Wall clock time and date at job start Tue Mar 31 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86807 * 119.99924 * 2 1 4 4 H 1.48494 * 109.47173 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47206 * 120.00056 * 3 2 1 6 6 H 1.48501 * 109.46870 * 239.99812 * 3 2 1 7 7 C 1.40046 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99862 * 173.67638 * 7 2 1 9 9 C 1.41317 * 119.99952 * 353.66860 * 7 2 1 10 10 C 1.40845 * 120.14718 * 186.21526 * 9 7 2 11 11 N 1.31873 * 119.97110 * 179.97438 * 10 9 7 12 12 C 1.32194 * 120.28474 * 0.02562 * 11 10 9 13 13 C 1.40027 * 120.29770 * 359.97438 * 12 11 10 14 14 C 1.48243 * 119.99009 * 180.02562 * 13 12 11 15 15 C 1.39929 * 119.83425 * 180.02562 * 14 13 12 16 16 C 1.36328 * 120.09295 * 179.97438 * 15 14 13 17 17 C 1.39494 * 120.41530 * 0.02562 * 16 15 14 18 18 S 1.76140 * 131.54592 * 179.97438 * 17 16 15 19 19 C 1.70635 * 90.84699 * 180.02562 * 18 17 16 20 20 N 1.27885 * 111.56213 * 359.97438 * 19 18 17 21 21 C 1.34709 * 117.83673 * 0.02562 * 20 19 18 22 22 C 1.38448 * 119.83093 * 359.73336 * 14 13 12 23 23 N 1.32569 * 120.02419 * 359.79108 * 13 12 11 24 24 H 0.96999 * 119.99707 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.01638 * 359.96317 * 10 9 7 26 26 H 1.08004 * 119.84657 * 180.02562 * 12 11 10 27 27 H 1.07996 * 119.95149 * 359.97438 * 15 14 13 28 28 H 1.08005 * 119.79239 * 179.97438 * 16 15 14 29 29 H 1.08000 * 124.21389 * 180.02562 * 19 18 17 30 30 H 1.08009 * 119.96445 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2764 2.7465 -0.0006 5 1 3.0951 1.6965 1.2125 6 1 3.0951 1.6964 -1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0826 -1.2156 -0.1025 9 6 1.3075 -2.4329 0.1361 10 6 2.0151 -3.6435 0.2684 11 7 1.3583 -4.7799 0.3952 12 6 0.0364 -4.7892 0.3982 13 6 -0.6788 -3.5924 0.2673 14 6 -2.1611 -3.6106 0.2721 15 6 -2.8724 -2.4128 0.1406 16 6 -4.2356 -2.4235 0.1438 17 6 -4.9321 -3.6247 0.2783 18 16 -6.6576 -3.9761 0.3204 19 6 -6.3395 -5.6423 0.5054 20 7 -5.0833 -5.8811 0.5292 21 6 -4.2419 -4.8357 0.4114 22 6 -2.8346 -4.8134 0.4006 23 7 -0.0307 -2.4426 0.1438 24 1 -0.4850 0.8401 -0.0004 25 1 3.0951 -3.6411 0.2660 26 1 -0.4944 -5.7240 0.5028 27 1 -2.3407 -1.4786 0.0364 28 1 -4.7798 -1.4961 0.0423 29 1 -7.1037 -6.4006 0.5908 30 1 -2.2796 -5.7350 0.4965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241867712.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:36 Heat of formation + Delta-G solvation = 80.523139 kcal Electronic energy + Delta-G solvation = -18310.706883 eV Core-core repulsion = 15389.501109 eV Total energy + Delta-G solvation = -2921.205774 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.047 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.51724 -40.69439 -37.95217 -35.96874 -34.22416 -33.12697 -31.46925 -30.30371 -27.98389 -26.08917 -25.02690 -24.39085 -22.97468 -21.72190 -19.52964 -19.44165 -17.89772 -17.46685 -17.26995 -16.80123 -16.39163 -16.15161 -15.81551 -15.03803 -15.01920 -14.85079 -14.54430 -13.83037 -13.37515 -13.27968 -13.10655 -12.93951 -12.85526 -12.49720 -12.07365 -11.92817 -11.74877 -11.52526 -11.42551 -10.81804 -10.66258 -10.08365 -9.46679 -9.41495 -8.88837 -8.42576 -6.68173 -0.56470 -0.32659 0.28945 0.72845 0.77004 1.07005 1.43208 1.46012 1.54906 1.57444 2.19616 2.58420 2.87208 2.93290 3.56035 3.61717 3.79354 3.99647 4.12339 4.22747 4.27693 4.41310 4.46530 4.58530 4.87077 4.91468 5.04246 5.12709 5.15922 5.26897 5.58161 5.64460 5.74180 6.09599 6.44771 6.58007 6.68362 7.23936 7.80656 8.28957 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.004647 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.000681 B = 6023.436061 C = 7185.671577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.025 3.975 3 Si 0.993 3.007 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.257 1.257 7 C -0.433 4.433 8 H 0.105 0.895 9 C 0.176 3.824 10 C -0.078 4.078 11 N -0.438 5.438 12 C -0.119 4.119 13 C 0.126 3.874 14 C -0.023 4.023 15 C -0.073 4.073 16 C -0.075 4.075 17 C -0.196 4.196 18 S 0.145 5.855 19 C 0.072 3.928 20 N -0.496 5.496 21 C 0.059 3.941 22 C -0.060 4.060 23 N -0.464 5.464 24 H 0.287 0.713 25 H 0.153 0.847 26 H 0.152 0.848 27 H 0.142 0.858 28 H 0.156 0.844 29 H 0.247 0.753 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 -0.724 0.241 13.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.199 4.199 3 Si 0.813 3.187 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.181 1.181 7 C -0.464 4.464 8 H 0.123 0.877 9 C 0.050 3.950 10 C -0.247 4.247 11 N -0.150 5.150 12 C -0.278 4.278 13 C -0.021 4.021 14 C -0.027 4.027 15 C -0.095 4.095 16 C -0.098 4.098 17 C -0.315 4.315 18 S 0.399 5.601 19 C -0.232 4.232 20 N -0.209 5.209 21 C -0.060 4.060 22 C -0.082 4.082 23 N -0.182 5.182 24 H 0.098 0.902 25 H 0.170 0.830 26 H 0.169 0.831 27 H 0.159 0.841 28 H 0.174 0.826 29 H 0.263 0.737 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.417 -0.649 0.246 14.434 hybrid contribution 1.624 0.300 0.023 1.651 sum -12.793 -0.349 0.270 12.801 Atomic orbital electron populations 1.70092 1.08994 1.30128 1.26765 1.27048 0.95826 1.04648 0.92387 0.85074 0.78610 0.74814 0.80201 1.19110 1.18360 1.18073 1.20068 0.95966 0.89726 1.40678 0.87740 1.19820 0.89260 0.94612 0.91302 1.23505 1.00281 0.89195 1.11741 1.67699 1.09379 1.30100 1.07796 1.22936 0.90618 0.98075 1.16123 1.21002 0.93777 0.91608 0.95683 1.18440 0.90402 0.93641 1.00220 1.21267 0.93695 0.98806 0.95745 1.20211 0.93030 0.96356 1.00174 1.24223 0.98954 0.98566 1.09763 1.83590 0.99524 1.04567 1.72461 1.28849 0.95554 1.00516 0.98321 1.66229 1.03727 1.33221 1.17769 1.19101 0.94511 0.87358 1.05018 1.20676 0.90614 0.97841 0.99057 1.69509 1.08331 1.24025 1.16373 0.90188 0.83017 0.83056 0.84073 0.82603 0.73731 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.08 11.51 21.84 0.25 -35.83 16 2 C 0.03 1.17 5.49 85.29 0.47 1.64 16 3 Si 0.99 34.66 29.56 68.60 2.03 36.69 16 4 H -0.27 -8.84 7.11 99.48 0.71 -8.14 16 5 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 6 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 7 C -0.43 -21.84 9.15 23.47 0.21 -21.63 16 8 H 0.10 4.78 7.85 -2.91 -0.02 4.76 16 9 C 0.18 9.52 6.54 40.23 0.26 9.78 16 10 C -0.08 -3.95 10.98 85.32 0.94 -3.01 16 11 N -0.44 -22.20 10.47 -192.03 -2.01 -24.21 16 12 C -0.12 -5.75 10.61 85.07 0.90 -4.85 16 13 C 0.13 6.25 6.73 42.13 0.28 6.54 16 14 C -0.02 -0.97 5.86 -20.16 -0.12 -1.08 16 15 C -0.07 -2.86 9.51 22.23 0.21 -2.65 16 16 C -0.08 -2.36 10.00 22.13 0.22 -2.14 16 17 C -0.20 -5.86 6.56 23.01 0.15 -5.71 16 18 S 0.15 2.86 23.17 -56.49 -1.31 1.55 16 19 C 0.07 1.41 12.10 130.82 1.58 2.99 16 20 N -0.50 -14.48 10.57 -194.86 -2.06 -16.54 16 21 C 0.06 1.98 6.99 39.75 0.28 2.25 16 22 C -0.06 -2.24 9.49 22.93 0.22 -2.03 16 23 N -0.46 -25.08 7.14 -177.68 -1.27 -26.35 16 24 H 0.29 12.49 8.29 -92.71 -0.77 11.72 16 25 H 0.15 6.89 8.06 -2.91 -0.02 6.87 16 26 H 0.15 6.39 6.15 -2.91 -0.02 6.37 16 27 H 0.14 6.14 7.53 -2.91 -0.02 6.11 16 28 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 29 H 0.25 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.14 4.99 6.13 -2.91 -0.02 4.97 16 Total: -1.00 -64.42 283.87 2.45 -61.98 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 1.20 Total: 22.60 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 5.61 Total: -19.90 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -5.09 Total: -102.93 kcal Atomic # 14 Polarization: 34.66 SS G_CDS: 2.03 Total: 36.69 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.31 Total: 1.55 kcal Total: -64.42 2.45 -61.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241867712.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.502 kcal (2) G-P(sol) polarization free energy of solvation -64.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds