Wall clock time and date at job start Tue Mar 31 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86807 * 119.99788 * 2 1 4 4 H 1.48496 * 109.46905 * 274.98253 * 3 2 1 5 5 H 1.48495 * 109.47256 * 34.98681 * 3 2 1 6 6 H 1.48502 * 109.47032 * 154.98860 * 3 2 1 7 7 C 1.40046 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00192 * 186.30554 * 7 2 1 9 9 C 1.40949 * 119.99724 * 6.31361 * 7 2 1 10 10 C 1.40900 * 119.68024 * 173.66252 * 9 7 2 11 11 C 1.36634 * 119.26104 * 180.02562 * 10 9 7 12 12 C 1.40279 * 118.60884 * 359.97438 * 11 10 9 13 13 C 1.47969 * 120.34830 * 179.97438 * 12 11 10 14 14 C 1.41113 * 126.37223 * 0.15816 * 13 12 11 15 15 N 1.30537 * 108.11944 * 180.28693 * 14 13 12 16 16 N 1.39958 * 108.86505 * 359.74130 * 15 14 13 17 17 C 1.46498 * 125.81300 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.47029 * 270.00119 * 17 16 15 19 19 F 1.39898 * 109.46978 * 30.00348 * 17 16 15 20 20 F 1.39898 * 109.46933 * 150.00046 * 17 16 15 21 21 C 1.34682 * 108.37579 * 0.02562 * 16 15 14 22 22 C 1.40128 * 119.30961 * 0.25356 * 12 11 10 23 23 N 1.31187 * 120.67550 * 359.47396 * 22 12 11 24 24 H 0.97004 * 119.99966 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.37216 * 0.03907 * 10 9 7 26 26 H 1.08004 * 120.69382 * 179.97438 * 11 10 9 27 27 H 1.08000 * 125.93923 * 359.97438 * 14 13 12 28 28 H 1.08002 * 126.30890 * 180.02562 * 21 16 15 29 29 H 1.07992 * 119.66232 * 179.74735 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4956 2.6200 0.8028 6 1 3.5878 1.4121 0.5920 7 6 2.0078 -1.2128 0.0005 8 1 3.0828 -1.2156 0.1033 9 6 1.3094 -2.4298 -0.1332 10 6 2.0271 -3.6350 -0.2665 11 6 1.3415 -4.8097 -0.3961 12 6 -0.0608 -4.7731 -0.3911 13 6 -0.8418 -6.0223 -0.5294 14 6 -0.3185 -7.3250 -0.6714 15 7 -1.3200 -8.1563 -0.7705 16 7 -2.5166 -7.4347 -0.6916 17 6 -3.8657 -8.0014 -0.7621 18 9 -4.2902 -8.0305 -2.0948 19 9 -3.8523 -9.3025 -0.2483 20 9 -4.7428 -7.2122 -0.0104 21 6 -2.2166 -6.1303 -0.5411 22 6 -0.7144 -3.5405 -0.2597 23 7 -0.0285 -2.4296 -0.1318 24 1 -0.4850 0.8401 0.0004 25 1 3.1071 -3.6303 -0.2660 26 1 1.8682 -5.7469 -0.5001 27 1 0.7287 -7.5880 -0.6988 28 1 -2.9227 -5.3181 -0.4499 29 1 -1.7937 -3.5053 -0.2592 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242463825.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:54 Heat of formation + Delta-G solvation = -30.643286 kcal Electronic energy + Delta-G solvation = -20851.039507 eV Core-core repulsion = 16940.403584 eV Total energy + Delta-G solvation = -3910.635923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.43776 -48.14044 -48.03937 -40.90482 -38.15737 -34.00718 -32.69482 -31.26277 -30.69937 -28.81764 -26.23730 -25.01679 -22.47926 -22.03562 -20.98202 -20.08330 -19.02930 -18.75921 -18.27642 -17.59554 -15.78471 -15.40763 -15.01204 -14.89122 -14.48936 -14.40602 -14.35624 -14.31126 -14.17888 -14.16693 -14.15479 -13.40932 -12.71500 -12.63342 -12.34968 -12.03313 -11.35780 -11.14732 -11.00770 -10.84931 -10.51766 -10.09123 -9.90732 -9.65071 -8.98951 -8.31841 -7.71325 -7.24381 -6.59790 -4.63231 1.28994 1.60245 2.31852 2.77375 2.89483 2.98830 3.00263 3.02793 3.52642 3.55024 3.80780 4.03476 4.63489 4.76957 5.01401 5.56155 5.77748 5.79421 5.90153 5.98775 6.12157 6.48978 6.63949 6.73974 6.85821 6.93229 7.22963 7.43795 7.53441 7.70598 7.87201 8.04960 8.46122 8.74437 9.94134 10.11322 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.037412 B = 0.003562 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.237717 B = 7859.917740 C = 8429.936434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.064 3.936 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.412 4.412 8 H 0.088 0.912 9 C 0.251 3.749 10 C -0.268 4.268 11 C -0.038 4.038 12 C -0.240 4.240 13 C -0.089 4.089 14 C 0.072 3.928 15 N -0.279 5.279 16 N -0.447 5.447 17 C 0.700 3.300 18 F -0.159 7.159 19 F -0.148 7.148 20 F -0.151 7.151 21 C 0.017 3.983 22 C 0.152 3.848 23 N -0.487 5.487 24 H 0.276 0.724 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.193 0.807 28 H 0.181 0.819 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 -8.754 -0.975 10.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.163 4.163 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.442 4.442 8 H 0.106 0.894 9 C 0.128 3.872 10 C -0.291 4.291 11 C -0.061 4.061 12 C -0.247 4.247 13 C -0.100 4.100 14 C -0.118 4.118 15 N -0.096 5.096 16 N -0.245 5.245 17 C 0.564 3.436 18 F -0.141 7.141 19 F -0.129 7.129 20 F -0.133 7.133 21 C -0.120 4.120 22 C -0.017 4.017 23 N -0.198 5.198 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.210 0.790 28 H 0.198 0.802 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.034 -9.015 -1.012 10.895 hybrid contribution 0.750 0.616 -0.045 0.972 sum -5.283 -8.400 -1.057 9.979 Atomic orbital electron populations 1.70132 1.07347 1.28290 1.26487 1.26174 0.94997 1.01460 0.93680 0.86247 0.80563 0.80464 0.79271 1.19282 1.19921 1.18320 1.19740 0.95016 0.89708 1.39706 0.89431 1.18641 0.88434 0.91940 0.88221 1.21411 0.98940 0.93760 1.14980 1.20504 0.92698 0.96746 0.96166 1.18325 0.92625 0.90847 1.22873 1.19380 0.90534 0.93718 1.06338 1.24271 0.98559 0.91202 0.97794 1.77184 0.88291 1.19586 1.24557 1.48871 1.03889 1.07152 1.64538 1.17249 0.76619 0.74938 0.74809 1.93315 1.89764 1.96074 1.34900 1.93284 1.95960 1.36837 1.86817 1.93299 1.68759 1.74747 1.76455 1.22673 0.97490 0.85060 1.06806 1.22628 0.98427 0.87892 0.92793 1.68785 1.07378 1.25919 1.17757 0.91233 0.88063 0.88441 0.78995 0.80155 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.66 11.47 55.55 0.64 -17.02 15 2 C 0.06 1.53 5.49 -17.34 -0.10 1.44 15 3 Si 0.91 17.44 29.57 -169.99 -5.03 12.42 15 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 7 C -0.41 -10.33 9.11 -37.88 -0.35 -10.67 15 8 H 0.09 2.03 7.85 -52.49 -0.41 1.62 15 9 C 0.25 6.44 6.54 -84.98 -0.56 5.89 15 10 C -0.27 -6.09 9.76 -39.15 -0.38 -6.47 15 11 C -0.04 -0.77 9.63 -39.39 -0.38 -1.15 15 12 C -0.24 -4.94 5.92 -104.43 -0.62 -5.56 15 13 C -0.09 -1.59 6.09 -104.94 -0.64 -2.23 15 14 C 0.07 1.14 11.45 -17.01 -0.19 0.95 15 15 N -0.28 -4.62 12.33 30.84 0.38 -4.24 15 16 N -0.45 -7.04 3.88 -65.28 -0.25 -7.30 15 17 C 0.70 9.35 4.10 59.85 0.25 9.59 15 18 F -0.16 -2.07 17.51 2.25 0.04 -2.03 15 19 F -0.15 -1.96 17.33 2.25 0.04 -1.92 15 20 F -0.15 -1.84 16.98 2.25 0.04 -1.81 15 21 C 0.02 0.27 10.50 -16.42 -0.17 0.10 15 22 C 0.15 3.42 10.75 -17.12 -0.18 3.24 15 23 N -0.49 -12.64 7.86 -10.84 -0.09 -12.73 15 24 H 0.28 6.25 8.29 -40.82 -0.34 5.91 15 25 H 0.10 2.10 8.06 -52.48 -0.42 1.68 15 26 H 0.10 1.65 7.16 -52.48 -0.38 1.28 15 27 H 0.19 2.46 7.41 -52.49 -0.39 2.07 15 28 H 0.18 2.51 7.34 -52.49 -0.38 2.12 15 29 H 0.12 2.34 7.05 -52.49 -0.37 1.97 15 LS Contribution 280.73 15.07 4.23 4.23 Total: -1.00 -27.72 280.73 -4.81 -32.53 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -1.49 Total: 2.75 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -3.32 Total: -4.89 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.68 Total: -41.28 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.12 Total: -5.75 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.72 -4.81 -32.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242463825.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.885 kcal (2) G-P(sol) polarization free energy of solvation -27.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds