Wall clock time and date at job start Tue Mar 31 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86807 * 119.99924 * 2 1 4 4 H 1.48494 * 109.47173 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47206 * 120.00056 * 3 2 1 6 6 H 1.48501 * 109.46870 * 239.99812 * 3 2 1 7 7 C 1.40046 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99862 * 173.67638 * 7 2 1 9 9 C 1.41317 * 119.99952 * 353.66860 * 7 2 1 10 10 C 1.40845 * 120.14718 * 186.21526 * 9 7 2 11 11 N 1.31873 * 119.97110 * 179.97438 * 10 9 7 12 12 C 1.32194 * 120.28474 * 0.02562 * 11 10 9 13 13 C 1.40027 * 120.29770 * 359.97438 * 12 11 10 14 14 C 1.48243 * 119.99009 * 180.02562 * 13 12 11 15 15 C 1.39929 * 119.83425 * 180.02562 * 14 13 12 16 16 C 1.36328 * 120.09295 * 179.97438 * 15 14 13 17 17 C 1.39494 * 120.41530 * 0.02562 * 16 15 14 18 18 S 1.76140 * 131.54592 * 179.97438 * 17 16 15 19 19 C 1.70635 * 90.84699 * 180.02562 * 18 17 16 20 20 N 1.27885 * 111.56213 * 359.97438 * 19 18 17 21 21 C 1.34709 * 117.83673 * 0.02562 * 20 19 18 22 22 C 1.38448 * 119.83093 * 359.73336 * 14 13 12 23 23 N 1.32569 * 120.02419 * 359.79108 * 13 12 11 24 24 H 0.96999 * 119.99707 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.01638 * 359.96317 * 10 9 7 26 26 H 1.08004 * 119.84657 * 180.02562 * 12 11 10 27 27 H 1.07996 * 119.95149 * 359.97438 * 15 14 13 28 28 H 1.08005 * 119.79239 * 179.97438 * 16 15 14 29 29 H 1.08000 * 124.21389 * 180.02562 * 19 18 17 30 30 H 1.08009 * 119.96445 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2764 2.7465 -0.0006 5 1 3.0951 1.6965 1.2125 6 1 3.0951 1.6964 -1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0826 -1.2156 -0.1025 9 6 1.3075 -2.4329 0.1361 10 6 2.0151 -3.6435 0.2684 11 7 1.3583 -4.7799 0.3952 12 6 0.0364 -4.7892 0.3982 13 6 -0.6788 -3.5924 0.2673 14 6 -2.1611 -3.6106 0.2721 15 6 -2.8724 -2.4128 0.1406 16 6 -4.2356 -2.4235 0.1438 17 6 -4.9321 -3.6247 0.2783 18 16 -6.6576 -3.9761 0.3204 19 6 -6.3395 -5.6423 0.5054 20 7 -5.0833 -5.8811 0.5292 21 6 -4.2419 -4.8357 0.4114 22 6 -2.8346 -4.8134 0.4006 23 7 -0.0307 -2.4426 0.1438 24 1 -0.4850 0.8401 -0.0004 25 1 3.0951 -3.6411 0.2660 26 1 -0.4944 -5.7240 0.5028 27 1 -2.3407 -1.4786 0.0364 28 1 -4.7798 -1.4961 0.0423 29 1 -7.1037 -6.4006 0.5908 30 1 -2.2796 -5.7350 0.4965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241867712.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:36 Heat of formation + Delta-G solvation = 97.523038 kcal Electronic energy + Delta-G solvation = -18309.969712 eV Core-core repulsion = 15389.501109 eV Total energy + Delta-G solvation = -2920.468603 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.047 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.18055 -39.00883 -36.63140 -34.18210 -32.53821 -31.47405 -30.03742 -28.80860 -26.21516 -24.81370 -23.55357 -22.73258 -21.41784 -20.29498 -18.28367 -17.72294 -16.42304 -15.92595 -15.68801 -15.21444 -14.86060 -14.72707 -14.59557 -13.65141 -13.52488 -13.22300 -13.21015 -12.43522 -11.71759 -11.69588 -11.66678 -11.41866 -11.34371 -10.83504 -10.73314 -10.45317 -10.13347 -9.91311 -9.66408 -9.58707 -9.28906 -8.53098 -8.07798 -7.59702 -7.46877 -6.67078 -4.81864 0.63903 1.12422 1.37791 1.81536 2.39159 2.65597 2.92323 2.95708 2.97269 3.09250 3.75538 4.04872 4.07408 4.57779 4.81902 5.02249 5.35247 5.48124 5.54401 5.64923 5.76640 5.85992 6.02613 6.18535 6.35121 6.39043 6.55038 6.77491 6.84109 6.95019 7.08183 7.10956 7.50119 7.69468 7.90751 8.27018 8.51803 9.09134 9.64398 9.99831 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.004647 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.000681 B = 6023.436061 C = 7185.671577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.068 3.932 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.411 4.411 8 H 0.092 0.908 9 C 0.208 3.792 10 C -0.055 4.055 11 N -0.429 5.429 12 C -0.103 4.103 13 C 0.132 3.868 14 C 0.002 3.998 15 C -0.051 4.051 16 C -0.090 4.090 17 C -0.172 4.172 18 S 0.067 5.933 19 C 0.055 3.945 20 N -0.458 5.458 21 C 0.066 3.934 22 C -0.055 4.055 23 N -0.440 5.440 24 H 0.278 0.722 25 H 0.136 0.864 26 H 0.130 0.870 27 H 0.164 0.836 28 H 0.128 0.872 29 H 0.199 0.801 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.789 -1.229 0.199 10.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.158 4.158 3 Si 0.738 3.262 4 H -0.200 1.200 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.442 4.442 8 H 0.110 0.890 9 C 0.081 3.919 10 C -0.226 4.226 11 N -0.140 5.140 12 C -0.262 4.262 13 C -0.015 4.015 14 C -0.003 4.003 15 C -0.073 4.073 16 C -0.113 4.113 17 C -0.291 4.291 18 S 0.319 5.681 19 C -0.251 4.251 20 N -0.170 5.170 21 C -0.052 4.052 22 C -0.077 4.077 23 N -0.158 5.158 24 H 0.090 0.910 25 H 0.153 0.847 26 H 0.148 0.852 27 H 0.182 0.818 28 H 0.146 0.854 29 H 0.216 0.784 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.755 -1.141 0.207 11.812 hybrid contribution 1.124 0.546 0.033 1.250 sum -10.631 -0.595 0.239 10.651 Atomic orbital electron populations 1.70006 1.07493 1.28626 1.27298 1.26112 0.94998 1.01471 0.93262 0.86251 0.80085 0.79677 0.80163 1.20024 1.18682 1.18696 1.19620 0.95095 0.89133 1.40385 0.88980 1.19343 0.88596 0.93492 0.90446 1.23277 0.99441 0.89321 1.10524 1.67702 1.08709 1.30009 1.07587 1.22553 0.90727 0.97040 1.15856 1.20485 0.91908 0.92015 0.97107 1.18529 0.92014 0.92187 0.97525 1.21479 0.92341 1.00188 0.93316 1.20045 0.94129 0.94926 1.02204 1.23828 0.95672 0.99187 1.10399 1.83773 1.04195 1.05742 1.74387 1.27909 0.95841 0.98909 1.02428 1.66155 1.02471 1.33485 1.14864 1.18989 0.94660 0.86070 1.05493 1.20717 0.89512 0.98629 0.98890 1.69490 1.08205 1.22922 1.15159 0.91050 0.84652 0.85245 0.81811 0.85404 0.78430 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -16.95 11.51 55.55 0.64 -16.31 16 2 C 0.07 1.57 5.49 -17.34 -0.10 1.47 16 3 Si 0.91 16.98 29.56 -169.99 -5.03 11.95 16 4 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 7 C -0.41 -10.04 9.15 -37.73 -0.35 -10.39 16 8 H 0.09 2.06 7.85 -52.49 -0.41 1.65 16 9 C 0.21 5.36 6.54 -84.84 -0.56 4.80 16 10 C -0.06 -1.34 10.98 -16.55 -0.18 -1.52 16 11 N -0.43 -10.44 10.47 -12.05 -0.13 -10.57 16 12 C -0.10 -2.39 10.61 -16.73 -0.18 -2.56 16 13 C 0.13 3.09 6.73 -82.77 -0.56 2.53 16 14 C 0.00 0.03 5.86 -105.07 -0.62 -0.58 16 15 C -0.05 -0.97 9.51 -39.64 -0.38 -1.35 16 16 C -0.09 -1.45 10.00 -39.80 -0.40 -1.85 16 17 C -0.17 -2.75 6.56 -38.44 -0.25 -3.00 16 18 S 0.07 0.81 23.17 -107.50 -2.49 -1.68 16 19 C 0.05 0.66 12.10 51.12 0.62 1.28 16 20 N -0.46 -7.24 10.57 -13.00 -0.14 -7.38 16 21 C 0.07 1.14 6.99 -84.98 -0.59 0.55 16 22 C -0.06 -1.01 9.49 -38.55 -0.37 -1.38 16 23 N -0.44 -11.28 7.14 -7.51 -0.05 -11.33 16 24 H 0.28 5.95 8.29 -40.82 -0.34 5.61 16 25 H 0.14 2.95 8.06 -52.49 -0.42 2.53 16 26 H 0.13 2.63 6.15 -52.48 -0.32 2.31 16 27 H 0.16 3.35 7.53 -52.49 -0.40 2.96 16 28 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 29 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.14 2.40 6.13 -52.48 -0.32 2.08 16 LS Contribution 283.87 15.07 4.28 4.28 Total: -1.00 -28.36 283.87 -8.67 -37.02 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -1.85 Total: 6.02 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -3.90 Total: -12.00 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.32 Total: -45.59 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.49 Total: -1.68 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.36 -8.67 -37.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241867712.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.548 kcal (2) G-P(sol) polarization free energy of solvation -28.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds