89 16 4 C -0.06 -0.91 9.13 -38.83 -0.35 -1.26 16 5 C 0.00 0.02 5.87 -104.95 -0.62 -0.60 16 6 C -0.05 -0.97 5.87 -104.97 -0.62 -1.58 16 7 C -0.22 -4.27 9.43 -38.97 -0.37 -4.63 16 8 C -0.11 -2.28 10.01 -39.71 -0.40 -2.67 16 9 C -0.15 -3.52 8.69 -38.82 -0.34 -3.85 16 10 C 0.11 2.57 5.56 -106.87 -0.59 1.98 16 11 C -0.46 -11.28 9.05 -37.74 -0.34 -11.62 16 12 H 0.08 1.83 7.90 -52.49 -0.41 1.41 16 13 C 0.08 1.79 5.14 -17.35 -0.09 1.70 16 14 N -0.79 -19.20 10.96 55.55 0.61 -18.59 16 15 Si 0.91 17.43 29.59 -169.99 -5.03 12.40 16 16 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 17 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 19 C -0.20 -4.22 9.17 -38.53 -0.35 -4.57 16 20 C -0.08 -1.07 9.41 -39.19 -0.37 -1.44 16 21 C -0.10 -1.20 9.80 -39.66 -0.39 -1.59 16 22 C -0.02 -0.19 6.35 -39.00 -0.25 -0.44 16 23 Cl -0.07 -0.79 28.01 -51.86 -1.45 -2.25 16 24 H 0.14 1.91 6.18 -52.49 -0.32 1.58 16 25 H 0.09 1.58 6.18 -52.49 -0.32 1.25 16 26 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 27 H 0.12 2.96 6.18 -52.48 -0.32 2.64 16 28 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 29 H 0.10 1.92 6.18 -52.48 -0.32 1.60 16 30 H 0.15 1.82 6.18 -52.49 -0.32 1.50 16 31 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -25.15 295.21 -8.67 -33.83 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -2.02 Total: 3.97 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -6.01 Total: -28.08 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 1.38 Total: -24.31 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.45 Total: -2.25 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -25.15 -8.67 -33.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240400461.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.300 kcal (2) G-P(sol) polarization free energy of solvation -25.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds