Wall clock time and date at job start Tue Mar 31 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39375 * 120.08644 * 190.15489 * 3 2 1 5 5 C 1.39364 * 119.70278 * 179.97438 * 4 3 2 6 6 C 1.47877 * 120.05456 * 180.02562 * 5 4 3 7 7 C 1.39163 * 120.33876 * 309.97627 * 6 5 4 8 8 C 1.38083 * 119.98913 * 179.97438 * 7 6 5 9 9 C 1.38930 * 120.66980 * 0.02562 * 8 7 6 10 10 C 1.36434 * 120.68803 * 359.97438 * 9 8 7 11 11 C 1.40749 * 119.98719 * 359.74652 * 10 9 8 12 12 C 1.40874 * 120.33313 * 180.28116 * 11 10 9 13 13 H 1.07997 * 120.00401 * 149.52336 * 12 11 10 14 14 C 1.40068 * 119.99945 * 329.51354 * 12 11 10 15 15 N 1.30773 * 120.00091 * 162.41759 * 14 12 11 16 16 Si 1.86796 * 119.99969 * 342.42565 * 14 12 11 17 17 H 1.48506 * 109.47175 * 95.37264 * 16 14 12 18 18 H 1.48498 * 109.47202 * 215.37801 * 16 14 12 19 19 H 1.48505 * 109.47255 * 335.37498 * 16 14 12 20 20 C 1.39800 * 119.88690 * 0.02562 * 5 4 3 21 21 C 1.37956 * 120.17443 * 359.97191 * 20 5 4 22 22 C 1.38295 * 120.29488 * 0.28184 * 21 20 5 23 23 Cl 1.73602 * 119.94170 * 179.72210 * 22 21 20 24 24 H 1.07992 * 120.15156 * 359.97438 * 4 3 2 25 25 H 1.08004 * 120.00715 * 0.02562 * 7 6 5 26 26 H 1.07997 * 119.66583 * 179.97438 * 8 7 6 27 27 H 1.07997 * 119.65379 * 179.97438 * 9 8 7 28 28 H 1.07999 * 120.00805 * 179.97438 * 10 9 8 29 29 H 0.97000 * 119.99852 * 180.02562 * 15 14 12 30 30 H 1.07998 * 119.91520 * 179.97438 * 20 5 4 31 31 H 1.08003 * 119.84924 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2661 1.1880 0.2126 5 6 4.6597 1.1794 0.2115 6 6 5.4083 2.4346 0.4369 7 6 5.0990 3.5783 -0.2932 8 6 5.8023 4.7466 -0.0765 9 6 6.8215 4.7958 0.8663 10 6 7.1477 3.6910 1.5974 11 6 6.4453 2.4867 1.4037 12 6 6.7721 1.3432 2.1588 13 1 6.0085 0.6181 2.3987 14 6 8.0874 1.1464 2.5982 15 7 8.3344 0.3003 3.5642 16 14 9.4887 2.0929 1.8045 17 1 9.7856 3.3051 2.6093 18 1 10.6963 1.2309 1.7438 19 1 9.0981 2.4952 0.4294 20 6 5.3487 -0.0180 -0.0030 21 6 4.6528 -1.1905 -0.2129 22 6 3.2698 -1.1894 -0.2185 23 17 2.4033 -2.6689 -0.4908 24 1 2.7296 2.1107 0.3775 25 1 4.3084 3.5523 -1.0285 26 1 5.5582 5.6310 -0.6463 27 1 7.3613 5.7181 1.0221 28 1 7.9423 3.7414 2.3271 29 1 9.2453 0.1643 3.8687 30 1 6.4287 -0.0251 -0.0044 31 1 5.1904 -2.1126 -0.3777 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240401996.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:13 Heat of formation + Delta-G solvation = 56.470177 kcal Electronic energy + Delta-G solvation = -18355.879527 eV Core-core repulsion = 15399.294281 eV Total energy + Delta-G solvation = -2956.585246 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.43836 -37.81436 -36.33741 -36.14582 -33.86518 -32.01361 -31.22983 -30.52603 -28.37050 -25.40251 -23.63183 -22.85654 -21.26095 -20.46787 -18.25092 -17.59033 -16.28534 -15.90721 -15.50036 -14.87681 -14.24527 -14.16618 -13.82597 -13.75266 -13.20181 -12.96304 -12.75030 -12.63177 -12.55144 -12.21267 -11.86657 -11.65692 -11.32107 -11.23684 -11.01863 -10.90682 -10.71425 -10.46620 -9.98145 -9.80349 -9.34919 -8.78243 -8.58343 -7.83186 -7.56452 -7.15872 -4.68846 0.92740 1.38168 2.18211 2.38380 2.51325 2.79913 2.97255 3.06309 3.16894 3.22703 3.79998 3.98943 4.06773 4.32172 4.98066 5.17917 5.33480 5.52056 5.61482 5.77992 5.83418 5.93069 6.08418 6.20792 6.32657 6.43307 6.53809 6.69523 6.86798 6.97284 6.99337 7.19411 7.44956 7.55847 7.60317 7.67730 7.89200 8.13661 8.42242 8.56626 9.84301 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.018929 B = 0.005713 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.822399 B = 4899.571307 C = 5961.630983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.265 3.735 3 C -0.029 4.029 4 C -0.072 4.072 5 C 0.025 3.975 6 C -0.185 4.185 7 C -0.054 4.054 8 C -0.246 4.246 9 C -0.070 4.070 10 C -0.229 4.229 11 C 0.111 3.889 12 C -0.438 4.438 13 H 0.098 0.902 14 C 0.085 3.915 15 N -0.793 5.793 16 Si 0.907 3.093 17 H -0.269 1.269 18 H -0.289 1.289 19 H -0.241 1.241 20 C -0.052 4.052 21 C -0.112 4.112 22 C -0.015 4.015 23 Cl -0.074 7.074 24 H 0.136 0.864 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.288 0.712 30 H 0.147 0.853 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 -0.860 -6.033 6.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.050 4.050 3 C -0.033 4.033 4 C -0.092 4.092 5 C 0.025 3.975 6 C -0.186 4.186 7 C -0.072 4.072 8 C -0.265 4.265 9 C -0.088 4.088 10 C -0.248 4.248 11 C 0.108 3.892 12 C -0.465 4.465 13 H 0.116 0.884 14 C -0.137 4.137 15 N -0.415 5.415 16 Si 0.733 3.267 17 H -0.195 1.195 18 H -0.216 1.216 19 H -0.164 1.164 20 C -0.071 4.071 21 C -0.131 4.131 22 C -0.044 4.044 23 Cl -0.045 7.045 24 H 0.154 0.846 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.165 0.835 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.014 -1.189 -5.851 6.688 hybrid contribution 1.111 0.227 -0.029 1.134 sum -1.903 -0.962 -5.880 6.255 Atomic orbital electron populations 1.81160 1.11921 1.07606 1.09224 1.25544 0.92542 0.93467 0.93489 1.15653 0.84223 0.93838 1.09592 1.21332 0.93829 0.95744 0.98327 1.18760 0.91069 0.93945 0.93753 1.18400 1.05099 0.91686 1.03440 1.20708 0.97144 0.92237 0.97112 1.20314 1.03075 0.97641 1.05518 1.20455 0.96216 0.96959 0.95177 1.20806 1.05378 0.93803 1.04825 1.17597 0.89868 0.92525 0.89205 1.19521 0.95693 1.05728 1.25573 0.88390 1.26223 1.00876 0.94079 0.92473 1.69663 1.23700 1.28985 1.19150 0.86368 0.78776 0.78910 0.82664 1.19504 1.21584 1.16432 1.21677 1.01573 0.90456 0.93351 1.20904 0.90780 0.99721 1.01653 1.20834 0.92437 0.85760 1.05345 1.98359 1.76970 1.34443 1.94770 0.84642 0.88355 0.88620 0.88784 0.87998 0.90086 0.83536 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.26 18.54 41.84 0.78 -6.48 16 2 C 0.26 4.22 14.36 -22.48 -0.32 3.90 16 3 C -0.03 -0.44 5.73 -106.94 -0.61 -1.06 16 4 C -0.07 -1.13 9.22 -38.74 -0.36 -1.49 16 5 C 0.03 0.44 4.93 -104.95 -0.52 -0.08 16 6 C -0.18 -3.65 5.52 -104.22 -0.58 -4.22 16 7 C -0.05 -0.99 9.50 -39.29 -0.37 -1.36 16 8 C -0.25 -4.52 10.03 -39.38 -0.40 -4.92 16 9 C -0.07 -1.35 9.96 -39.98 -0.40 -1.75 16 10 C -0.23 -4.91 7.10 -39.28 -0.28 -5.18 16 11 C 0.11 2.44 5.09 -106.56 -0.54 1.90 16 12 C -0.44 -10.15 7.51 -37.90 -0.28 -10.43 16 13 H 0.10 2.41 7.04 -52.49 -0.37 2.04 16 14 C 0.08 1.95 5.41 -17.32 -0.09 1.86 16 15 N -0.79 -18.89 13.93 55.55 0.77 -18.11 16 16 Si 0.91 18.42 24.52 -169.99 -4.17 14.25 16 17 H -0.27 -5.40 6.72 56.52 0.38 -5.02 16 18 H -0.29 -5.72 7.11 56.52 0.40 -5.31 16 19 H -0.24 -4.98 6.85 56.52 0.39 -4.60 16 20 C -0.05 -0.85 8.09 -39.10 -0.32 -1.17 16 21 C -0.11 -1.62 9.80 -39.66 -0.39 -2.00 16 22 C -0.01 -0.22 6.36 -38.95 -0.25 -0.46 16 23 Cl -0.07 -1.03 28.01 -51.86 -1.45 -2.48 16 24 H 0.14 1.97 8.04 -52.49 -0.42 1.55 16 25 H 0.10 1.55 8.04 -52.48 -0.42 1.13 16 26 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 27 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.10 2.19 4.77 -52.49 -0.25 1.94 16 29 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 30 H 0.15 2.49 7.32 -52.49 -0.38 2.10 16 31 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 291.95 15.07 4.40 4.40 Total: -1.00 -23.96 291.95 -7.66 -31.62 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -2.29 Total: 3.26 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -5.70 Total: -26.46 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 1.55 Total: -24.60 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.17 Total: 14.25 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.45 Total: -2.48 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -23.96 -7.66 -31.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240401996.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.092 kcal (2) G-P(sol) polarization free energy of solvation -23.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds