Wall clock time and date at job start Tue Mar 31 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86804 * 119.99928 * 2 1 4 4 H 1.48501 * 109.46917 * 269.99952 * 3 2 1 5 5 H 1.48496 * 109.46931 * 30.00173 * 3 2 1 6 6 H 1.48497 * 109.46876 * 149.99961 * 3 2 1 7 7 C 1.39956 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99752 * 197.65574 * 7 2 1 9 9 C 1.41063 * 120.00027 * 17.64835 * 7 2 1 10 10 C 1.41327 * 120.54939 * 23.72416 * 9 7 2 11 11 C 1.36539 * 118.42802 * 179.97438 * 10 9 7 12 12 C 1.39966 * 119.46560 * 0.24701 * 11 10 9 13 13 C 1.47904 * 119.45925 * 179.74911 * 12 11 10 14 14 C 1.41134 * 126.37553 * 5.02784 * 13 12 11 15 15 N 1.30525 * 108.09959 * 179.97438 * 14 13 12 16 16 N 1.39944 * 108.86589 * 0.02562 * 15 14 13 17 17 C 1.46499 * 125.80258 * 180.02562 * 16 15 14 18 18 F 1.39902 * 109.47291 * 4.96209 * 17 16 15 19 19 F 1.39898 * 109.47464 * 124.97212 * 17 16 15 20 20 F 1.39906 * 109.46959 * 244.97047 * 17 16 15 21 21 C 1.34619 * 108.39376 * 359.72403 * 16 15 14 22 22 N 1.33046 * 121.08413 * 359.45521 * 12 11 10 23 23 C 1.31300 * 121.71130 * 0.58300 * 22 12 11 24 24 H 0.96990 * 120.00241 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.78782 * 359.95321 * 10 9 7 26 26 H 1.08001 * 120.27400 * 179.97438 * 11 10 9 27 27 H 1.08004 * 125.94466 * 0.03147 * 14 13 12 28 28 H 1.08001 * 126.30092 * 180.27167 * 21 16 15 29 29 H 1.08002 * 119.79276 * 179.70813 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4402 0.7000 7 6 2.0082 -1.2120 -0.0005 8 1 3.0500 -1.2341 0.2831 9 6 1.3527 -2.4048 -0.3714 10 6 0.2052 -2.3674 -1.1956 11 6 -0.3948 -3.5480 -1.5284 12 6 0.1350 -4.7498 -1.0447 13 6 -0.5183 -6.0281 -1.4007 14 6 -1.6046 -6.1948 -2.2862 15 7 -1.8935 -7.4666 -2.3386 16 7 -1.0176 -8.1646 -1.4996 17 6 -1.0129 -9.6131 -1.2801 18 9 -1.9497 -10.2161 -2.1263 19 9 0.2606 -10.1225 -1.5556 20 9 -1.3453 -9.8839 0.0517 21 6 -0.1757 -7.2796 -0.9337 22 7 1.2198 -4.7617 -0.2746 23 6 1.8316 -3.6532 0.0731 24 1 -0.4850 0.8399 -0.0004 25 1 -0.1881 -1.4274 -1.5534 26 1 -1.2735 -3.5541 -2.1562 27 1 -2.1084 -5.4073 -2.8270 28 1 0.6199 -7.5075 -0.2399 29 1 2.7074 -3.6986 0.7034 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242461760.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:01 Heat of formation + Delta-G solvation = -39.914037 kcal Electronic energy + Delta-G solvation = -20802.654264 eV Core-core repulsion = 16891.616331 eV Total energy + Delta-G solvation = -3911.037933 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.42650 -48.09878 -48.06091 -40.92077 -38.26790 -34.36066 -32.71203 -31.11624 -30.66091 -29.06482 -26.27137 -24.99913 -22.43375 -22.06687 -20.92503 -20.19944 -19.03095 -18.71948 -18.32644 -17.51925 -15.88152 -15.38207 -15.01967 -14.93667 -14.61132 -14.47847 -14.44220 -14.41468 -14.19264 -14.17383 -13.94858 -13.43035 -12.77495 -12.55621 -12.35062 -11.87314 -11.74616 -11.44844 -11.21001 -10.81215 -10.64809 -9.96329 -9.81720 -9.58168 -8.89580 -8.40713 -8.17138 -7.35898 -7.01027 -4.58551 1.28378 1.61669 2.27123 2.77494 2.86844 2.90302 2.94023 2.96575 3.45217 3.54110 3.72107 4.02586 4.50098 4.80051 5.03165 5.50101 5.55411 5.58224 6.01908 6.08825 6.48989 6.53747 6.68986 6.80305 6.82715 6.93097 7.14061 7.56234 7.62736 7.72519 7.83432 8.27930 8.48969 8.57183 9.48799 9.85925 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.049270 B = 0.003356 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.156265 B = 8342.471784 C = 8660.984831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.066 3.934 10 C -0.140 4.140 11 C -0.123 4.123 12 C 0.031 3.969 13 C -0.105 4.105 14 C 0.082 3.918 15 N -0.281 5.281 16 N -0.449 5.449 17 C 0.699 3.301 18 F -0.143 7.143 19 F -0.155 7.155 20 F -0.156 7.156 21 C 0.058 3.942 22 N -0.456 5.456 23 C -0.016 4.016 24 H 0.287 0.713 25 H 0.128 0.872 26 H 0.100 0.900 27 H 0.197 0.803 28 H 0.186 0.814 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 -9.124 -2.368 9.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.105 0.895 9 C 0.062 3.938 10 C -0.165 4.165 11 C -0.143 4.143 12 C -0.105 4.105 13 C -0.115 4.115 14 C -0.108 4.108 15 N -0.099 5.099 16 N -0.246 5.246 17 C 0.563 3.437 18 F -0.124 7.124 19 F -0.137 7.137 20 F -0.138 7.138 21 C -0.080 4.080 22 N -0.164 5.164 23 C -0.181 4.181 24 H 0.098 0.902 25 H 0.145 0.855 26 H 0.118 0.882 27 H 0.213 0.787 28 H 0.203 0.797 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.596 -10.850 -2.519 11.437 hybrid contribution 0.508 2.046 0.192 2.117 sum -2.088 -8.803 -2.327 9.342 Atomic orbital electron populations 1.69792 1.07832 1.30075 1.32454 1.26068 0.94847 1.01936 0.91981 0.86173 0.80516 0.79765 0.79621 1.18980 1.20047 1.18262 1.19651 0.98336 0.90973 1.37527 0.89542 1.18591 0.92099 0.93677 0.89467 1.21319 0.98584 0.97011 0.99585 1.21151 0.99455 0.93130 1.00595 1.17919 0.97196 0.88853 1.06568 1.19118 0.98705 0.92132 1.01542 1.24282 0.95963 0.93268 0.97294 1.77233 1.13610 1.06011 1.13006 1.48967 1.30739 1.03960 1.40947 1.17265 0.74544 0.77169 0.74705 1.93283 1.65307 1.82887 1.70961 1.93315 1.40066 1.86725 1.93556 1.93320 1.92304 1.93316 1.34860 1.22813 0.96541 0.88198 1.00484 1.66902 1.06803 1.32410 1.10243 1.22394 1.02738 0.87688 1.05247 0.90222 0.85466 0.88216 0.78671 0.79680 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.29 10.92 55.55 0.61 -17.69 15 2 C 0.07 1.64 5.17 -17.33 -0.09 1.55 15 3 Si 0.92 16.91 29.60 -169.99 -5.03 11.88 15 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 5 H -0.28 -5.01 7.11 56.52 0.40 -4.61 15 6 H -0.26 -4.73 7.11 56.52 0.40 -4.33 15 7 C -0.44 -10.48 9.06 -37.87 -0.34 -10.82 15 8 H 0.09 1.97 7.91 -52.48 -0.41 1.55 15 9 C 0.07 1.64 5.59 -106.64 -0.60 1.04 15 10 C -0.14 -3.34 8.74 -39.02 -0.34 -3.68 15 11 C -0.12 -2.66 9.54 -39.55 -0.38 -3.04 15 12 C 0.03 0.67 6.76 -82.74 -0.56 0.11 15 13 C -0.10 -1.96 6.09 -104.96 -0.64 -2.60 15 14 C 0.08 1.35 11.40 -17.01 -0.19 1.16 15 15 N -0.28 -4.73 12.16 30.84 0.38 -4.35 15 16 N -0.45 -7.26 3.86 -65.29 -0.25 -7.51 15 17 C 0.70 9.47 3.98 59.85 0.24 9.71 15 18 F -0.14 -1.91 17.14 2.25 0.04 -1.87 15 19 F -0.15 -1.97 17.38 2.25 0.04 -1.93 15 20 F -0.16 -2.02 17.50 2.25 0.04 -1.98 15 21 C 0.06 1.00 11.14 -16.45 -0.18 0.82 15 22 N -0.46 -10.53 10.05 -9.10 -0.09 -10.62 15 23 C -0.02 -0.38 10.97 -16.77 -0.18 -0.57 15 24 H 0.29 6.08 8.30 -40.82 -0.34 5.74 15 25 H 0.13 3.08 6.19 -52.48 -0.32 2.75 15 26 H 0.10 1.83 7.02 -52.49 -0.37 1.46 15 27 H 0.20 2.57 7.33 -52.48 -0.38 2.19 15 28 H 0.19 2.92 8.06 -52.49 -0.42 2.50 15 29 H 0.13 2.78 8.06 -52.49 -0.42 2.36 15 LS Contribution 281.24 15.07 4.24 4.24 Total: -1.00 -26.22 281.24 -4.78 -31.00 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -1.47 Total: 5.16 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -3.27 Total: -6.33 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.64 Total: -40.17 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.12 Total: -5.78 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.22 -4.78 -31.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242461760.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.910 kcal (2) G-P(sol) polarization free energy of solvation -26.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds