Wall clock time and date at job start Tue Mar 31 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86807 * 119.99831 * 2 1 4 4 H 1.48491 * 109.47054 * 269.99966 * 3 2 1 5 5 H 1.48496 * 109.46984 * 30.00193 * 3 2 1 6 6 H 1.48500 * 109.46770 * 150.00057 * 3 2 1 7 7 C 1.40044 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99748 * 163.16984 * 7 2 1 9 9 C 1.41533 * 119.99988 * 343.16282 * 7 2 1 10 10 C 1.41168 * 120.98197 * 336.10243 * 9 7 2 11 11 C 1.37680 * 119.08442 * 180.02562 * 10 9 7 12 12 N 1.31977 * 121.15339 * 359.97438 * 11 10 9 13 13 C 1.32780 * 122.20121 * 0.02562 * 12 11 10 14 14 C 1.48358 * 119.62155 * 180.02562 * 13 12 11 15 15 C 1.40895 * 126.24205 * 179.66189 * 14 13 12 16 16 N 1.30643 * 108.07894 * 179.85010 * 15 14 13 17 17 N 1.40006 * 108.54036 * 0.41283 * 16 15 14 18 18 C 1.46507 * 125.87536 * 179.76801 * 17 16 15 19 19 F 1.39897 * 109.46943 * 269.95620 * 18 17 16 20 20 F 1.39897 * 109.46949 * 29.95964 * 18 17 16 21 21 F 1.39899 * 109.46671 * 149.95947 * 18 17 16 22 22 C 1.34722 * 108.24603 * 359.73590 * 17 16 15 23 23 C 1.38955 * 120.76455 * 359.97438 * 13 12 11 24 24 H 0.96999 * 120.00111 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.46090 * 359.97438 * 10 9 7 26 26 H 1.07994 * 119.42014 * 180.02562 * 11 10 9 27 27 H 1.08004 * 125.96367 * 0.02562 * 15 14 13 28 28 H 1.08000 * 126.19603 * 179.97438 * 22 17 16 29 29 H 1.08002 * 120.61508 * 179.72565 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0465 -1.4000 5 1 1.4388 2.6527 0.7001 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2128 -0.0005 8 1 3.0530 -1.2326 -0.2714 9 6 1.3455 -2.4124 0.3540 10 6 0.1908 -2.3925 1.1658 11 6 -0.4220 -3.5828 1.4871 12 7 0.0514 -4.7344 1.0495 13 6 1.1335 -4.8095 0.2836 14 6 1.6155 -6.1349 -0.1767 15 6 2.7376 -6.3752 -0.9942 16 7 2.8377 -7.6650 -1.1764 17 7 1.7875 -8.2934 -0.4966 18 6 1.5352 -9.7359 -0.4516 19 9 0.6984 -10.0963 -1.5131 20 9 2.7480 -10.4249 -0.5590 21 9 0.9184 -10.0638 0.7605 22 6 1.0491 -7.3435 0.1096 23 6 1.8190 -3.6608 -0.0926 24 1 -0.4850 0.8400 0.0004 25 1 -0.2061 -1.4566 1.5304 26 1 -1.3059 -3.5739 2.1075 27 1 3.4012 -5.6244 -1.3973 28 1 0.1684 -7.5083 0.7126 29 1 2.7014 -3.7250 -0.7120 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242462495.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:36 Heat of formation + Delta-G solvation = -38.852410 kcal Electronic energy + Delta-G solvation = -20858.545221 eV Core-core repulsion = 16947.553324 eV Total energy + Delta-G solvation = -3910.991897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.50530 -48.20693 -48.10258 -41.13766 -38.21269 -34.26480 -32.84623 -31.18105 -30.73267 -28.47051 -26.19206 -25.53954 -22.51513 -22.12627 -20.95457 -20.21265 -19.09754 -18.89250 -18.51302 -17.26830 -15.72066 -15.21887 -15.09679 -14.91373 -14.56136 -14.53625 -14.50932 -14.41845 -14.24609 -14.24115 -14.15864 -13.48497 -12.82600 -12.59707 -12.41457 -12.38020 -11.50923 -11.23450 -11.07996 -10.86034 -10.39453 -9.94459 -9.89720 -9.51600 -9.11511 -8.14439 -8.09401 -7.24421 -6.92176 -4.67373 1.17741 1.52088 2.27973 2.68661 2.69656 2.98331 3.01524 3.08935 3.43913 3.47441 3.79966 3.95876 4.60042 4.69217 4.92802 5.32045 5.43191 5.60574 5.92624 6.10793 6.38328 6.58652 6.69494 6.81022 6.91348 7.03602 7.26313 7.36823 7.48422 7.77342 8.01572 8.36760 8.65199 8.66461 9.47340 9.99225 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.040530 B = 0.003556 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.682247 B = 7872.687274 C = 8323.183411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.129 3.871 10 C -0.211 4.211 11 C 0.090 3.910 12 N -0.572 5.572 13 C 0.189 3.811 14 C -0.135 4.135 15 C 0.096 3.904 16 N -0.279 5.279 17 N -0.453 5.453 18 C 0.700 3.300 19 F -0.156 7.156 20 F -0.145 7.145 21 F -0.149 7.149 22 C 0.090 3.910 23 C -0.254 4.254 24 H 0.284 0.716 25 H 0.126 0.874 26 H 0.123 0.877 27 H 0.201 0.799 28 H 0.191 0.809 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 -10.696 -0.188 10.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.485 4.485 8 H 0.101 0.899 9 C 0.121 3.879 10 C -0.233 4.233 11 C -0.062 4.062 12 N -0.287 5.287 13 C 0.054 3.946 14 C -0.146 4.146 15 C -0.094 4.094 16 N -0.096 5.096 17 N -0.249 5.249 18 C 0.564 3.436 19 F -0.138 7.138 20 F -0.126 7.126 21 F -0.131 7.131 22 C -0.050 4.050 23 C -0.277 4.277 24 H 0.095 0.905 25 H 0.144 0.856 26 H 0.140 0.860 27 H 0.218 0.782 28 H 0.208 0.792 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.719 -12.467 -0.470 12.594 hybrid contribution 0.135 2.088 0.111 2.095 sum 1.854 -10.380 -0.359 10.550 Atomic orbital electron populations 1.69762 1.07757 1.29719 1.33684 1.25981 0.94770 1.01626 0.91855 0.86252 0.80651 0.80149 0.79412 1.19302 1.19935 1.18277 1.19603 0.97919 0.90739 1.40254 0.89922 1.17732 0.90666 0.91979 0.87502 1.22247 1.00312 0.98190 1.02594 1.21903 0.98030 0.88343 0.97919 1.67231 1.14763 1.29474 1.17249 1.18240 0.92483 0.88647 0.95247 1.19024 0.98224 0.92561 1.04792 1.24383 0.96871 0.92643 0.95550 1.77402 1.06251 1.07995 1.17933 1.49187 1.26272 1.03729 1.45709 1.17249 0.74757 0.77029 0.74517 1.93322 1.71944 1.91373 1.57167 1.93294 1.44511 1.79029 1.95810 1.93309 1.83116 1.91916 1.44775 1.22669 0.97698 0.86945 0.97640 1.21699 1.04580 0.92651 1.08818 0.90487 0.85582 0.85991 0.78203 0.79209 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.01 10.92 55.55 0.61 -18.40 15 2 C 0.08 1.82 5.20 -17.34 -0.09 1.73 15 3 Si 0.91 17.43 29.59 -169.99 -5.03 12.40 15 4 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 7 C -0.45 -11.23 9.12 -37.65 -0.34 -11.57 15 8 H 0.08 1.94 7.90 -52.48 -0.41 1.52 15 9 C 0.13 3.24 5.60 -106.56 -0.60 2.64 15 10 C -0.21 -5.18 8.79 -38.67 -0.34 -5.52 15 11 C 0.09 2.04 11.15 -17.69 -0.20 1.84 15 12 N -0.57 -12.95 10.03 -9.94 -0.10 -13.05 15 13 C 0.19 4.13 6.75 -83.03 -0.56 3.57 15 14 C -0.14 -2.49 6.06 -105.35 -0.64 -3.13 15 15 C 0.10 1.56 11.40 -17.05 -0.19 1.37 15 16 N -0.28 -4.58 12.36 30.81 0.38 -4.20 15 17 N -0.45 -7.03 3.88 -65.65 -0.26 -7.28 15 18 C 0.70 9.06 4.10 59.85 0.25 9.30 15 19 F -0.16 -1.97 17.51 2.25 0.04 -1.93 15 20 F -0.15 -1.86 17.33 2.25 0.04 -1.82 15 21 F -0.15 -1.76 16.99 2.25 0.04 -1.72 15 22 C 0.09 1.47 10.74 -16.91 -0.18 1.29 15 23 C -0.25 -5.81 9.40 -38.35 -0.36 -6.17 15 24 H 0.28 6.23 8.29 -40.82 -0.34 5.89 15 25 H 0.13 3.15 6.20 -52.49 -0.33 2.83 15 26 H 0.12 2.42 8.06 -52.49 -0.42 2.00 15 27 H 0.20 2.69 7.32 -52.48 -0.38 2.30 15 28 H 0.19 2.81 8.06 -52.49 -0.42 2.39 15 29 H 0.10 2.11 7.02 -52.49 -0.37 1.74 15 LS Contribution 281.11 15.07 4.24 4.24 Total: -1.00 -26.90 281.11 -4.77 -31.67 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -1.47 Total: 4.74 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -3.26 Total: -4.65 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.63 Total: -42.93 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.12 Total: -5.47 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.90 -4.77 -31.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242462495.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.178 kcal (2) G-P(sol) polarization free energy of solvation -26.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds