Wall clock time and date at job start Tue Mar 31 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86794 * 120.00026 * 2 1 4 4 H 1.48497 * 109.47057 * 274.73598 * 3 2 1 5 5 H 1.48513 * 109.47163 * 34.73194 * 3 2 1 6 6 H 1.48497 * 109.47552 * 154.73067 * 3 2 1 7 7 C 1.40123 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99664 * 164.51189 * 7 2 1 9 9 C 1.40889 * 120.00399 * 344.51222 * 7 2 1 10 10 C 1.41140 * 121.10973 * 335.06786 * 9 7 2 11 11 C 1.36432 * 119.11465 * 180.27946 * 10 9 7 12 12 N 1.32241 * 121.51662 * 359.76205 * 11 10 9 13 13 C 1.31654 * 122.50724 * 359.97438 * 12 11 10 14 14 C 1.39354 * 120.65083 * 359.97438 * 13 12 11 15 15 C 1.47858 * 120.78255 * 180.02562 * 14 13 12 16 16 C 1.41158 * 126.37629 * 130.02694 * 15 14 13 17 17 N 1.30532 * 108.11166 * 179.97438 * 16 15 14 18 18 N 1.39944 * 108.88035 * 359.97438 * 17 16 15 19 19 C 1.46500 * 125.80145 * 179.97438 * 18 17 16 20 20 F 1.39903 * 109.47274 * 5.03170 * 19 18 17 21 21 F 1.39902 * 109.47176 * 125.03142 * 19 18 17 22 22 F 1.39903 * 109.47209 * 245.02753 * 19 18 17 23 23 C 1.34687 * 108.39506 * 0.02562 * 18 17 16 24 24 H 0.96999 * 119.99833 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.44474 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.24707 * 179.74158 * 11 10 9 27 27 H 1.08000 * 119.67390 * 179.97438 * 13 12 11 28 28 H 1.07995 * 125.93900 * 0.23315 * 16 15 14 29 29 H 1.07995 * 126.30820 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3886 2.1041 -1.3953 5 1 1.4923 2.6218 0.7977 6 1 3.5852 1.4134 0.5976 7 6 2.0079 -1.2135 0.0005 8 1 3.0584 -1.2306 -0.2492 9 6 1.3418 -2.4114 0.3269 10 6 0.1831 -2.4053 1.1327 11 6 -0.4262 -3.5897 1.4283 12 7 0.0414 -4.7400 0.9735 13 6 1.1136 -4.8170 0.2134 14 6 1.8115 -3.6666 -0.1493 15 6 3.0157 -3.7497 -1.0032 16 6 3.2712 -2.9916 -2.1662 17 7 4.4345 -3.3506 -2.6371 18 7 4.9721 -4.3421 -1.8086 19 6 6.2640 -5.0071 -1.9952 20 9 6.9399 -4.4198 -3.0702 21 9 7.0304 -4.8718 -0.8326 22 9 6.0556 -6.3647 -2.2609 23 6 4.0993 -4.5817 -0.8112 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2136 -1.4759 1.5138 26 1 -1.3105 -3.5879 2.0482 27 1 1.4557 -5.7813 -0.1324 28 1 2.6196 -2.2418 -2.5899 29 1 4.2249 -5.2935 -0.0087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242464366.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:39 Heat of formation + Delta-G solvation = -52.091338 kcal Electronic energy + Delta-G solvation = -21474.084002 eV Core-core repulsion = 17562.518022 eV Total energy + Delta-G solvation = -3911.565980 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.47064 -49.12812 -49.10583 -42.17473 -39.95895 -36.02416 -34.21817 -32.88619 -32.01455 -29.89842 -27.81060 -26.77452 -23.92872 -23.38569 -22.49097 -21.46067 -20.07668 -19.93424 -19.47657 -19.31035 -17.38393 -16.65896 -16.31532 -16.12543 -15.97662 -15.93165 -15.55496 -15.50874 -15.43225 -15.22472 -15.20313 -14.65631 -14.36657 -14.23512 -14.00207 -13.72238 -13.18203 -12.98927 -12.72602 -12.15719 -11.98617 -11.66399 -11.25543 -10.95246 -10.33600 -9.87137 -9.67604 -9.05245 -8.65073 -6.49515 0.16527 0.37144 0.84538 1.03367 1.41245 1.51322 1.57225 1.69873 1.86967 2.17841 2.45829 2.79372 2.97064 3.58246 3.79457 3.86027 4.08755 4.33820 4.51706 4.66472 4.76072 5.05927 5.08909 5.28988 5.35970 5.50567 5.55736 5.65916 5.97552 6.22840 6.40060 6.56141 6.83091 6.86184 7.78277 8.22788 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.005983 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.446208 B = 4679.004149 C = 5934.716044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.046 3.954 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.120 3.880 10 C -0.228 4.228 11 C 0.077 3.923 12 N -0.590 5.590 13 C 0.121 3.879 14 C -0.201 4.201 15 C -0.123 4.123 16 C 0.098 3.902 17 N -0.299 5.299 18 N -0.453 5.453 19 C 0.705 3.295 20 F -0.143 7.143 21 F -0.148 7.148 22 F -0.148 7.148 23 C 0.061 3.939 24 H 0.293 0.707 25 H 0.115 0.885 26 H 0.138 0.862 27 H 0.148 0.852 28 H 0.197 0.803 29 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.273 -4.223 -2.313 10.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.173 4.173 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.112 3.888 10 C -0.250 4.250 11 C -0.071 4.071 12 N -0.305 5.305 13 C -0.036 4.036 14 C -0.207 4.207 15 C -0.134 4.134 16 C -0.091 4.091 17 N -0.117 5.117 18 N -0.249 5.249 19 C 0.570 3.430 20 F -0.124 7.124 21 F -0.130 7.130 22 F -0.130 7.130 23 C -0.078 4.078 24 H 0.104 0.896 25 H 0.133 0.867 26 H 0.156 0.844 27 H 0.166 0.834 28 H 0.214 0.786 29 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 9.632 -4.772 -2.992 11.158 hybrid contribution 0.017 1.426 0.431 1.490 sum 9.650 -3.345 -2.561 10.529 Atomic orbital electron populations 1.69787 1.08916 1.31131 1.32997 1.26695 0.95320 1.04180 0.91070 0.85313 0.79184 0.76563 0.79573 1.18581 1.19015 1.18746 1.19649 0.97418 0.91161 1.40501 0.90118 1.18061 0.90761 0.92453 0.87573 1.21906 1.00894 0.98330 1.03881 1.22005 0.98661 0.88512 0.97964 1.67391 1.16335 1.29031 1.17712 1.22516 0.90798 0.96857 0.93446 1.18977 0.99966 0.94381 1.07377 1.19075 0.95938 1.00473 0.97867 1.24483 0.92728 0.97846 0.94052 1.77246 1.12405 1.05504 1.16519 1.49150 1.15898 1.34966 1.24872 1.17125 0.75972 0.75075 0.74806 1.93289 1.79473 1.84155 1.55513 1.93333 1.74933 1.95564 1.49132 1.93333 1.94454 1.31529 1.93657 1.23252 0.88807 1.02181 0.93572 0.89552 0.86710 0.84446 0.83436 0.78639 0.77334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.66 10.91 21.86 0.24 -37.42 15 2 C 0.05 2.08 5.22 85.31 0.45 2.53 15 3 Si 0.97 34.95 29.59 68.60 2.03 36.98 15 4 H -0.26 -9.10 7.11 99.48 0.71 -8.40 15 5 H -0.27 -9.16 7.11 99.48 0.71 -8.45 15 6 H -0.26 -9.59 7.11 99.48 0.71 -8.88 15 7 C -0.46 -21.73 7.95 23.38 0.19 -21.55 15 8 H 0.08 3.79 6.78 -2.91 -0.02 3.77 15 9 C 0.12 5.81 5.62 -20.93 -0.12 5.69 15 10 C -0.23 -11.09 8.72 22.56 0.20 -10.90 15 11 C 0.08 3.48 11.09 84.21 0.93 4.42 15 12 N -0.59 -26.67 10.32 -196.20 -2.02 -28.69 15 13 C 0.12 5.10 10.90 84.99 0.93 6.02 15 14 C -0.20 -8.76 5.84 -19.47 -0.11 -8.87 15 15 C -0.12 -4.66 5.04 -20.08 -0.10 -4.76 15 16 C 0.10 3.66 10.49 85.60 0.90 4.56 15 17 N -0.30 -10.65 12.16 -56.32 -0.68 -11.34 15 18 N -0.45 -14.19 3.86 -360.38 -1.39 -15.58 15 19 C 0.71 18.01 3.97 127.77 0.51 18.52 15 20 F -0.14 -3.76 17.14 44.97 0.77 -2.99 15 21 F -0.15 -3.50 17.39 44.97 0.78 -2.72 15 22 F -0.15 -3.42 17.50 44.97 0.79 -2.63 15 23 C 0.06 1.91 11.34 84.19 0.95 2.86 15 24 H 0.29 12.41 8.29 -92.71 -0.77 11.64 15 25 H 0.12 5.75 6.22 -2.91 -0.02 5.74 15 26 H 0.14 5.49 8.06 -2.91 -0.02 5.47 15 27 H 0.15 5.22 8.06 -2.91 -0.02 5.20 15 28 H 0.20 7.17 8.01 -2.91 -0.02 7.15 15 29 H 0.21 5.12 8.06 -2.91 -0.02 5.09 15 Total: -1.00 -53.98 279.82 6.44 -47.53 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.22 Total: 18.33 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 4.72 Total: -1.48 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -3.86 Total: -93.03 kcal Atomic # 9 Polarization: -10.67 SS G_CDS: 2.34 Total: -8.33 kcal Atomic # 14 Polarization: 34.95 SS G_CDS: 2.03 Total: 36.98 kcal Total: -53.98 6.44 -47.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242464366.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.556 kcal (2) G-P(sol) polarization free energy of solvation -53.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds