Wall clock time and date at job start Tue Mar 31 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39394 * 120.08837 * 158.10543 * 3 2 1 5 5 C 1.39323 * 119.70973 * 180.27441 * 4 3 2 6 6 C 1.47981 * 120.05180 * 179.77370 * 5 4 3 7 7 C 1.39939 * 119.88100 * 179.72348 * 6 5 4 8 8 C 1.36254 * 120.12446 * 180.02562 * 7 6 5 9 9 C 1.40932 * 119.87118 * 0.02562 * 8 7 6 10 10 C 1.41025 * 120.11248 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00075 * 330.26350 * 10 9 8 12 12 C 1.40008 * 119.99889 * 149.99529 * 10 9 8 13 13 N 1.30808 * 119.99553 * 161.83971 * 12 10 9 14 14 Si 1.86796 * 119.99982 * 341.83788 * 12 10 9 15 15 H 1.48499 * 109.47343 * 95.40177 * 14 12 10 16 16 H 1.48503 * 109.47148 * 215.39722 * 14 12 10 17 17 H 1.48497 * 109.47231 * 335.40000 * 14 12 10 18 18 C 1.40931 * 119.77005 * 0.24857 * 9 8 7 19 19 C 1.36247 * 119.87407 * 359.48972 * 18 9 8 20 20 C 1.39759 * 119.88948 * 359.49326 * 5 4 3 21 21 C 1.37962 * 120.18281 * 0.25559 * 20 5 4 22 22 C 1.38292 * 120.29372 * 0.02562 * 21 20 5 23 23 Cl 1.73604 * 119.94649 * 179.97438 * 22 21 20 24 24 H 1.07991 * 120.14673 * 0.04090 * 4 3 2 25 25 H 1.07998 * 119.93657 * 359.97438 * 7 6 5 26 26 H 1.07997 * 120.06339 * 179.97438 * 8 7 6 27 27 H 0.97002 * 119.98966 * 179.97438 * 13 12 10 28 28 H 1.08004 * 120.06407 * 179.72705 * 18 9 8 29 29 H 1.08008 * 119.93946 * 180.25394 * 19 18 9 30 30 H 1.07997 * 119.90385 * 180.27596 * 20 5 4 31 31 H 1.08001 * 119.85477 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2662 1.1201 -0.4498 5 6 4.6594 1.1100 -0.4517 6 6 5.4084 2.2924 -0.9322 7 6 6.8077 2.2806 -0.9272 8 6 7.5023 3.3667 -1.3681 9 6 6.8088 4.5036 -1.8292 10 6 7.5226 5.6308 -2.2861 11 1 8.4963 5.8558 -1.8766 12 6 6.9714 6.4549 -3.2747 13 7 7.4354 7.6652 -3.4506 14 14 5.5736 5.8260 -4.3423 15 1 4.2761 6.2628 -3.7670 16 1 5.7151 6.3728 -5.7158 17 1 5.6182 4.3426 -4.3931 18 6 5.3995 4.5123 -1.8267 19 6 4.7149 3.4188 -1.3887 20 6 5.3484 -0.0164 0.0064 21 6 4.6527 -1.1199 0.4555 22 6 3.2698 -1.1203 0.4553 23 17 2.4035 -2.5140 1.0217 24 1 2.7297 1.9899 -0.7987 25 1 7.3381 1.4092 -0.5724 26 1 8.5822 3.3567 -1.3634 27 1 7.0537 8.2360 -4.1358 28 1 4.8632 5.3827 -2.1749 29 1 3.6348 3.4228 -1.3902 30 1 6.4283 -0.0227 0.0092 31 1 5.1905 -1.9873 0.8087 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240400695.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:10 Heat of formation + Delta-G solvation = 56.188075 kcal Electronic energy + Delta-G solvation = -17782.281951 eV Core-core repulsion = 14825.684473 eV Total energy + Delta-G solvation = -2956.597479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.62180 -37.93433 -36.49128 -36.35762 -34.08013 -32.07912 -31.55663 -30.06329 -29.23575 -25.36329 -24.13843 -22.56173 -21.51080 -20.40172 -18.57333 -17.83523 -16.58792 -15.95916 -15.58683 -15.03513 -14.29726 -14.28653 -13.87493 -13.77613 -13.24559 -12.99670 -12.82730 -12.82304 -12.62195 -12.51547 -12.26706 -11.82009 -11.61138 -11.29949 -11.04412 -10.96840 -10.82392 -10.43970 -10.17774 -9.80461 -9.42623 -9.04387 -8.92296 -8.06873 -7.41972 -7.29930 -4.74493 0.65987 1.09946 2.04086 2.30566 2.55658 2.64923 2.90164 3.01726 3.09573 3.17412 3.73919 3.82915 3.83082 4.35082 4.74169 5.09265 5.18987 5.22379 5.31552 5.50513 5.66312 5.83129 5.95617 6.11754 6.17301 6.30977 6.38392 6.55387 6.72181 6.76344 6.85628 7.18687 7.37129 7.44541 7.54682 7.60301 7.82128 8.01669 8.34622 8.45598 9.69653 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.030175 B = 0.003876 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.701662 B = 7222.836185 C = 7959.741566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.260 3.740 3 C -0.008 4.008 4 C -0.091 4.091 5 C 0.033 3.967 6 C -0.219 4.219 7 C -0.050 4.050 8 C -0.212 4.212 9 C 0.099 3.901 10 C -0.420 4.420 11 H 0.097 0.903 12 C 0.080 3.920 13 N -0.785 5.785 14 Si 0.916 3.084 15 H -0.266 1.266 16 H -0.287 1.287 17 H -0.240 1.240 18 C -0.242 4.242 19 C -0.045 4.045 20 C -0.109 4.109 21 C -0.094 4.094 22 C -0.038 4.038 23 Cl -0.074 7.074 24 H 0.138 0.862 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.292 0.708 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.138 0.862 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.748 -11.499 3.763 12.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.055 4.055 3 C -0.012 4.012 4 C -0.112 4.112 5 C 0.033 3.967 6 C -0.220 4.220 7 C -0.069 4.069 8 C -0.231 4.231 9 C 0.095 3.905 10 C -0.446 4.446 11 H 0.114 0.886 12 C -0.143 4.143 13 N -0.407 5.407 14 Si 0.741 3.259 15 H -0.192 1.192 16 H -0.214 1.214 17 H -0.163 1.163 18 C -0.261 4.261 19 C -0.063 4.063 20 C -0.128 4.128 21 C -0.112 4.112 22 C -0.067 4.067 23 Cl -0.045 7.045 24 H 0.156 0.844 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.103 0.897 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.156 0.844 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.520 -11.321 3.691 12.736 hybrid contribution -0.176 -0.089 -0.450 0.491 sum -4.697 -11.410 3.242 12.757 Atomic orbital electron populations 1.81180 1.11899 1.07565 1.08519 1.25550 0.92575 0.93645 0.93769 1.15681 0.84253 0.95320 1.05989 1.21236 0.93902 0.96414 0.99622 1.18923 0.91582 0.93459 0.92739 1.17883 0.92645 0.94449 1.16995 1.20474 0.92692 0.97198 0.96496 1.20725 0.98442 0.93948 1.10028 1.17845 0.91544 0.91730 0.89361 1.19736 1.04756 1.03732 1.16358 0.88552 1.26369 0.97162 0.93227 0.97507 1.69677 1.37474 1.06001 1.27501 0.86218 0.79867 0.82232 0.77578 1.19206 1.21401 1.16307 1.20734 0.94563 0.99042 1.11758 1.20463 0.97635 0.92605 0.95573 1.21392 1.00662 0.92002 0.98746 1.20808 0.90915 0.99439 1.00064 1.20708 0.92375 0.88504 1.05158 1.98362 1.76985 1.41338 1.87821 0.84401 0.88086 0.87747 0.89750 0.87905 0.88338 0.84425 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.69 18.54 41.84 0.78 -5.91 16 2 C 0.26 3.81 14.36 -22.48 -0.32 3.49 16 3 C -0.01 -0.11 5.73 -106.93 -0.61 -0.73 16 4 C -0.09 -1.28 9.13 -38.75 -0.35 -1.63 16 5 C 0.03 0.50 5.87 -104.93 -0.62 -0.12 16 6 C -0.22 -3.88 5.90 -104.63 -0.62 -4.50 16 7 C -0.05 -0.90 9.36 -39.66 -0.37 -1.27 16 8 C -0.21 -4.29 9.73 -39.28 -0.38 -4.67 16 9 C 0.10 2.22 5.09 -106.80 -0.54 1.68 16 10 C -0.42 -10.14 9.55 -37.86 -0.36 -10.50 16 11 H 0.10 2.42 8.06 -52.48 -0.42 2.00 16 12 C 0.08 1.88 5.40 -17.32 -0.09 1.79 16 13 N -0.79 -18.93 13.93 55.55 0.77 -18.15 16 14 Si 0.92 18.84 24.52 -169.99 -4.17 14.67 16 15 H -0.27 -5.33 6.71 56.52 0.38 -4.95 16 16 H -0.29 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.24 -5.06 6.87 56.52 0.39 -4.68 16 18 C -0.24 -5.19 7.11 -39.28 -0.28 -5.47 16 19 C -0.04 -0.85 9.35 -39.66 -0.37 -1.22 16 20 C -0.11 -1.36 9.42 -39.11 -0.37 -1.72 16 21 C -0.09 -1.05 9.80 -39.66 -0.39 -1.44 16 22 C -0.04 -0.48 6.36 -38.95 -0.25 -0.73 16 23 Cl -0.07 -0.88 28.01 -51.86 -1.45 -2.34 16 24 H 0.14 1.84 6.17 -52.49 -0.32 1.52 16 25 H 0.10 1.46 6.16 -52.49 -0.32 1.14 16 26 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 27 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 28 H 0.10 2.21 4.77 -52.48 -0.25 1.96 16 29 H 0.10 1.62 6.17 -52.48 -0.32 1.30 16 30 H 0.14 1.49 6.16 -52.49 -0.32 1.16 16 31 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 289.75 15.07 4.37 4.37 Total: -1.00 -24.36 289.75 -7.62 -31.98 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -1.98 Total: 2.43 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -5.93 Total: -27.04 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 1.55 Total: -24.06 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.17 Total: 14.67 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.45 Total: -2.34 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -24.36 -7.62 -31.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240400695.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.166 kcal (2) G-P(sol) polarization free energy of solvation -24.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds