Wall clock time and date at job start Tue Mar 31 2020 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86805 * 119.99993 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72769 * 3 2 1 5 5 H 1.48498 * 109.47165 * 299.72714 * 3 2 1 6 6 H 1.48495 * 109.46978 * 59.72848 * 3 2 1 7 7 C 1.40125 * 120.00113 * 179.72673 * 2 1 3 8 8 H 1.08000 * 119.99551 * 179.97438 * 7 2 1 9 9 C 1.41010 * 119.99761 * 0.02562 * 7 2 1 10 10 N 1.33668 * 119.13240 * 359.72321 * 9 7 2 11 11 C 1.31565 * 120.83478 * 179.75403 * 10 9 7 12 12 C 1.40485 * 119.08731 * 0.51554 * 11 10 9 13 13 C 1.47843 * 120.79330 * 179.72019 * 12 11 10 14 14 C 1.40179 * 119.85800 * 179.74791 * 13 12 11 15 15 C 1.36230 * 120.07975 * 179.75810 * 14 13 12 16 16 C 1.39623 * 120.43889 * 0.49807 * 15 14 13 17 17 S 1.76147 * 131.52280 * 179.75659 * 16 15 14 18 18 C 1.70627 * 90.85548 * 180.02562 * 17 16 15 19 19 N 1.27877 * 111.58764 * 359.97438 * 18 17 16 20 20 C 1.34741 * 117.83597 * 0.02562 * 19 18 17 21 21 C 1.38784 * 119.86114 * 0.02562 * 13 12 11 22 22 C 1.40485 * 118.41156 * 359.74499 * 12 11 10 23 23 N 1.31561 * 119.09020 * 0.02562 * 22 12 11 24 24 H 0.97000 * 120.00425 * 0.27124 * 1 2 3 25 25 H 1.07997 * 120.46014 * 180.25483 * 11 10 9 26 26 H 1.07998 * 119.96397 * 0.02562 * 14 13 12 27 27 H 1.07994 * 119.78004 * 180.27648 * 15 14 13 28 28 H 1.08001 * 124.20762 * 180.02562 * 18 17 16 29 29 H 1.08006 * 119.97696 * 359.97438 * 21 13 12 30 30 H 1.08005 * 120.45435 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 0.0067 5 1 1.8870 2.3936 -1.2158 6 1 1.8770 2.3993 1.2091 7 6 2.0073 -1.2135 0.0058 8 1 3.0873 -1.2134 0.0054 9 6 1.3023 -2.4346 0.0111 10 7 -0.0343 -2.4144 0.0161 11 6 -0.7257 -3.5337 0.0163 12 6 -0.0401 -4.7599 0.0221 13 6 -0.7793 -6.0402 0.0287 14 6 -0.0754 -7.2525 0.0291 15 6 -0.7520 -8.4349 0.0401 16 6 -2.1481 -8.4510 0.0406 17 16 -3.3005 -9.7832 0.0476 18 6 -4.6075 -8.6864 0.0418 19 7 -4.2035 -7.4731 0.0360 20 6 -2.8742 -7.2526 0.0348 21 6 -2.1672 -6.0369 0.0286 22 6 1.3646 -4.7404 0.0221 23 7 1.9882 -3.5820 0.0171 24 1 -0.4851 0.8400 -0.0040 25 1 -1.8054 -3.5102 0.0162 26 1 1.0045 -7.2491 0.0250 27 1 -0.2048 -9.3659 0.0449 28 1 -5.6467 -8.9802 0.0437 29 1 -2.7046 -5.1000 0.0241 30 1 1.9249 -5.6637 0.0260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241866586.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:46 Heat of formation + Delta-G solvation = 100.194168 kcal Electronic energy + Delta-G solvation = -17972.943683 eV Core-core repulsion = 15052.590909 eV Total energy + Delta-G solvation = -2920.352774 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.047 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.12090 -38.99903 -36.68129 -34.09093 -32.26678 -31.75916 -30.15053 -28.90187 -26.27431 -24.86601 -23.41927 -22.71541 -21.40137 -20.36689 -18.29331 -18.13251 -16.34790 -16.25189 -15.80053 -15.11308 -14.87464 -14.54429 -14.45120 -13.54565 -13.39417 -13.20388 -12.87255 -12.70458 -12.39840 -11.78847 -11.64837 -11.41836 -11.34357 -10.98691 -10.70996 -10.41424 -10.12229 -9.65283 -9.55710 -9.35041 -9.34176 -8.84471 -8.17354 -7.52047 -7.38862 -6.79230 -4.92810 0.62664 1.22503 1.42845 1.85632 2.35255 2.70916 2.85198 2.92642 2.99036 3.00188 3.69478 4.05729 4.14495 4.50310 4.83391 5.18005 5.24307 5.44964 5.56923 5.64060 5.73059 5.77303 5.88376 6.10554 6.15357 6.38273 6.47364 6.54504 6.73875 6.88986 7.00504 7.24359 7.44071 7.74250 7.90898 8.23002 8.31148 8.88227 9.84608 10.03951 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.046079 B = 0.003439 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.502103 B = 8139.434025 C = 8737.089667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.690 5.690 2 C 0.057 3.943 3 Si 0.924 3.076 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.367 4.367 8 H 0.099 0.901 9 C 0.376 3.624 10 N -0.508 5.508 11 C 0.187 3.813 12 C -0.337 4.337 13 C 0.055 3.945 14 C -0.114 4.114 15 C -0.065 4.065 16 C -0.206 4.206 17 S 0.058 5.942 18 C 0.061 3.939 19 N -0.463 5.463 20 C 0.091 3.909 21 C -0.102 4.102 22 C 0.193 3.807 23 N -0.591 5.591 24 H 0.281 0.719 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.124 0.876 28 H 0.198 0.802 29 H 0.132 0.868 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.617 -11.826 0.042 12.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.310 5.310 2 C -0.172 4.172 3 Si 0.746 3.254 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.399 4.399 8 H 0.117 0.883 9 C 0.145 3.855 10 N -0.223 5.223 11 C 0.009 3.991 12 C -0.348 4.348 13 C 0.050 3.950 14 C -0.135 4.135 15 C -0.088 4.088 16 C -0.324 4.324 17 S 0.309 5.691 18 C -0.245 4.245 19 N -0.176 5.176 20 C -0.027 4.027 21 C -0.124 4.124 22 C 0.017 3.983 23 N -0.309 5.309 24 H 0.092 0.908 25 H 0.151 0.849 26 H 0.150 0.850 27 H 0.142 0.858 28 H 0.214 0.786 29 H 0.150 0.850 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.629 -11.225 0.051 12.142 hybrid contribution -0.073 0.470 -0.005 0.475 sum -4.703 -10.755 0.046 11.738 Atomic orbital electron populations 1.70125 1.07543 1.28911 1.24372 1.26279 0.95183 1.01957 0.93788 0.85988 0.80847 0.79571 0.78952 1.17856 1.19363 1.19365 1.19616 0.95298 0.87857 1.37128 0.88283 1.19973 0.86021 0.90904 0.88622 1.69367 1.08032 1.26734 1.18176 1.23108 0.99185 0.87848 0.88977 1.19638 0.95238 0.92724 1.27168 1.18487 0.91418 0.92688 0.92367 1.20953 1.00177 0.91114 1.01259 1.19865 0.90064 0.98550 1.00274 1.23616 0.99007 0.95167 1.14600 1.83682 0.98606 1.11080 1.75735 1.27922 1.04149 0.90557 1.01839 1.66203 1.14984 1.21393 1.15014 1.19070 0.86427 0.93968 1.03247 1.20592 0.92754 0.95098 1.03921 1.22694 0.90322 0.95929 0.89345 1.68663 1.40695 0.98438 1.23148 0.90762 0.84938 0.84951 0.85843 0.78570 0.84982 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.10 11.40 55.56 0.63 -16.46 16 2 C 0.06 1.36 5.50 -17.34 -0.10 1.26 16 3 Si 0.92 17.24 29.56 -169.99 -5.02 12.21 16 4 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.51 16 6 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.37 -9.45 9.35 -37.82 -0.35 -9.80 16 8 H 0.10 2.43 7.85 -52.49 -0.41 2.02 16 9 C 0.38 10.11 7.35 -158.15 -1.16 8.95 16 10 N -0.51 -13.44 7.82 -12.41 -0.10 -13.54 16 11 C 0.19 4.32 10.69 -16.82 -0.18 4.14 16 12 C -0.34 -7.13 5.94 -104.27 -0.62 -7.75 16 13 C 0.06 1.00 5.86 -105.04 -0.62 0.38 16 14 C -0.11 -1.75 9.39 -39.58 -0.37 -2.12 16 15 C -0.06 -0.92 10.00 -39.79 -0.40 -1.32 16 16 C -0.21 -3.13 6.57 -38.36 -0.25 -3.38 16 17 S 0.06 0.68 23.17 -107.50 -2.49 -1.81 16 18 C 0.06 0.74 12.10 51.12 0.62 1.35 16 19 N -0.46 -7.42 10.57 -13.00 -0.14 -7.55 16 20 C 0.09 1.55 6.99 -84.98 -0.59 0.96 16 21 C -0.10 -1.83 9.52 -38.47 -0.37 -2.19 16 22 C 0.19 4.17 10.69 -16.82 -0.18 3.99 16 23 N -0.59 -14.87 10.34 -12.41 -0.13 -15.00 16 24 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 25 H 0.13 2.74 6.30 -52.49 -0.33 2.41 16 26 H 0.13 1.77 6.26 -52.49 -0.33 1.44 16 27 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.20 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.13 2.34 6.23 -52.48 -0.33 2.01 16 30 H 0.13 2.35 6.31 -52.48 -0.33 2.02 16 LS Contribution 281.44 15.07 4.24 4.24 Total: -1.00 -29.69 281.44 -9.28 -38.97 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -1.71 Total: 4.48 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -4.57 Total: -5.52 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.27 Total: -52.56 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.02 Total: 12.21 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.49 Total: -1.81 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.69 -9.28 -38.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241866586.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.161 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds