Wall clock time and date at job start Tue Mar 31 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86807 * 119.99788 * 2 1 4 4 H 1.48496 * 109.46905 * 274.98253 * 3 2 1 5 5 H 1.48495 * 109.47256 * 34.98681 * 3 2 1 6 6 H 1.48502 * 109.47032 * 154.98860 * 3 2 1 7 7 C 1.40046 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00192 * 186.30554 * 7 2 1 9 9 C 1.40949 * 119.99724 * 6.31361 * 7 2 1 10 10 C 1.40900 * 119.68024 * 173.66252 * 9 7 2 11 11 C 1.36634 * 119.26104 * 180.02562 * 10 9 7 12 12 C 1.40279 * 118.60884 * 359.97438 * 11 10 9 13 13 C 1.47969 * 120.34830 * 179.97438 * 12 11 10 14 14 C 1.41113 * 126.37223 * 0.15816 * 13 12 11 15 15 N 1.30537 * 108.11944 * 180.28693 * 14 13 12 16 16 N 1.39958 * 108.86505 * 359.74130 * 15 14 13 17 17 C 1.46498 * 125.81300 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.47029 * 270.00119 * 17 16 15 19 19 F 1.39898 * 109.46978 * 30.00348 * 17 16 15 20 20 F 1.39898 * 109.46933 * 150.00046 * 17 16 15 21 21 C 1.34682 * 108.37579 * 0.02562 * 16 15 14 22 22 C 1.40128 * 119.30961 * 0.25356 * 12 11 10 23 23 N 1.31187 * 120.67550 * 359.47396 * 22 12 11 24 24 H 0.97004 * 119.99966 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.37216 * 0.03907 * 10 9 7 26 26 H 1.08004 * 120.69382 * 179.97438 * 11 10 9 27 27 H 1.08000 * 125.93923 * 359.97438 * 14 13 12 28 28 H 1.08002 * 126.30890 * 180.02562 * 21 16 15 29 29 H 1.07992 * 119.66232 * 179.74735 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4956 2.6200 0.8028 6 1 3.5878 1.4121 0.5920 7 6 2.0078 -1.2128 0.0005 8 1 3.0828 -1.2156 0.1033 9 6 1.3094 -2.4298 -0.1332 10 6 2.0271 -3.6350 -0.2665 11 6 1.3415 -4.8097 -0.3961 12 6 -0.0608 -4.7731 -0.3911 13 6 -0.8418 -6.0223 -0.5294 14 6 -0.3185 -7.3250 -0.6714 15 7 -1.3200 -8.1563 -0.7705 16 7 -2.5166 -7.4347 -0.6916 17 6 -3.8657 -8.0014 -0.7621 18 9 -4.2902 -8.0305 -2.0948 19 9 -3.8523 -9.3025 -0.2483 20 9 -4.7428 -7.2122 -0.0104 21 6 -2.2166 -6.1303 -0.5411 22 6 -0.7144 -3.5405 -0.2597 23 7 -0.0285 -2.4296 -0.1318 24 1 -0.4850 0.8401 0.0004 25 1 3.1071 -3.6303 -0.2660 26 1 1.8682 -5.7469 -0.5001 27 1 0.7287 -7.5880 -0.6988 28 1 -2.9227 -5.3181 -0.4499 29 1 -1.7937 -3.5053 -0.2592 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242463825.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:53 Heat of formation + Delta-G solvation = -46.227476 kcal Electronic energy + Delta-G solvation = -20851.715288 eV Core-core repulsion = 16940.403584 eV Total energy + Delta-G solvation = -3911.311704 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.50286 -49.18842 -49.11153 -42.21619 -39.87920 -35.69264 -34.07655 -32.75652 -32.41775 -30.35716 -27.70005 -26.43511 -24.02735 -23.61537 -22.31534 -21.52265 -20.10192 -19.98061 -19.51552 -19.25734 -17.42302 -16.79322 -16.13115 -16.03618 -15.94413 -15.83001 -15.65980 -15.59112 -15.53732 -15.25086 -15.24800 -14.63564 -14.30370 -14.11641 -14.04006 -13.57178 -12.91434 -12.72990 -12.65759 -12.36199 -11.97975 -11.72047 -11.43398 -11.03658 -10.59056 -10.02717 -9.47291 -8.86504 -8.32169 -6.43108 0.12582 0.24557 0.82159 1.22467 1.42944 1.47688 1.56963 1.67300 2.04203 2.22875 2.41485 2.89844 2.95607 3.53486 3.79823 3.99402 4.20659 4.26483 4.41232 4.48477 4.64437 4.93288 5.07333 5.20298 5.27086 5.45597 5.55579 5.77443 5.92280 6.15035 6.28283 6.35666 6.71753 6.96165 8.19565 8.41622 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.037412 B = 0.003562 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.237717 B = 7859.917740 C = 8429.936434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.022 3.978 3 Si 0.987 3.013 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.455 4.455 8 H 0.092 0.908 9 C 0.218 3.782 10 C -0.283 4.283 11 C -0.039 4.039 12 C -0.218 4.218 13 C -0.123 4.123 14 C 0.083 3.917 15 N -0.293 5.293 16 N -0.452 5.452 17 C 0.705 3.295 18 F -0.154 7.154 19 F -0.145 7.145 20 F -0.142 7.142 21 C 0.040 3.960 22 C 0.124 3.876 23 N -0.523 5.523 24 H 0.281 0.719 25 H 0.114 0.886 26 H 0.138 0.862 27 H 0.223 0.777 28 H 0.201 0.799 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 -10.069 -1.177 11.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.201 4.201 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.486 4.486 8 H 0.111 0.889 9 C 0.094 3.906 10 C -0.306 4.306 11 C -0.062 4.062 12 C -0.224 4.224 13 C -0.134 4.134 14 C -0.106 4.106 15 N -0.111 5.111 16 N -0.248 5.248 17 C 0.570 3.430 18 F -0.136 7.136 19 F -0.126 7.126 20 F -0.123 7.123 21 C -0.098 4.098 22 C -0.042 4.042 23 N -0.235 5.235 24 H 0.091 0.909 25 H 0.132 0.868 26 H 0.156 0.844 27 H 0.239 0.761 28 H 0.218 0.782 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.131 -10.386 -1.217 12.122 hybrid contribution 0.598 0.711 -0.007 0.929 sum -5.533 -9.675 -1.224 11.213 Atomic orbital electron populations 1.70223 1.08933 1.29330 1.28480 1.27043 0.95739 1.04692 0.92623 0.85118 0.79204 0.75717 0.79245 1.18949 1.19339 1.17645 1.20044 0.95486 0.90704 1.42354 0.88950 1.19077 0.88890 0.93415 0.89194 1.21612 0.99743 0.93805 1.15409 1.20923 0.92846 0.97645 0.94827 1.18531 0.93112 0.91290 1.19501 1.19268 0.91192 0.93430 1.09463 1.24696 0.99848 0.89988 0.96097 1.77197 0.88570 1.20009 1.25301 1.49097 1.04757 1.07073 1.63904 1.17138 0.75906 0.75014 0.74982 1.93327 1.89564 1.96058 1.34672 1.93295 1.95876 1.36661 1.86806 1.93327 1.68244 1.74520 1.76253 1.23043 0.97572 0.85769 1.03454 1.23018 0.99392 0.88225 0.93591 1.68709 1.08020 1.27782 1.18999 0.90870 0.86820 0.84431 0.76110 0.78248 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.05 11.47 21.84 0.25 -38.80 15 2 C 0.02 1.06 5.49 85.29 0.47 1.53 15 3 Si 0.99 36.54 29.57 68.60 2.03 38.56 15 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 15 5 H -0.27 -9.56 7.11 99.48 0.71 -8.85 15 6 H -0.25 -8.95 7.11 99.48 0.71 -8.24 15 7 C -0.46 -23.65 9.11 23.37 0.21 -23.44 15 8 H 0.09 4.44 7.85 -2.91 -0.02 4.42 15 9 C 0.22 11.54 6.54 40.16 0.26 11.80 15 10 C -0.28 -12.87 9.76 22.55 0.22 -12.65 15 11 C -0.04 -1.52 9.63 22.39 0.22 -1.30 15 12 C -0.22 -8.66 5.92 -19.74 -0.12 -8.78 15 13 C -0.12 -4.05 6.09 -20.07 -0.12 -4.17 15 14 C 0.08 2.37 11.45 85.59 0.98 3.35 15 15 N -0.29 -8.82 12.33 -56.35 -0.69 -9.52 15 16 N -0.45 -12.93 3.88 -360.44 -1.40 -14.32 15 17 C 0.70 16.94 4.10 127.77 0.52 17.46 15 18 F -0.15 -3.63 17.51 44.97 0.79 -2.84 15 19 F -0.14 -3.48 17.33 44.97 0.78 -2.71 15 20 F -0.14 -3.09 16.98 44.97 0.76 -2.32 15 21 C 0.04 1.18 10.50 84.18 0.88 2.06 15 22 C 0.12 5.62 10.75 85.25 0.92 6.53 15 23 N -0.52 -27.92 7.86 -188.21 -1.48 -29.40 15 24 H 0.28 13.18 8.29 -92.71 -0.77 12.41 15 25 H 0.11 4.71 8.06 -2.91 -0.02 4.68 15 26 H 0.14 4.18 7.16 -2.91 -0.02 4.16 15 27 H 0.22 4.72 7.41 -2.91 -0.02 4.70 15 28 H 0.20 5.00 7.34 -2.91 -0.02 4.97 15 29 H 0.13 5.33 7.05 -2.91 -0.02 5.31 15 Total: -1.00 -60.91 280.73 6.70 -54.21 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.22 Total: 14.74 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 4.44 Total: -7.60 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -3.32 Total: -92.03 kcal Atomic # 9 Polarization: -10.20 SS G_CDS: 2.33 Total: -7.87 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.56 kcal Total: -60.91 6.70 -54.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242463825.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.978 kcal (2) G-P(sol) polarization free energy of solvation -60.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds