Wall clock time and date at job start Tue Mar 31 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30703 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48495 * 109.46807 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46740 * 299.99107 * 3 2 1 6 6 H 1.48496 * 109.47484 * 59.99305 * 3 2 1 7 7 C 1.40146 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99509 * 180.02562 * 7 2 1 9 9 C 1.40742 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.33977 * 120.29011 * 355.60250 * 9 7 2 11 11 C 1.31609 * 119.90005 * 180.02562 * 10 9 7 12 12 C 1.39195 * 120.51758 * 0.02562 * 11 10 9 13 13 N 1.31992 * 120.60087 * 359.97438 * 12 11 10 14 14 C 1.32908 * 120.07376 * 0.02562 * 13 12 11 15 15 C 1.47679 * 120.25957 * 180.02562 * 14 13 12 16 16 C 1.40223 * 119.86243 * 45.49118 * 15 14 13 17 17 C 1.36209 * 120.07346 * 179.73196 * 16 15 14 18 18 C 1.39615 * 120.45028 * 0.55962 * 17 16 15 19 19 S 1.76149 * 131.52555 * 179.67936 * 18 17 16 20 20 C 1.70631 * 90.86229 * 180.02562 * 19 18 17 21 21 N 1.27872 * 111.58271 * 0.02562 * 20 19 18 22 22 C 1.34744 * 117.84116 * 359.97438 * 21 20 19 23 23 C 1.38820 * 119.86745 * 225.77043 * 15 14 13 24 24 H 0.97003 * 120.00051 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.73651 * 179.72380 * 11 10 9 26 26 H 1.08001 * 119.69821 * 179.97438 * 12 11 10 27 27 H 1.07998 * 119.96626 * 359.97438 * 16 15 14 28 28 H 1.08005 * 119.77860 * 180.29758 * 17 16 15 29 29 H 1.07995 * 124.20709 * 179.97438 * 20 19 18 30 30 H 1.08005 * 119.98170 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.7010 1.3464 0.0006 5 1 1.8824 2.3963 -1.2127 6 1 1.8822 2.3966 1.2123 7 6 2.0077 -1.2137 0.0005 8 1 3.0877 -1.2137 0.0010 9 6 1.3040 -2.4326 0.0005 10 7 -0.0328 -2.4410 0.0887 11 6 -0.6831 -3.5853 0.0886 12 6 0.0072 -4.7906 -0.0021 13 7 1.3242 -4.8057 -0.0899 14 6 2.0047 -3.6640 -0.0918 15 6 3.4781 -3.6761 -0.1904 16 6 4.1080 -4.5008 -1.1334 17 6 5.4665 -4.5113 -1.2318 18 6 6.2430 -3.7128 -0.3899 19 16 7.9874 -3.5056 -0.2587 20 6 7.7842 -2.3776 1.0053 21 7 6.5485 -2.1951 1.2788 22 6 5.6374 -2.8847 0.5647 23 6 4.2341 -2.8754 0.6548 24 1 -0.4850 0.8401 -0.0004 25 1 -1.7604 -3.5892 0.1643 26 1 -0.5397 -5.7219 -0.0007 27 1 3.5153 -5.1255 -1.7852 28 1 5.9465 -5.1447 -1.9631 29 1 8.5981 -1.8803 1.5119 30 1 3.7442 -2.2451 1.3823 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241865207.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:33 Heat of formation + Delta-G solvation = 100.530862 kcal Electronic energy + Delta-G solvation = -18677.463002 eV Core-core repulsion = 15757.124829 eV Total energy + Delta-G solvation = -2920.338174 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.047 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.02855 -38.96448 -36.45080 -34.28343 -32.43408 -31.53631 -29.83634 -28.72207 -26.30344 -24.75994 -23.30492 -22.41070 -21.62565 -20.24788 -18.21181 -17.71380 -16.36487 -16.14653 -15.53934 -15.20092 -14.92598 -14.38383 -14.29989 -13.67770 -13.57109 -13.16316 -12.85971 -12.59467 -11.83792 -11.60861 -11.55767 -11.45158 -11.34697 -10.94502 -10.53039 -10.27355 -10.00989 -9.70262 -9.64576 -9.41530 -9.23130 -8.46872 -7.97748 -7.64186 -7.39599 -6.69520 -4.85140 0.78874 1.45220 1.53805 1.96608 2.37663 2.70734 2.91252 2.96106 3.02947 3.09315 3.74537 4.17422 4.26965 4.49848 4.99468 5.19566 5.45707 5.52939 5.63977 5.76347 5.88543 5.90878 6.12599 6.33298 6.41520 6.50981 6.53149 6.77103 6.84921 6.89970 7.10086 7.24894 7.51557 7.88083 7.89434 8.21693 8.48316 9.06684 9.66643 9.92650 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.006825 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.925838 B = 4101.645932 C = 5614.452128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.698 5.698 2 C 0.065 3.935 3 Si 0.908 3.092 4 H -0.253 1.253 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.400 4.400 8 H 0.103 0.897 9 C 0.220 3.780 10 N -0.450 5.450 11 C 0.092 3.908 12 C -0.117 4.117 13 N -0.407 5.407 14 C -0.042 4.042 15 C 0.044 3.956 16 C -0.076 4.076 17 C -0.084 4.084 18 C -0.184 4.184 19 S 0.054 5.946 20 C 0.056 3.944 21 N -0.456 5.456 22 C 0.073 3.927 23 C -0.054 4.054 24 H 0.280 0.720 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.124 0.876 29 H 0.197 0.803 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.856 -2.421 -1.101 10.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.164 4.164 3 Si 0.730 3.270 4 H -0.176 1.176 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.430 4.430 8 H 0.121 0.879 9 C 0.096 3.904 10 N -0.167 5.167 11 C -0.080 4.080 12 C -0.279 4.279 13 N -0.119 5.119 14 C -0.188 4.188 15 C 0.040 3.960 16 C -0.097 4.097 17 C -0.107 4.107 18 C -0.302 4.302 19 S 0.306 5.694 20 C -0.250 4.250 21 N -0.168 5.168 22 C -0.045 4.045 23 C -0.076 4.076 24 H 0.092 0.908 25 H 0.150 0.850 26 H 0.148 0.852 27 H 0.150 0.850 28 H 0.142 0.858 29 H 0.214 0.786 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.413 -2.199 -1.111 10.701 hybrid contribution -0.685 0.774 0.113 1.040 sum 9.728 -1.425 -0.998 9.883 Atomic orbital electron populations 1.70071 1.07513 1.28845 1.25311 1.26238 0.95008 1.01751 0.93374 0.86217 0.81377 0.80328 0.79047 1.17626 1.19363 1.19232 1.20077 0.95568 0.89087 1.38230 0.87891 1.19195 0.89006 0.92225 0.90010 1.69576 1.07322 1.24872 1.14880 1.23584 1.00113 0.90313 0.93999 1.22561 0.90604 0.97896 1.16862 1.67663 1.08586 1.29524 1.06106 1.19916 0.91378 0.90486 1.17039 1.18100 0.91399 0.93476 0.93024 1.21029 0.93126 0.97919 0.97673 1.19854 0.93150 0.99016 0.98688 1.23706 0.95542 1.06210 1.04742 1.83643 1.03655 1.44381 1.37759 1.27884 0.96850 1.00641 0.99581 1.66164 1.00760 1.23229 1.26611 1.19065 0.94521 0.96292 0.94575 1.20917 0.88486 0.99022 0.99194 0.90843 0.85042 0.85241 0.84995 0.85808 0.78597 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.40 11.49 55.56 0.64 -16.76 16 2 C 0.06 1.55 5.50 -17.32 -0.10 1.46 16 3 Si 0.91 17.89 29.56 -169.99 -5.03 12.87 16 4 H -0.25 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.40 -10.06 7.90 -37.92 -0.30 -10.36 16 8 H 0.10 2.48 4.77 -52.49 -0.25 2.23 16 9 C 0.22 5.72 6.53 -84.55 -0.55 5.17 16 10 N -0.45 -11.79 8.05 -10.72 -0.09 -11.87 16 11 C 0.09 2.10 11.22 -17.29 -0.19 1.91 16 12 C -0.12 -2.58 11.22 -17.13 -0.19 -2.77 16 13 N -0.41 -9.62 10.32 -8.98 -0.09 -9.71 16 14 C -0.04 -1.02 6.38 -82.11 -0.52 -1.55 16 15 C 0.04 0.95 5.30 -105.08 -0.56 0.40 16 16 C -0.08 -1.40 9.62 -39.57 -0.38 -1.78 16 17 C -0.08 -1.37 9.99 -39.80 -0.40 -1.77 16 18 C -0.18 -3.13 6.57 -38.36 -0.25 -3.39 16 19 S 0.05 0.71 23.17 -107.50 -2.49 -1.78 16 20 C 0.06 0.76 12.10 51.11 0.62 1.38 16 21 N -0.46 -8.13 10.57 -13.01 -0.14 -8.26 16 22 C 0.07 1.41 6.99 -84.98 -0.59 0.82 16 23 C -0.05 -1.13 7.55 -38.47 -0.29 -1.42 16 24 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 25 H 0.13 2.54 8.06 -52.49 -0.42 2.12 16 26 H 0.13 2.42 8.06 -52.49 -0.42 1.99 16 27 H 0.13 2.32 8.06 -52.49 -0.42 1.89 16 28 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 29 H 0.20 1.79 8.06 -52.49 -0.42 1.36 16 30 H 0.15 3.17 6.71 -52.48 -0.35 2.82 16 LS Contribution 281.38 15.07 4.24 4.24 Total: -1.00 -29.32 281.38 -8.51 -37.83 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -1.85 Total: 5.35 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -3.71 Total: -11.91 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.32 Total: -46.61 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.49 Total: -1.78 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.32 -8.51 -37.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241865207.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.361 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds