Wall clock time and date at job start Tue Mar 31 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39097 * 120.56373 * 39.30203 * 3 2 1 5 5 C 1.39376 * 119.80272 * 180.28102 * 4 3 2 6 6 C 1.48021 * 119.49678 * 179.73039 * 5 4 3 7 7 C 1.39602 * 120.13849 * 359.73985 * 6 5 4 8 8 C 1.37932 * 119.88453 * 179.76758 * 7 6 5 9 9 C 1.38387 * 120.15160 * 0.49345 * 8 7 6 10 10 C 1.38477 * 120.27578 * 359.78314 * 9 8 7 11 11 Cl 1.73602 * 119.93985 * 179.97438 * 10 9 8 12 12 C 1.38079 * 120.11872 * 359.95896 * 10 9 8 13 13 C 1.39972 * 121.00344 * 359.74677 * 5 4 3 14 14 C 1.36018 * 121.19072 * 359.95977 * 13 5 4 15 15 C 1.41035 * 120.10902 * 0.04230 * 14 13 5 16 16 C 1.40458 * 120.48930 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00139 * 208.74880 * 16 15 14 18 18 C 1.40302 * 119.99725 * 28.74302 * 16 15 14 19 19 N 1.30635 * 119.99879 * 197.54028 * 18 16 15 20 20 Si 1.86800 * 120.00516 * 17.54807 * 18 16 15 21 21 H 1.48496 * 109.47038 * 269.99882 * 20 18 16 22 22 H 1.48508 * 109.46935 * 29.99300 * 20 18 16 23 23 H 1.48498 * 109.47317 * 149.99321 * 20 18 16 24 24 H 1.07994 * 120.10367 * 359.97438 * 4 3 2 25 25 H 1.08003 * 120.06024 * 0.02562 * 7 6 5 26 26 H 1.08000 * 119.92510 * 180.25088 * 8 7 6 27 27 H 1.08007 * 119.85947 * 179.76281 * 9 8 7 28 28 H 1.07998 * 120.08032 * 180.02562 * 12 10 9 29 29 H 1.07998 * 119.40494 * 179.97438 * 13 5 4 30 30 H 1.08001 * 119.94472 * 180.02562 * 14 13 5 31 31 H 0.97001 * 119.99807 * 355.46082 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2757 -0.9259 -0.7586 5 6 4.6693 -0.9147 -0.7423 6 6 5.4156 -1.9075 -1.5475 7 6 4.7264 -2.8504 -2.3123 8 6 5.4271 -3.7701 -3.0644 9 6 6.8109 -3.7665 -3.0544 10 6 7.5011 -2.8379 -2.2936 11 17 9.2371 -2.8417 -2.2869 12 6 6.8111 -1.9086 -1.5406 13 6 5.3739 0.0209 0.0241 14 6 4.7231 0.9488 0.7762 15 6 3.3133 0.9814 0.7956 16 6 2.6330 1.9357 1.5698 17 1 1.6523 1.7124 1.9631 18 6 3.2277 3.1790 1.8323 19 7 2.7797 3.9246 2.8069 20 14 4.6601 3.7685 0.7881 21 1 5.9359 3.3097 1.3938 22 1 4.5349 3.2121 -0.5832 23 1 4.6480 5.2520 0.7234 24 1 2.7470 -1.6549 -1.3547 25 1 3.6464 -2.8570 -2.3183 26 1 4.8945 -4.4972 -3.6595 27 1 7.3548 -4.4913 -3.6421 28 1 7.3500 -1.1844 -0.9478 29 1 6.4538 0.0060 0.0181 30 1 5.2869 1.6615 1.3598 31 1 1.9951 3.6496 3.3066 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242146657.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:24 Heat of formation + Delta-G solvation = 47.180851 kcal Electronic energy + Delta-G solvation = -17962.984543 eV Core-core repulsion = 15005.996482 eV Total energy + Delta-G solvation = -2956.988061 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.34046 -37.83841 -36.33600 -35.38287 -34.43540 -32.07359 -31.04671 -30.05510 -29.21668 -25.52066 -23.42520 -22.33754 -21.46897 -20.89083 -18.64251 -17.90387 -16.60863 -15.43118 -15.29441 -14.95596 -14.46560 -14.23209 -13.64198 -13.55957 -13.44724 -13.18341 -12.79709 -12.68072 -12.20073 -11.96007 -11.80219 -11.45328 -11.38609 -11.26630 -11.15029 -10.85179 -10.67549 -10.43922 -10.21904 -9.83288 -9.51539 -8.99054 -8.62466 -8.15363 -7.97139 -7.49293 -5.05072 1.17011 1.42383 1.86226 2.23888 2.44017 2.93559 3.09933 3.28234 3.62535 3.65157 3.70587 4.11970 4.30134 4.92171 4.99611 5.06266 5.12279 5.26054 5.45388 5.56808 5.60881 5.76393 5.91473 6.15467 6.24205 6.37430 6.39717 6.52865 6.60030 6.82306 6.91680 6.97754 7.15912 7.21924 7.37448 7.45026 7.82266 7.92622 8.15867 8.54126 9.41979 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.019157 B = 0.004864 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.231246 B = 5754.890772 C = 7043.742536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.295 3.705 3 C -0.175 4.175 4 C 0.014 3.986 5 C -0.215 4.215 6 C 0.034 3.966 7 C -0.141 4.141 8 C -0.096 4.096 9 C -0.150 4.150 10 C -0.019 4.019 11 Cl -0.087 7.087 12 C -0.136 4.136 13 C -0.024 4.024 14 C -0.241 4.241 15 C 0.132 3.868 16 C -0.456 4.456 17 H 0.087 0.913 18 C 0.038 3.962 19 N -0.769 5.769 20 Si 1.072 2.928 21 H -0.267 1.267 22 H -0.253 1.253 23 H -0.282 1.282 24 H 0.109 0.891 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.738 -8.007 -7.294 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.015 4.015 3 C -0.180 4.180 4 C -0.007 4.007 5 C -0.216 4.216 6 C 0.033 3.967 7 C -0.159 4.159 8 C -0.114 4.114 9 C -0.169 4.169 10 C -0.045 4.045 11 Cl -0.058 7.058 12 C -0.155 4.155 13 C -0.042 4.042 14 C -0.260 4.260 15 C 0.126 3.874 16 C -0.482 4.482 17 H 0.105 0.895 18 C -0.187 4.187 19 N -0.387 5.387 20 Si 0.895 3.105 21 H -0.193 1.193 22 H -0.177 1.177 23 H -0.209 1.209 24 H 0.127 0.873 25 H 0.144 0.856 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.150 0.850 29 H 0.124 0.876 30 H 0.135 0.865 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.106 -6.720 -7.334 13.486 hybrid contribution -0.677 -1.265 0.467 1.509 sum 8.429 -7.985 -6.867 13.490 Atomic orbital electron populations 1.81057 1.12585 1.11519 1.12182 1.25661 0.92608 0.91555 0.91699 1.16732 0.83430 1.07566 1.10314 1.20714 0.92777 0.93834 0.93350 1.17671 0.91817 1.02949 1.09188 1.18785 0.91544 0.93115 0.93233 1.21315 1.00244 0.96063 0.98311 1.20925 0.93185 0.98582 0.98754 1.20851 0.94341 0.99931 1.01745 1.20771 0.83480 0.99151 1.01135 1.98343 1.11371 1.98234 1.97846 1.21083 0.93724 0.99585 1.01067 1.20480 0.98247 0.92791 0.92731 1.20761 0.93735 1.04150 1.07339 1.18569 0.91254 0.90058 0.87528 1.21036 1.04536 0.99027 1.23628 0.89508 1.27785 1.02651 0.93297 0.94953 1.70445 1.18497 1.39610 1.10142 0.83619 0.73546 0.76084 0.77243 1.19350 1.17706 1.20920 0.87270 0.85605 0.85776 0.85889 0.85010 0.87604 0.86506 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.40 18.54 41.84 0.78 -10.62 16 2 C 0.30 6.52 14.34 -22.47 -0.32 6.20 16 3 C -0.17 -3.68 5.93 -104.27 -0.62 -4.30 16 4 C 0.01 0.26 9.12 -38.84 -0.35 -0.10 16 5 C -0.21 -3.79 5.88 -104.81 -0.62 -4.41 16 6 C 0.03 0.53 5.88 -104.89 -0.62 -0.09 16 7 C -0.14 -1.95 9.41 -39.18 -0.37 -2.32 16 8 C -0.10 -1.16 10.03 -39.64 -0.40 -1.55 16 9 C -0.15 -1.84 9.82 -39.44 -0.39 -2.22 16 10 C -0.02 -0.26 6.31 -39.55 -0.25 -0.50 16 11 Cl -0.09 -1.06 28.95 -51.86 -1.50 -2.56 16 12 C -0.14 -1.98 9.20 -39.15 -0.36 -2.34 16 13 C -0.02 -0.43 9.30 -39.73 -0.37 -0.80 16 14 C -0.24 -4.83 7.21 -39.32 -0.28 -5.11 16 15 C 0.13 2.91 5.30 -104.61 -0.55 2.36 16 16 C -0.46 -10.77 8.90 -37.97 -0.34 -11.11 16 17 H 0.09 2.20 7.61 -52.49 -0.40 1.80 16 18 C 0.04 0.88 5.42 -17.28 -0.09 0.78 16 19 N -0.77 -18.06 13.64 55.57 0.76 -17.30 16 20 Si 1.07 20.67 24.90 -169.99 -4.23 16.44 16 21 H -0.27 -4.74 6.44 56.52 0.36 -4.38 16 22 H -0.25 -4.82 7.02 56.52 0.40 -4.43 16 23 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 24 H 0.11 1.73 6.13 -52.49 -0.32 1.41 16 25 H 0.13 1.59 6.15 -52.48 -0.32 1.27 16 26 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 28 H 0.13 1.81 6.13 -52.49 -0.32 1.49 16 29 H 0.11 1.62 6.09 -52.49 -0.32 1.30 16 30 H 0.12 2.26 4.39 -52.49 -0.23 2.03 16 31 H 0.30 6.79 8.72 -40.82 -0.36 6.44 16 LS Contribution 290.01 15.07 4.37 4.37 Total: -1.00 -23.94 290.01 -7.72 -31.66 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -1.96 Total: 3.54 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -5.93 Total: -25.52 kcal Atomic # 7 Polarization: -29.46 SS G_CDS: 1.53 Total: -27.93 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.23 Total: 16.44 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -23.94 -7.72 -31.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242146657.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.838 kcal (2) G-P(sol) polarization free energy of solvation -23.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds