Wall clock time and date at job start Tue Mar 31 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86807 * 119.99831 * 2 1 4 4 H 1.48491 * 109.47054 * 269.99966 * 3 2 1 5 5 H 1.48496 * 109.46984 * 30.00193 * 3 2 1 6 6 H 1.48500 * 109.46770 * 150.00057 * 3 2 1 7 7 C 1.40044 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99748 * 163.16984 * 7 2 1 9 9 C 1.41533 * 119.99988 * 343.16282 * 7 2 1 10 10 C 1.41168 * 120.98197 * 336.10243 * 9 7 2 11 11 C 1.37680 * 119.08442 * 180.02562 * 10 9 7 12 12 N 1.31977 * 121.15339 * 359.97438 * 11 10 9 13 13 C 1.32780 * 122.20121 * 0.02562 * 12 11 10 14 14 C 1.48358 * 119.62155 * 180.02562 * 13 12 11 15 15 C 1.40895 * 126.24205 * 179.66189 * 14 13 12 16 16 N 1.30643 * 108.07894 * 179.85010 * 15 14 13 17 17 N 1.40006 * 108.54036 * 0.41283 * 16 15 14 18 18 C 1.46507 * 125.87536 * 179.76801 * 17 16 15 19 19 F 1.39897 * 109.46943 * 269.95620 * 18 17 16 20 20 F 1.39897 * 109.46949 * 29.95964 * 18 17 16 21 21 F 1.39899 * 109.46671 * 149.95947 * 18 17 16 22 22 C 1.34722 * 108.24603 * 359.73590 * 17 16 15 23 23 C 1.38955 * 120.76455 * 359.97438 * 13 12 11 24 24 H 0.96999 * 120.00111 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.46090 * 359.97438 * 10 9 7 26 26 H 1.07994 * 119.42014 * 180.02562 * 11 10 9 27 27 H 1.08004 * 125.96367 * 0.02562 * 15 14 13 28 28 H 1.08000 * 126.19603 * 179.97438 * 22 17 16 29 29 H 1.08002 * 120.61508 * 179.72565 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0465 -1.4000 5 1 1.4388 2.6527 0.7001 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2128 -0.0005 8 1 3.0530 -1.2326 -0.2714 9 6 1.3455 -2.4124 0.3540 10 6 0.1908 -2.3925 1.1658 11 6 -0.4220 -3.5828 1.4871 12 7 0.0514 -4.7344 1.0495 13 6 1.1335 -4.8095 0.2836 14 6 1.6155 -6.1349 -0.1767 15 6 2.7376 -6.3752 -0.9942 16 7 2.8377 -7.6650 -1.1764 17 7 1.7875 -8.2934 -0.4966 18 6 1.5352 -9.7359 -0.4516 19 9 0.6984 -10.0963 -1.5131 20 9 2.7480 -10.4249 -0.5590 21 9 0.9184 -10.0638 0.7605 22 6 1.0491 -7.3435 0.1096 23 6 1.8190 -3.6608 -0.0926 24 1 -0.4850 0.8400 0.0004 25 1 -0.2061 -1.4566 1.5304 26 1 -1.3059 -3.5739 2.1075 27 1 3.4012 -5.6244 -1.3973 28 1 0.1684 -7.5083 0.7126 29 1 2.7014 -3.7250 -0.7120 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242462495.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:36 Heat of formation + Delta-G solvation = -53.632285 kcal Electronic energy + Delta-G solvation = -20859.186124 eV Core-core repulsion = 16947.553324 eV Total energy + Delta-G solvation = -3911.632801 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.53470 -49.21638 -49.13995 -42.44683 -39.94995 -36.02567 -34.16958 -32.74752 -32.43484 -29.98001 -27.92564 -26.82450 -24.08735 -23.63053 -22.35090 -21.71914 -20.16956 -20.12680 -19.68909 -18.88150 -17.38492 -16.56783 -16.28219 -16.19604 -16.04295 -15.92132 -15.76820 -15.68695 -15.56048 -15.28447 -15.27391 -14.75094 -14.34077 -14.18114 -14.12201 -13.86032 -13.15110 -12.88528 -12.70585 -12.27791 -11.97000 -11.69512 -11.25290 -11.15465 -10.62843 -9.95439 -9.88843 -8.89878 -8.66621 -6.52919 0.03111 0.15760 0.76992 0.97101 1.41909 1.50714 1.56849 1.62383 1.91151 2.20508 2.34882 2.83091 2.90651 3.44094 3.58857 3.80403 3.87921 4.13186 4.45817 4.54373 4.95218 5.02262 5.09115 5.15706 5.25922 5.33855 5.51652 5.58373 5.95938 6.15196 6.25680 6.55296 6.83362 6.84523 7.69750 8.26601 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.040530 B = 0.003556 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.682247 B = 7872.687274 C = 8323.183411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.038 3.962 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.485 4.485 8 H 0.086 0.914 9 C 0.102 3.898 10 C -0.238 4.238 11 C 0.089 3.911 12 N -0.578 5.578 13 C 0.193 3.807 14 C -0.169 4.169 15 C 0.104 3.896 16 N -0.288 5.288 17 N -0.454 5.454 18 C 0.706 3.294 19 F -0.152 7.152 20 F -0.142 7.142 21 F -0.139 7.139 22 C 0.110 3.890 23 C -0.271 4.271 24 H 0.292 0.708 25 H 0.114 0.886 26 H 0.148 0.852 27 H 0.223 0.777 28 H 0.206 0.794 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 -11.288 -0.373 11.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.516 4.516 8 H 0.104 0.896 9 C 0.094 3.906 10 C -0.260 4.260 11 C -0.062 4.062 12 N -0.294 5.294 13 C 0.058 3.942 14 C -0.180 4.180 15 C -0.086 4.086 16 N -0.105 5.105 17 N -0.250 5.250 18 C 0.571 3.429 19 F -0.133 7.133 20 F -0.123 7.123 21 F -0.121 7.121 22 C -0.031 4.031 23 C -0.294 4.294 24 H 0.103 0.897 25 H 0.132 0.868 26 H 0.165 0.835 27 H 0.239 0.761 28 H 0.223 0.777 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.217 -13.101 -0.664 13.304 hybrid contribution -0.064 2.107 0.167 2.115 sum 2.153 -10.994 -0.498 11.214 Atomic orbital electron populations 1.69811 1.09159 1.31060 1.33935 1.26830 0.95483 1.04714 0.90858 0.85160 0.79146 0.75621 0.79590 1.18620 1.19134 1.18090 1.19902 0.98337 0.91724 1.41606 0.89599 1.18131 0.91273 0.93198 0.87990 1.22230 1.01294 0.98404 1.04120 1.22274 0.98455 0.87915 0.97603 1.67345 1.15218 1.29117 1.17687 1.18634 0.91639 0.90022 0.93932 1.18925 1.00118 0.91748 1.07188 1.24681 0.96336 0.92990 0.94627 1.77393 1.06738 1.07989 1.18356 1.49380 1.25778 1.04754 1.45055 1.17120 0.74923 0.75949 0.74886 1.93336 1.71774 1.91146 1.57070 1.93307 1.44484 1.78716 1.95828 1.93338 1.82895 1.91653 1.44184 1.22852 0.97327 0.86643 0.96236 1.21925 1.05542 0.92403 1.09504 0.89720 0.86839 0.83509 0.76115 0.77707 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.06 10.92 21.84 0.24 -39.82 15 2 C 0.04 1.81 5.20 85.29 0.44 2.25 15 3 Si 0.98 35.51 29.59 68.60 2.03 37.54 15 4 H -0.26 -9.11 7.11 99.48 0.71 -8.40 15 5 H -0.27 -9.21 7.11 99.48 0.71 -8.50 15 6 H -0.26 -9.11 7.11 99.48 0.71 -8.41 15 7 C -0.49 -24.39 9.12 23.52 0.21 -24.18 15 8 H 0.09 4.09 7.90 -2.91 -0.02 4.06 15 9 C 0.10 5.22 5.60 -21.12 -0.12 5.10 15 10 C -0.24 -11.96 8.79 22.86 0.20 -11.76 15 11 C 0.09 4.07 11.15 84.54 0.94 5.01 15 12 N -0.58 -25.87 10.03 -185.35 -1.86 -27.73 15 13 C 0.19 8.33 6.75 41.87 0.28 8.62 15 14 C -0.17 -5.99 6.06 -20.34 -0.12 -6.11 15 15 C 0.10 3.21 11.40 85.52 0.98 4.18 15 16 N -0.29 -8.87 12.36 -56.44 -0.70 -9.57 15 17 N -0.45 -13.09 3.88 -361.60 -1.40 -14.49 15 18 C 0.71 16.59 4.10 127.77 0.52 17.11 15 19 F -0.15 -3.47 17.51 44.97 0.79 -2.68 15 20 F -0.14 -3.32 17.33 44.97 0.78 -2.54 15 21 F -0.14 -2.92 16.99 44.97 0.76 -2.15 15 22 C 0.11 3.39 10.74 83.85 0.90 4.29 15 23 C -0.27 -12.45 9.40 23.07 0.22 -12.23 15 24 H 0.29 12.90 8.29 -92.71 -0.77 12.13 15 25 H 0.11 5.88 6.20 -2.91 -0.02 5.86 15 26 H 0.15 5.75 8.06 -2.91 -0.02 5.72 15 27 H 0.22 5.55 7.32 -2.91 -0.02 5.53 15 28 H 0.21 5.59 8.06 -2.91 -0.02 5.57 15 29 H 0.12 4.91 7.02 -2.91 -0.02 4.89 15 Total: -1.00 -57.03 281.11 6.32 -50.71 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 1.22 Total: 18.46 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 4.46 Total: -7.72 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -3.72 Total: -91.61 kcal Atomic # 9 Polarization: -9.71 SS G_CDS: 2.33 Total: -7.38 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Total: -57.03 6.32 -50.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242462495.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.921 kcal (2) G-P(sol) polarization free energy of solvation -57.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds