Wall clock time and date at job start Tue Mar 31 2020 05:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39473 * 120.10220 * 81.21161 * 3 2 1 5 5 C 1.39025 * 119.73460 * 180.02562 * 4 3 2 6 6 C 1.48424 * 120.02659 * 179.97438 * 5 4 3 7 7 C 1.39722 * 119.99895 * 359.75215 * 6 5 4 8 8 C 1.38394 * 120.37799 * 179.76380 * 7 6 5 9 9 C 1.37722 * 120.37532 * 0.51029 * 8 7 6 10 10 C 1.40749 * 119.99069 * 359.74086 * 9 8 7 11 11 C 1.41425 * 120.18589 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99973 * 154.80632 * 11 10 9 13 13 C 1.39930 * 120.00021 * 334.79936 * 11 10 9 14 14 N 1.30828 * 119.99910 * 342.74490 * 13 11 10 15 15 Si 1.86803 * 119.99729 * 162.74433 * 13 11 10 16 16 H 1.48494 * 109.47086 * 59.99951 * 15 13 11 17 17 H 1.48503 * 109.47018 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46774 * 299.99940 * 15 13 11 19 19 C 1.38724 * 119.99745 * 180.02562 * 6 5 4 20 20 C 1.39477 * 119.94140 * 359.97438 * 5 4 3 21 21 C 1.38061 * 120.20890 * 359.97438 * 20 5 4 22 22 C 1.38209 * 120.26602 * 0.04083 * 21 20 5 23 23 Cl 1.73596 * 119.97596 * 179.70383 * 22 21 20 24 24 H 1.07999 * 120.13102 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.81325 * 359.97438 * 7 6 5 26 26 H 1.07996 * 119.81130 * 180.25450 * 8 7 6 27 27 H 1.08003 * 120.00130 * 179.72299 * 9 8 7 28 28 H 0.97008 * 119.99326 * 180.02562 * 14 13 11 29 29 H 1.08005 * 120.18516 * 0.02562 * 19 6 5 30 30 H 1.07998 * 119.89554 * 179.97438 * 20 5 4 31 31 H 1.07997 * 119.86972 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2676 -0.1834 -1.1925 5 6 4.6578 -0.1820 -1.1836 6 6 5.4088 -0.3778 -2.4487 7 6 4.7186 -0.5689 -3.6484 8 6 5.4110 -0.7474 -4.8334 9 6 6.7882 -0.7491 -4.8418 10 6 7.4993 -0.5632 -3.6415 11 6 8.9136 -0.5637 -3.6455 12 1 9.4559 -0.0410 -2.8715 13 6 9.6101 -1.2417 -4.6521 14 7 8.9978 -2.1394 -5.3805 15 14 11.4144 -0.8648 -4.9556 16 1 12.1938 -1.1512 -3.7246 17 1 11.9164 -1.7108 -6.0681 18 1 11.5670 0.5678 -5.3160 19 6 6.7961 -0.3768 -2.4390 20 6 5.3461 0.0037 0.0153 21 6 4.6512 0.1867 1.1941 22 6 3.2691 0.1865 1.1952 23 17 2.4029 0.4096 2.6830 24 1 2.7315 -0.3265 -2.1190 25 1 3.6386 -0.5739 -3.6516 26 1 4.8682 -0.8902 -5.7560 27 1 7.3224 -0.8934 -5.7693 28 1 9.4809 -2.6096 -6.0781 29 1 7.3326 -0.2341 -1.5126 30 1 6.4261 0.0043 0.0214 31 1 5.1897 0.3304 2.1191 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240400461.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:02 Heat of formation + Delta-G solvation = 47.297060 kcal Electronic energy + Delta-G solvation = -17714.621086 eV Core-core repulsion = 14757.638064 eV Total energy + Delta-G solvation = -2956.983022 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84735 -39.13466 -37.60229 -37.54466 -35.57780 -33.19572 -32.66976 -31.62685 -29.47184 -27.24253 -25.12693 -24.32137 -22.41696 -21.95465 -19.98783 -18.56139 -17.92597 -17.16428 -16.81817 -16.33600 -15.83550 -15.45859 -15.02504 -14.90250 -14.64248 -14.40362 -14.09733 -14.00482 -13.84127 -13.53125 -13.16703 -13.04867 -12.81889 -12.65921 -12.48041 -12.26539 -12.13652 -11.93036 -11.54089 -11.17017 -11.01459 -10.25537 -10.12102 -9.36821 -8.72743 -8.58703 -6.30927 -0.50424 -0.05816 0.92823 1.03228 1.16518 1.42883 1.48066 1.52707 1.56673 1.93162 2.24214 2.64171 2.66201 2.91597 3.67524 3.77185 3.83547 4.10626 4.20867 4.30663 4.52263 4.61013 4.85588 4.92513 4.96813 5.13263 5.17608 5.19524 5.36619 5.56494 5.59189 5.73658 6.00569 6.11691 6.18627 6.29440 6.38729 6.72058 6.97700 7.05141 8.37432 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.003594 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.083661 B = 7788.651290 C = 8603.226501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.274 3.726 3 C -0.025 4.025 4 C -0.055 4.055 5 C -0.025 4.025 6 C -0.042 4.042 7 C -0.220 4.220 8 C -0.112 4.112 9 C -0.182 4.182 10 C 0.077 3.923 11 C -0.500 4.500 12 H 0.081 0.919 13 C 0.037 3.963 14 N -0.828 5.828 15 Si 0.977 3.023 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.262 1.262 19 C -0.210 4.210 20 C -0.071 4.071 21 C -0.092 4.092 22 C -0.006 4.006 23 Cl -0.056 7.056 24 H 0.150 0.850 25 H 0.123 0.877 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.286 0.714 29 H 0.116 0.884 30 H 0.153 0.847 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 3.540 9.959 11.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.041 4.041 3 C -0.030 4.030 4 C -0.075 4.075 5 C -0.025 4.025 6 C -0.042 4.042 7 C -0.239 4.239 8 C -0.131 4.131 9 C -0.202 4.202 10 C 0.075 3.925 11 C -0.529 4.529 12 H 0.099 0.901 13 C -0.178 4.178 14 N -0.455 5.455 15 Si 0.798 3.202 16 H -0.182 1.182 17 H -0.197 1.197 18 H -0.186 1.186 19 C -0.230 4.230 20 C -0.090 4.090 21 C -0.110 4.110 22 C -0.035 4.035 23 Cl -0.027 7.027 24 H 0.167 0.833 25 H 0.141 0.859 26 H 0.128 0.872 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.171 0.829 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.032 3.377 9.917 12.089 hybrid contribution 1.105 -0.124 -0.535 1.234 sum -4.927 3.253 9.382 11.085 Atomic orbital electron populations 1.81211 1.12577 1.09673 1.08039 1.25522 0.92473 0.93050 0.93025 1.15649 0.83924 1.09569 0.93825 1.21297 0.93280 0.96263 0.96683 1.18954 0.92325 0.97860 0.93372 1.18459 0.92664 1.01319 0.91746 1.20826 0.98738 1.12163 0.92130 1.20912 0.94136 1.00283 0.97744 1.21421 0.93557 1.06934 0.98261 1.17889 0.93948 0.89225 0.91473 1.19818 0.91956 1.30362 1.10796 0.90120 1.26685 1.05076 0.92201 0.93838 1.69870 1.40580 1.17536 1.17482 0.85319 0.76618 0.79314 0.78901 1.18210 1.19746 1.18628 1.21309 0.92808 1.11737 0.97116 1.21714 1.01863 0.94922 0.90454 1.21163 0.90432 0.99253 1.00144 1.21018 0.93035 1.03449 0.86018 1.98393 1.76713 1.95209 1.32389 0.83261 0.85911 0.87165 0.88363 0.90312 0.86613 0.82938 0.80842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -13.01 18.54 19.00 0.35 -12.66 16 2 C 0.27 7.22 14.37 88.33 1.27 8.49 16 3 C -0.03 -0.61 5.73 -21.36 -0.12 -0.73 16 4 C -0.05 -1.40 9.13 22.76 0.21 -1.20 16 5 C -0.02 -0.72 5.87 -20.08 -0.12 -0.84 16 6 C -0.04 -1.57 5.87 -20.09 -0.12 -1.69 16 7 C -0.22 -8.41 9.43 22.67 0.21 -8.19 16 8 C -0.11 -4.82 10.01 22.18 0.22 -4.60 16 9 C -0.18 -9.03 8.69 22.76 0.20 -8.83 16 10 C 0.08 3.83 5.56 -21.32 -0.12 3.71 16 11 C -0.50 -25.15 9.05 23.46 0.21 -24.94 16 12 H 0.08 3.84 7.90 -2.91 -0.02 3.82 16 13 C 0.04 1.76 5.14 85.25 0.44 2.20 16 14 N -0.83 -41.78 10.96 21.82 0.24 -41.54 16 15 Si 0.98 36.39 29.59 68.60 2.03 38.42 16 16 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 17 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 18 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 19 C -0.21 -8.99 9.17 22.95 0.21 -8.78 16 20 C -0.07 -1.68 9.41 22.53 0.21 -1.47 16 21 C -0.09 -1.74 9.80 22.22 0.22 -1.52 16 22 C -0.01 -0.13 6.35 22.64 0.14 0.02 16 23 Cl -0.06 -1.14 28.01 -2.72 -0.08 -1.21 16 24 H 0.15 3.58 6.18 -2.91 -0.02 3.56 16 25 H 0.12 3.88 6.18 -2.91 -0.02 3.87 16 26 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 27 H 0.10 5.18 6.18 -2.91 -0.02 5.16 16 28 H 0.29 13.18 8.30 -92.70 -0.77 12.41 16 29 H 0.12 4.40 6.18 -2.91 -0.02 4.38 16 30 H 0.15 3.41 6.18 -2.91 -0.02 3.39 16 31 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -55.71 295.21 6.81 -48.90 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 1.19 Total: 16.47 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 3.07 Total: -48.37 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.59 Total: -54.20 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.21 kcal Total: -55.71 6.81 -48.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240400461.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.197 kcal (2) G-P(sol) polarization free energy of solvation -55.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds