Wall clock time and date at job start Tue Mar 31 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30722 * 1 3 3 Si 1.86800 * 120.00329 * 2 1 4 4 H 1.48500 * 109.47541 * 240.00304 * 3 2 1 5 5 H 1.48500 * 109.46891 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47505 * 120.00183 * 3 2 1 7 7 C 1.40107 * 120.00383 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00785 * 180.02562 * 7 2 1 9 9 C 1.40768 * 119.99498 * 359.97438 * 7 2 1 10 10 N 1.33719 * 119.94354 * 0.02562 * 9 7 2 11 11 C 1.31275 * 121.63229 * 179.97438 * 10 9 7 12 12 C 1.39079 * 121.34725 * 0.02562 * 11 10 9 13 13 C 1.38347 * 119.73210 * 0.26330 * 12 11 10 14 14 C 1.39712 * 118.47981 * 359.47581 * 13 12 11 15 15 C 1.47800 * 120.65707 * 180.26570 * 14 13 12 16 16 C 1.41179 * 126.39074 * 130.27376 * 15 14 13 17 17 N 1.30519 * 108.10810 * 179.97438 * 16 15 14 18 18 N 1.39950 * 108.89081 * 0.02562 * 17 16 15 19 19 C 1.46501 * 125.79686 * 179.97438 * 18 17 16 20 20 F 1.39905 * 109.46708 * 5.03339 * 19 18 17 21 21 F 1.39906 * 109.46775 * 125.02816 * 19 18 17 22 22 F 1.39894 * 109.47416 * 245.03107 * 19 18 17 23 23 C 1.34653 * 108.40240 * 359.75498 * 18 17 16 24 24 H 0.97001 * 119.99597 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.32746 * 179.97438 * 11 10 9 26 26 H 1.08002 * 120.13069 * 179.97438 * 12 11 10 27 27 H 1.08000 * 120.76060 * 179.72277 * 13 12 11 28 28 H 1.08000 * 125.93895 * 359.97438 * 16 15 14 29 29 H 1.08003 * 126.31164 * 180.27765 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0950 1.6964 -1.2125 5 1 1.2763 2.7464 0.0006 6 1 3.0951 1.6964 1.2124 7 6 2.0078 -1.2133 -0.0005 8 1 3.0878 -1.2134 -0.0001 9 6 1.3040 -2.4324 -0.0005 10 7 -0.0332 -2.4310 -0.0005 11 6 -0.7228 -3.5481 -0.0010 12 6 -0.0922 -4.7877 -0.0011 13 6 1.2896 -4.8545 0.0050 14 6 2.0144 -3.6601 -0.0003 15 6 3.4923 -3.6754 -0.0001 16 6 4.3375 -2.9534 -0.8704 17 7 5.5740 -3.2291 -0.5563 18 7 5.5794 -4.1292 0.5153 19 6 6.7710 -4.6845 1.1619 20 9 7.9155 -4.0898 0.6200 21 9 6.7182 -4.4277 2.5362 22 9 6.8171 -6.0661 0.9471 23 6 4.3035 -4.3944 0.8541 24 1 -0.4849 0.8401 0.0004 25 1 -1.8020 -3.5036 -0.0006 26 1 -0.6790 -5.6944 -0.0011 27 1 1.7965 -5.8082 0.0095 28 1 4.0167 -2.2886 -1.6587 29 1 3.9754 -5.0501 1.6472 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242464259.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:36 Heat of formation + Delta-G solvation = -41.682194 kcal Electronic energy + Delta-G solvation = -21493.138525 eV Core-core repulsion = 17582.023919 eV Total energy + Delta-G solvation = -3911.114606 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.48203 -49.13991 -49.11672 -42.19158 -39.78524 -35.51369 -34.25981 -32.96055 -32.00445 -30.07562 -27.54566 -26.79286 -23.97119 -23.26947 -22.49726 -21.43010 -20.08910 -19.94900 -19.42199 -19.31583 -17.38101 -16.69222 -16.18392 -16.12216 -15.95888 -15.88537 -15.52031 -15.48596 -15.44590 -15.23057 -15.21427 -14.67287 -14.32663 -14.14956 -13.70385 -13.55706 -12.92193 -12.84250 -12.72269 -12.35590 -11.97347 -11.66903 -11.20282 -10.91744 -10.38832 -9.80333 -9.44810 -9.01143 -8.26862 -6.42792 0.15515 0.38333 0.87384 1.15835 1.42252 1.51911 1.57071 1.68626 1.88976 2.22638 2.44884 2.88809 2.96004 3.59275 3.84448 3.99855 4.26666 4.38441 4.44449 4.65106 4.80304 4.89493 5.09470 5.25081 5.32494 5.46947 5.60375 5.79408 5.96223 6.21730 6.34782 6.38930 6.77064 7.03255 8.24022 8.45528 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.017076 B = 0.006049 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.308910 B = 4627.464623 C = 5897.966683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.030 3.970 3 Si 0.970 3.030 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.448 4.448 8 H 0.093 0.907 9 C 0.240 3.760 10 N -0.521 5.521 11 C 0.108 3.892 12 C -0.310 4.310 13 C -0.041 4.041 14 C -0.204 4.204 15 C -0.122 4.122 16 C 0.092 3.908 17 N -0.297 5.297 18 N -0.452 5.452 19 C 0.705 3.295 20 F -0.142 7.142 21 F -0.149 7.149 22 F -0.148 7.148 23 C 0.057 3.943 24 H 0.279 0.721 25 H 0.135 0.865 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.202 0.798 29 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.238 -6.781 2.077 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.478 4.478 8 H 0.111 0.889 9 C 0.116 3.884 10 N -0.234 5.234 11 C -0.058 4.058 12 C -0.333 4.333 13 C -0.065 4.065 14 C -0.210 4.210 15 C -0.132 4.132 16 C -0.098 4.098 17 N -0.115 5.115 18 N -0.249 5.249 19 C 0.570 3.430 20 F -0.124 7.124 21 F -0.130 7.130 22 F -0.130 7.130 23 C -0.082 4.082 24 H 0.090 0.910 25 H 0.152 0.848 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.218 0.782 29 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 10.035 -5.697 1.920 11.698 hybrid contribution -0.310 -0.308 0.309 0.536 sum 9.724 -6.006 2.229 11.645 Atomic orbital electron populations 1.70204 1.08728 1.29120 1.29001 1.26891 0.95519 1.04167 0.92700 0.85427 0.78875 0.76453 0.80103 1.17852 1.19373 1.19037 1.19882 0.94961 0.90010 1.42985 0.88884 1.18907 0.88239 0.92369 0.88913 1.68715 1.07852 1.28373 1.18450 1.23017 0.99815 0.89220 0.93791 1.21559 0.95081 0.98245 1.18378 1.21244 0.93879 0.96442 0.94929 1.18819 0.89809 0.94054 1.18303 1.19143 0.93150 1.02121 0.98818 1.24566 0.88737 0.97502 0.98954 1.77228 1.21983 1.09374 1.02879 1.49131 1.04796 1.40414 1.30534 1.17126 0.75885 0.75049 0.74929 1.93290 1.49298 1.83840 1.85953 1.93334 1.95823 1.93916 1.29950 1.93328 1.95799 1.29265 1.94562 1.23205 0.81449 1.02466 1.01034 0.91032 0.84779 0.85574 0.85454 0.78164 0.77584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.97 11.46 21.85 0.25 -38.72 15 2 C 0.03 1.47 5.50 85.31 0.47 1.94 15 3 Si 0.97 37.15 29.56 68.60 2.03 39.18 15 4 H -0.25 -9.34 7.11 99.48 0.71 -8.63 15 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 15 6 H -0.27 -10.12 7.11 99.48 0.71 -9.42 15 7 C -0.45 -22.64 8.47 23.34 0.20 -22.45 15 8 H 0.09 4.43 5.37 -2.91 -0.02 4.41 15 9 C 0.24 12.35 6.57 40.37 0.27 12.61 15 10 N -0.52 -27.70 7.85 -188.41 -1.48 -29.18 15 11 C 0.11 4.91 11.17 84.98 0.95 5.86 15 12 C -0.31 -12.39 10.10 22.50 0.23 -12.16 15 13 C -0.04 -1.60 9.86 22.65 0.22 -1.38 15 14 C -0.20 -9.01 5.83 -19.50 -0.11 -9.12 15 15 C -0.12 -4.68 5.08 -20.08 -0.10 -4.78 15 16 C 0.09 3.40 9.92 85.61 0.85 4.24 15 17 N -0.30 -10.58 12.16 -56.31 -0.68 -11.26 15 18 N -0.45 -14.32 3.86 -360.36 -1.39 -15.71 15 19 C 0.71 18.18 3.98 127.77 0.51 18.68 15 20 F -0.14 -3.76 17.14 44.97 0.77 -2.99 15 21 F -0.15 -3.58 17.38 44.97 0.78 -2.80 15 22 F -0.15 -3.42 17.50 44.97 0.79 -2.63 15 23 C 0.06 1.83 11.33 84.21 0.95 2.78 15 24 H 0.28 13.22 8.29 -92.71 -0.77 12.46 15 25 H 0.13 5.42 8.06 -2.91 -0.02 5.40 15 26 H 0.13 4.19 8.06 -2.91 -0.02 4.16 15 27 H 0.13 4.15 8.06 -2.91 -0.02 4.12 15 28 H 0.20 7.10 7.85 -2.91 -0.02 7.08 15 29 H 0.21 5.23 8.06 -2.91 -0.02 5.20 15 Total: -1.00 -58.96 279.78 6.71 -52.25 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.22 Total: 15.63 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 4.43 Total: -3.76 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -3.30 Total: -94.88 kcal Atomic # 9 Polarization: -10.76 SS G_CDS: 2.34 Total: -8.42 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -58.96 6.71 -52.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242464259.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.570 kcal (2) G-P(sol) polarization free energy of solvation -58.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds