Wall clock time and date at job start Tue Mar 31 2020 06:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86794 * 120.00026 * 2 1 4 4 H 1.48497 * 109.47057 * 274.73598 * 3 2 1 5 5 H 1.48513 * 109.47163 * 34.73194 * 3 2 1 6 6 H 1.48497 * 109.47552 * 154.73067 * 3 2 1 7 7 C 1.40123 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99664 * 164.51189 * 7 2 1 9 9 C 1.40889 * 120.00399 * 344.51222 * 7 2 1 10 10 C 1.41140 * 121.10973 * 335.06786 * 9 7 2 11 11 C 1.36432 * 119.11465 * 180.27946 * 10 9 7 12 12 N 1.32241 * 121.51662 * 359.76205 * 11 10 9 13 13 C 1.31654 * 122.50724 * 359.97438 * 12 11 10 14 14 C 1.39354 * 120.65083 * 359.97438 * 13 12 11 15 15 C 1.47858 * 120.78255 * 180.02562 * 14 13 12 16 16 C 1.41158 * 126.37629 * 130.02694 * 15 14 13 17 17 N 1.30532 * 108.11166 * 179.97438 * 16 15 14 18 18 N 1.39944 * 108.88035 * 359.97438 * 17 16 15 19 19 C 1.46500 * 125.80145 * 179.97438 * 18 17 16 20 20 F 1.39903 * 109.47274 * 5.03170 * 19 18 17 21 21 F 1.39902 * 109.47176 * 125.03142 * 19 18 17 22 22 F 1.39903 * 109.47209 * 245.02753 * 19 18 17 23 23 C 1.34687 * 108.39506 * 0.02562 * 18 17 16 24 24 H 0.96999 * 119.99833 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.44474 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.24707 * 179.74158 * 11 10 9 27 27 H 1.08000 * 119.67390 * 179.97438 * 13 12 11 28 28 H 1.07995 * 125.93900 * 0.23315 * 16 15 14 29 29 H 1.07995 * 126.30820 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3886 2.1041 -1.3953 5 1 1.4923 2.6218 0.7977 6 1 3.5852 1.4134 0.5976 7 6 2.0079 -1.2135 0.0005 8 1 3.0584 -1.2306 -0.2492 9 6 1.3418 -2.4114 0.3269 10 6 0.1831 -2.4053 1.1327 11 6 -0.4262 -3.5897 1.4283 12 7 0.0414 -4.7400 0.9735 13 6 1.1136 -4.8170 0.2134 14 6 1.8115 -3.6666 -0.1493 15 6 3.0157 -3.7497 -1.0032 16 6 3.2712 -2.9916 -2.1662 17 7 4.4345 -3.3506 -2.6371 18 7 4.9721 -4.3421 -1.8086 19 6 6.2640 -5.0071 -1.9952 20 9 6.9399 -4.4198 -3.0702 21 9 7.0304 -4.8718 -0.8326 22 9 6.0556 -6.3647 -2.2609 23 6 4.0993 -4.5817 -0.8112 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2136 -1.4759 1.5138 26 1 -1.3105 -3.5879 2.0482 27 1 1.4557 -5.7813 -0.1324 28 1 2.6196 -2.2418 -2.5899 29 1 4.2249 -5.2935 -0.0087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242464366.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:40 Heat of formation + Delta-G solvation = -38.504166 kcal Electronic energy + Delta-G solvation = -21473.494818 eV Core-core repulsion = 17562.518022 eV Total energy + Delta-G solvation = -3910.976796 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.34647 -48.02493 -47.97654 -40.75214 -38.24733 -34.30642 -32.75090 -31.35915 -30.29935 -28.35103 -26.11394 -25.44435 -22.36323 -21.72646 -21.08848 -19.97892 -18.95371 -18.65817 -18.15583 -17.66031 -15.68875 -15.25469 -14.93324 -14.76712 -14.61062 -14.47186 -14.40345 -14.17293 -14.15022 -14.01533 -13.95392 -13.30970 -12.75629 -12.63191 -12.37852 -12.15787 -11.54424 -11.35468 -11.11778 -10.67152 -10.43290 -9.95574 -9.58885 -9.53758 -8.76053 -8.10685 -7.93342 -7.41827 -6.97123 -4.72677 1.41195 1.79192 2.48265 2.70405 2.87061 2.95498 3.00104 3.14587 3.39513 3.65102 3.74768 4.11500 4.51383 4.91975 5.24922 5.50280 5.72832 5.77858 6.05885 6.26037 6.30553 6.71136 6.77350 6.81364 7.01452 7.05440 7.24893 7.39070 7.70475 7.83720 7.97761 8.31539 8.57711 8.61691 9.53062 9.89036 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.005983 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.446208 B = 4679.004149 C = 5934.716044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.079 3.921 3 Si 0.908 3.092 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.441 4.441 8 H 0.085 0.915 9 C 0.146 3.854 10 C -0.206 4.206 11 C 0.081 3.919 12 N -0.578 5.578 13 C 0.129 3.871 14 C -0.204 4.204 15 C -0.089 4.089 16 C 0.102 3.898 17 N -0.287 5.287 18 N -0.452 5.452 19 C 0.699 3.301 20 F -0.143 7.143 21 F -0.157 7.157 22 F -0.159 7.159 23 C 0.034 3.966 24 H 0.286 0.714 25 H 0.127 0.873 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.199 0.801 29 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.944 -3.744 -2.189 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.471 4.471 8 H 0.103 0.897 9 C 0.138 3.862 10 C -0.228 4.228 11 C -0.066 4.066 12 N -0.292 5.292 13 C -0.030 4.030 14 C -0.211 4.211 15 C -0.100 4.100 16 C -0.088 4.088 17 N -0.105 5.105 18 N -0.248 5.248 19 C 0.563 3.437 20 F -0.125 7.125 21 F -0.139 7.139 22 F -0.141 7.141 23 C -0.104 4.104 24 H 0.097 0.903 25 H 0.144 0.856 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.216 0.784 29 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 8.287 -4.274 -2.849 9.749 hybrid contribution 0.369 1.387 0.413 1.493 sum 8.656 -2.887 -2.436 9.444 Atomic orbital electron populations 1.69753 1.07758 1.29943 1.32600 1.26021 0.94751 1.01656 0.91831 0.86268 0.80822 0.80213 0.79483 1.19140 1.19789 1.18229 1.19561 0.97543 0.90452 1.39517 0.89730 1.17705 0.90250 0.91190 0.87055 1.21916 0.99949 0.98303 1.02681 1.21717 0.98152 0.88829 0.97941 1.67326 1.15663 1.29125 1.17078 1.22075 0.91296 0.95710 0.93899 1.18802 0.99343 0.94990 1.07963 1.19148 0.95376 0.98309 0.97173 1.24511 0.92491 0.97764 0.93992 1.77286 1.12545 1.04719 1.15904 1.48926 1.15094 1.35435 1.25372 1.17270 0.76893 0.74988 0.74584 1.93280 1.79680 1.84060 1.55458 1.93308 1.75392 1.95579 1.49593 1.93306 1.94567 1.32512 1.93704 1.22870 0.90073 1.03609 0.93840 0.90292 0.85554 0.86424 0.86235 0.78425 0.80441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.97 10.91 55.56 0.61 -17.36 15 2 C 0.08 1.76 5.22 -17.31 -0.09 1.67 15 3 Si 0.91 17.13 29.59 -169.99 -5.03 12.10 15 4 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 5 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 7 C -0.44 -10.35 7.95 -37.87 -0.30 -10.65 15 8 H 0.08 1.97 6.78 -52.49 -0.36 1.61 15 9 C 0.15 3.51 5.62 -106.26 -0.60 2.91 15 10 C -0.21 -4.94 8.72 -39.13 -0.34 -5.28 15 11 C 0.08 1.84 11.09 -18.03 -0.20 1.64 15 12 N -0.58 -13.27 10.32 -13.36 -0.14 -13.41 15 13 C 0.13 2.78 10.90 -17.21 -0.19 2.59 15 14 C -0.20 -4.50 5.84 -104.01 -0.61 -5.11 15 15 C -0.09 -1.75 5.04 -104.95 -0.53 -2.28 15 16 C 0.10 1.93 10.49 -17.00 -0.18 1.76 15 17 N -0.29 -5.31 12.16 30.85 0.38 -4.94 15 18 N -0.45 -7.61 3.86 -65.26 -0.25 -7.87 15 19 C 0.70 9.89 3.97 59.85 0.24 10.12 15 20 F -0.14 -2.05 17.14 2.25 0.04 -2.01 15 21 F -0.16 -2.09 17.39 2.25 0.04 -2.05 15 22 F -0.16 -2.08 17.50 2.25 0.04 -2.04 15 23 C 0.03 0.57 11.34 -16.40 -0.19 0.38 15 24 H 0.29 6.01 8.29 -40.82 -0.34 5.67 15 25 H 0.13 3.07 6.22 -52.49 -0.33 2.74 15 26 H 0.12 2.36 8.06 -52.49 -0.42 1.94 15 27 H 0.12 2.26 8.06 -52.49 -0.42 1.83 15 28 H 0.20 3.56 8.01 -52.49 -0.42 3.14 15 29 H 0.18 2.52 8.06 -52.49 -0.42 2.09 15 LS Contribution 279.82 15.07 4.22 4.22 Total: -1.00 -25.75 279.82 -4.59 -30.34 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -1.51 Total: 5.25 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.98 Total: -2.23 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.59 Total: -43.58 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.12 Total: -6.10 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -25.75 -4.59 -30.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242464366.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.161 kcal (2) G-P(sol) polarization free energy of solvation -25.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds