Wall clock time and date at job start Tue Mar 31 2020 05:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30703 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48495 * 109.46807 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46740 * 299.99107 * 3 2 1 6 6 H 1.48496 * 109.47484 * 59.99305 * 3 2 1 7 7 C 1.40146 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99509 * 180.02562 * 7 2 1 9 9 C 1.40742 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.33977 * 120.29011 * 355.60250 * 9 7 2 11 11 C 1.31609 * 119.90005 * 180.02562 * 10 9 7 12 12 C 1.39195 * 120.51758 * 0.02562 * 11 10 9 13 13 N 1.31992 * 120.60087 * 359.97438 * 12 11 10 14 14 C 1.32908 * 120.07376 * 0.02562 * 13 12 11 15 15 C 1.47679 * 120.25957 * 180.02562 * 14 13 12 16 16 C 1.40223 * 119.86243 * 45.49118 * 15 14 13 17 17 C 1.36209 * 120.07346 * 179.73196 * 16 15 14 18 18 C 1.39615 * 120.45028 * 0.55962 * 17 16 15 19 19 S 1.76149 * 131.52555 * 179.67936 * 18 17 16 20 20 C 1.70631 * 90.86229 * 180.02562 * 19 18 17 21 21 N 1.27872 * 111.58271 * 0.02562 * 20 19 18 22 22 C 1.34744 * 117.84116 * 359.97438 * 21 20 19 23 23 C 1.38820 * 119.86745 * 225.77043 * 15 14 13 24 24 H 0.97003 * 120.00051 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.73651 * 179.72380 * 11 10 9 26 26 H 1.08001 * 119.69821 * 179.97438 * 12 11 10 27 27 H 1.07998 * 119.96626 * 359.97438 * 16 15 14 28 28 H 1.08005 * 119.77860 * 180.29758 * 17 16 15 29 29 H 1.07995 * 124.20709 * 179.97438 * 20 19 18 30 30 H 1.08005 * 119.98170 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.7010 1.3464 0.0006 5 1 1.8824 2.3963 -1.2127 6 1 1.8822 2.3966 1.2123 7 6 2.0077 -1.2137 0.0005 8 1 3.0877 -1.2137 0.0010 9 6 1.3040 -2.4326 0.0005 10 7 -0.0328 -2.4410 0.0887 11 6 -0.6831 -3.5853 0.0886 12 6 0.0072 -4.7906 -0.0021 13 7 1.3242 -4.8057 -0.0899 14 6 2.0047 -3.6640 -0.0918 15 6 3.4781 -3.6761 -0.1904 16 6 4.1080 -4.5008 -1.1334 17 6 5.4665 -4.5113 -1.2318 18 6 6.2430 -3.7128 -0.3899 19 16 7.9874 -3.5056 -0.2587 20 6 7.7842 -2.3776 1.0053 21 7 6.5485 -2.1951 1.2788 22 6 5.6374 -2.8847 0.5647 23 6 4.2341 -2.8754 0.6548 24 1 -0.4850 0.8401 -0.0004 25 1 -1.7604 -3.5892 0.1643 26 1 -0.5397 -5.7219 -0.0007 27 1 3.5153 -5.1255 -1.7852 28 1 5.9465 -5.1447 -1.9631 29 1 8.5981 -1.8803 1.5119 30 1 3.7442 -2.2451 1.3823 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241865207.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:32 Heat of formation + Delta-G solvation = 82.106074 kcal Electronic energy + Delta-G solvation = -18678.261961 eV Core-core repulsion = 15757.124829 eV Total energy + Delta-G solvation = -2921.137132 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.047 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.46524 -40.63998 -37.83704 -36.08130 -34.15649 -33.21804 -31.26737 -30.29444 -28.09400 -26.06911 -24.86861 -24.10349 -23.18199 -21.72207 -19.74737 -19.26952 -18.00119 -17.65725 -17.00975 -16.75838 -16.50548 -15.94414 -15.69054 -15.11108 -15.01147 -14.70420 -14.46591 -14.12912 -13.36405 -13.32676 -13.09749 -12.95037 -12.82221 -12.48810 -12.06975 -11.82765 -11.72784 -11.54323 -11.17795 -10.87409 -10.59596 -10.00009 -9.50967 -9.39908 -8.84182 -8.48045 -6.70260 -0.47998 -0.05676 0.37325 0.66487 0.77305 1.08046 1.32521 1.44286 1.47847 1.50119 2.10980 2.65526 2.76071 3.07431 3.66738 3.72457 3.75798 4.13739 4.19192 4.28006 4.35353 4.43991 4.54205 4.69848 4.86671 4.94883 5.05017 5.09736 5.18291 5.30395 5.63025 5.72159 5.78447 6.06337 6.39877 6.65094 6.66743 7.25162 7.83963 8.18597 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.006825 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.925838 B = 4101.645932 C = 5614.452128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.026 3.974 3 Si 0.978 3.022 4 H -0.259 1.259 5 H -0.257 1.257 6 H -0.259 1.259 7 C -0.426 4.426 8 H 0.103 0.897 9 C 0.190 3.810 10 N -0.485 5.485 11 C 0.079 3.921 12 C -0.115 4.115 13 N -0.420 5.420 14 C -0.051 4.051 15 C 0.021 3.979 16 C -0.090 4.090 17 C -0.066 4.066 18 C -0.208 4.208 19 S 0.144 5.856 20 C 0.069 3.931 21 N -0.504 5.504 22 C 0.062 3.938 23 C -0.075 4.075 24 H 0.288 0.712 25 H 0.163 0.837 26 H 0.167 0.833 27 H 0.137 0.863 28 H 0.164 0.836 29 H 0.243 0.757 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.815 -2.762 -1.778 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.183 1.183 7 C -0.456 4.456 8 H 0.121 0.879 9 C 0.066 3.934 10 N -0.202 5.202 11 C -0.091 4.091 12 C -0.277 4.277 13 N -0.133 5.133 14 C -0.197 4.197 15 C 0.017 3.983 16 C -0.112 4.112 17 C -0.088 4.088 18 C -0.327 4.327 19 S 0.396 5.604 20 C -0.235 4.235 21 N -0.218 5.218 22 C -0.056 4.056 23 C -0.098 4.098 24 H 0.099 0.901 25 H 0.180 0.820 26 H 0.184 0.816 27 H 0.154 0.846 28 H 0.181 0.819 29 H 0.259 0.741 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.374 -2.573 -1.796 13.737 hybrid contribution -1.409 0.741 0.347 1.630 sum 11.964 -1.832 -1.449 12.190 Atomic orbital electron populations 1.70126 1.08844 1.30144 1.26344 1.27054 0.95743 1.04602 0.92527 0.85197 0.79374 0.76087 0.79608 1.18293 1.18162 1.18284 1.20295 0.95792 0.89860 1.39634 0.87912 1.19598 0.89504 0.93458 0.90811 1.69517 1.07814 1.26679 1.16234 1.24125 1.01637 0.89940 0.93431 1.23168 0.90443 0.99164 1.14954 1.67757 1.09337 1.29323 1.06849 1.20305 0.93028 0.90114 1.16242 1.18126 0.90177 0.95233 0.94750 1.21064 0.94451 0.98051 0.97592 1.20204 0.92172 0.98133 0.98318 1.24175 0.98920 1.05559 1.04024 1.83372 0.98767 1.42401 1.35849 1.28793 0.96579 0.99352 0.98822 1.66217 1.02073 1.25159 1.28332 1.19118 0.94133 0.96962 0.95435 1.20675 0.89893 0.99620 0.99577 0.90061 0.81958 0.81631 0.84560 0.81852 0.74068 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.99 11.49 21.86 0.25 -37.74 16 2 C 0.03 1.27 5.50 85.32 0.47 1.74 16 3 Si 0.98 37.78 29.56 68.60 2.03 39.81 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 5 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 6 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 7 C -0.43 -22.68 7.90 23.35 0.18 -22.49 16 8 H 0.10 5.31 4.77 -2.91 -0.01 5.29 16 9 C 0.19 10.48 6.53 40.36 0.26 10.74 16 10 N -0.49 -26.50 8.05 -187.84 -1.51 -28.01 16 11 C 0.08 3.69 11.22 84.96 0.95 4.64 16 12 C -0.12 -5.10 11.22 84.90 0.95 -4.15 16 13 N -0.42 -20.35 10.32 -182.33 -1.88 -22.23 16 14 C -0.05 -2.62 6.38 42.40 0.27 -2.34 16 15 C 0.02 0.96 5.30 -20.16 -0.11 0.86 16 16 C -0.09 -3.34 9.62 22.28 0.21 -3.12 16 17 C -0.07 -2.02 9.99 22.13 0.22 -1.80 16 18 C -0.21 -6.66 6.57 23.06 0.15 -6.51 16 19 S 0.14 3.13 23.17 -56.49 -1.31 1.82 16 20 C 0.07 1.62 12.10 130.82 1.58 3.20 16 21 N -0.50 -17.37 10.57 -194.87 -2.06 -19.43 16 22 C 0.06 2.37 6.99 39.74 0.28 2.65 16 23 C -0.08 -3.33 7.55 22.99 0.17 -3.16 16 24 H 0.29 13.26 8.29 -92.71 -0.77 12.50 16 25 H 0.16 6.25 8.06 -2.91 -0.02 6.23 16 26 H 0.17 5.94 8.06 -2.91 -0.02 5.91 16 27 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 28 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 29 H 0.24 3.13 8.06 -2.91 -0.02 3.10 16 30 H 0.12 5.64 6.71 -2.91 -0.02 5.63 16 Total: -1.00 -67.71 281.38 2.33 -65.39 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.20 Total: 20.14 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 5.61 Total: -19.74 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -5.20 Total: -107.41 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.31 Total: 1.82 kcal Total: -67.71 2.33 -65.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241865207.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.494 kcal (2) G-P(sol) polarization free energy of solvation -67.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds