Wall clock time and date at job start Tue Mar 31 2020 06:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86802 * 119.99781 * 2 1 4 4 H 1.48490 * 109.47132 * 274.67152 * 3 2 1 5 5 H 1.48498 * 109.47263 * 34.67837 * 3 2 1 6 6 H 1.48505 * 109.46817 * 154.67263 * 3 2 1 7 7 C 1.39929 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00376 * 162.36155 * 7 2 1 9 9 C 1.41437 * 120.00202 * 342.35959 * 7 2 1 10 10 C 1.40818 * 120.60432 * 335.58956 * 9 7 2 11 11 N 1.31486 * 120.65811 * 179.97438 * 10 9 7 12 12 C 1.31952 * 122.11183 * 359.75301 * 11 10 9 13 13 C 1.39650 * 121.15280 * 0.53545 * 12 11 10 14 14 C 1.48498 * 120.40092 * 179.71919 * 13 12 11 15 15 C 1.40845 * 126.21693 * 179.75260 * 14 13 12 16 16 N 1.30676 * 108.09524 * 179.70866 * 15 14 13 17 17 N 1.40013 * 108.52299 * 0.26005 * 16 15 14 18 18 C 1.46496 * 125.89133 * 179.97438 * 17 16 15 19 19 F 1.39904 * 109.47404 * 5.02416 * 18 17 16 20 20 F 1.39901 * 109.47432 * 125.02784 * 18 17 16 21 21 F 1.39904 * 109.47254 * 245.02593 * 18 17 16 22 22 C 1.34822 * 108.20933 * 0.02562 * 17 16 15 23 23 C 1.39122 * 119.19234 * 359.45988 * 13 12 11 24 24 H 0.97001 * 120.00260 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.67068 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.42755 * 180.26944 * 12 11 10 27 27 H 1.07994 * 125.95379 * 359.96994 * 15 14 13 28 28 H 1.07998 * 126.18953 * 179.97438 * 22 17 16 29 29 H 1.07999 * 120.95271 * 180.29085 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3909 2.1035 -1.3953 5 1 1.4926 2.6221 0.7966 6 1 3.5857 1.4137 0.5990 7 6 2.0080 -1.2118 -0.0005 8 1 3.0498 -1.2337 -0.2839 9 6 1.3507 -2.4081 0.3701 10 6 0.2157 -2.3741 1.2029 11 7 -0.3965 -3.4855 1.5477 12 6 0.0130 -4.6694 1.1332 13 6 1.1334 -4.7988 0.3096 14 6 1.5832 -6.1400 -0.1421 15 6 2.6874 -6.4111 -0.9734 16 7 2.7625 -7.7051 -1.1392 17 7 1.7145 -8.3059 -0.4312 18 6 1.4410 -9.7432 -0.3573 19 9 2.4579 -10.4458 -1.0126 20 9 1.3893 -10.1398 0.9833 21 9 0.2144 -10.0167 -0.9721 22 6 1.0000 -7.3332 0.1697 23 6 1.8196 -3.6555 -0.0870 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1558 -1.4257 1.5619 26 1 -0.5251 -5.5543 1.4396 27 1 3.3579 -5.6777 -1.3962 28 1 0.1270 -7.4737 0.7898 29 1 2.6868 -3.7222 -0.7274 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242464624.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:57 Heat of formation + Delta-G solvation = -38.796275 kcal Electronic energy + Delta-G solvation = -20863.095104 eV Core-core repulsion = 16952.105641 eV Total energy + Delta-G solvation = -3910.989463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.54932 -48.22500 -48.17836 -41.22257 -38.25026 -34.15819 -33.08198 -31.64140 -30.70988 -28.44221 -25.84511 -25.57718 -22.56612 -22.28299 -20.95150 -20.29769 -19.15658 -18.89581 -18.48477 -17.25763 -15.94382 -15.31596 -15.16125 -15.08586 -14.89049 -14.60417 -14.58557 -14.40411 -14.33598 -14.29451 -14.09800 -13.48286 -12.89044 -12.81685 -12.41299 -11.63504 -11.52487 -11.29388 -11.12999 -10.83767 -10.75571 -10.21843 -9.99627 -9.53783 -9.45753 -8.19578 -7.92122 -7.26336 -6.98077 -4.57681 1.11656 1.40769 2.19245 2.64662 2.66117 2.99451 3.03054 3.11046 3.39649 3.41884 3.80203 3.89428 4.54114 4.55841 4.84644 5.33979 5.51278 5.59569 5.80056 5.99159 6.24770 6.33003 6.55996 6.65878 6.90594 6.98858 7.18064 7.36529 7.51017 7.64289 7.96559 8.22284 8.59235 8.62765 9.62101 9.98831 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.040764 B = 0.003546 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.707726 B = 7893.574982 C = 8336.958775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.450 4.450 8 H 0.083 0.917 9 C 0.066 3.934 10 C 0.047 3.953 11 N -0.475 5.475 12 C -0.032 4.032 13 C -0.045 4.045 14 C -0.130 4.130 15 C 0.090 3.910 16 N -0.275 5.275 17 N -0.451 5.451 18 C 0.699 3.301 19 F -0.141 7.141 20 F -0.154 7.154 21 F -0.155 7.155 22 C 0.062 3.938 23 C -0.184 4.184 24 H 0.286 0.714 25 H 0.151 0.849 26 H 0.117 0.883 27 H 0.200 0.800 28 H 0.186 0.814 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 -11.696 -0.805 11.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.480 4.480 8 H 0.101 0.899 9 C 0.061 3.939 10 C -0.117 4.117 11 N -0.182 5.182 12 C -0.186 4.186 13 C -0.048 4.048 14 C -0.141 4.141 15 C -0.100 4.100 16 N -0.091 5.091 17 N -0.247 5.247 18 C 0.564 3.436 19 F -0.122 7.122 20 F -0.135 7.135 21 F -0.137 7.137 22 C -0.076 4.076 23 C -0.210 4.210 24 H 0.097 0.903 25 H 0.168 0.832 26 H 0.134 0.866 27 H 0.217 0.783 28 H 0.203 0.797 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.124 -12.723 -0.797 12.924 hybrid contribution 0.522 1.118 -0.279 1.265 sum 2.646 -11.605 -1.075 11.951 Atomic orbital electron populations 1.69763 1.07682 1.29963 1.33761 1.25981 0.94801 1.01691 0.91979 0.86215 0.80713 0.80198 0.79219 1.19424 1.19805 1.18259 1.19535 0.98152 0.90788 1.39484 0.89911 1.18459 0.92802 0.92530 0.90097 1.23079 0.95910 0.95019 0.97694 1.67127 1.30360 0.98714 1.21999 1.21687 0.97831 0.94745 1.04379 1.18569 0.97461 0.89026 0.99752 1.19277 0.97950 0.93254 1.03570 1.24405 0.97279 0.92384 0.95956 1.77425 1.06015 1.08972 1.16737 1.49158 1.26996 1.03631 1.44942 1.17263 0.74746 0.76999 0.74640 1.93296 1.59689 1.78161 1.81081 1.93322 1.96178 1.90263 1.33778 1.93328 1.44138 1.93221 1.82986 1.22521 0.98688 0.86884 0.99529 1.21252 1.02920 0.91706 1.05120 0.90282 0.83191 0.86590 0.78316 0.79731 0.87666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.11 10.96 55.55 0.61 -18.50 15 2 C 0.07 1.74 5.15 -17.35 -0.09 1.65 15 3 Si 0.91 17.32 29.59 -169.99 -5.03 12.29 15 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 7 C -0.45 -10.98 9.08 -37.73 -0.34 -11.32 15 8 H 0.08 1.91 7.90 -52.49 -0.41 1.50 15 9 C 0.07 1.64 5.58 -106.70 -0.60 1.04 15 10 C 0.05 1.21 9.89 -16.72 -0.17 1.04 15 11 N -0.47 -11.65 10.32 -12.28 -0.13 -11.77 15 12 C -0.03 -0.69 10.73 -16.97 -0.18 -0.88 15 13 C -0.04 -0.92 5.89 -104.81 -0.62 -1.54 15 14 C -0.13 -2.24 6.05 -105.34 -0.64 -2.87 15 15 C 0.09 1.41 11.44 -17.06 -0.20 1.21 15 16 N -0.27 -4.36 12.20 30.80 0.38 -3.99 15 17 N -0.45 -6.65 3.87 -65.65 -0.25 -6.90 15 18 C 0.70 8.62 3.98 59.84 0.24 8.86 15 19 F -0.14 -1.76 17.15 2.25 0.04 -1.72 15 20 F -0.15 -1.76 17.39 2.25 0.04 -1.72 15 21 F -0.15 -1.81 17.50 2.25 0.04 -1.77 15 22 C 0.06 0.92 10.77 -16.89 -0.18 0.74 15 23 C -0.18 -4.11 9.46 -38.25 -0.36 -4.47 15 24 H 0.29 6.29 8.30 -40.82 -0.34 5.95 15 25 H 0.15 3.92 6.15 -52.49 -0.32 3.60 15 26 H 0.12 2.16 7.01 -52.49 -0.37 1.79 15 27 H 0.20 2.60 7.40 -52.49 -0.39 2.21 15 28 H 0.19 2.27 7.29 -52.49 -0.38 1.88 15 29 H 0.11 2.09 7.16 -52.49 -0.38 1.72 15 LS Contribution 279.53 15.07 4.21 4.21 Total: -1.00 -26.98 279.53 -4.61 -31.59 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -1.39 Total: 4.81 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.13 Total: -6.53 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.60 Total: -41.16 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.12 Total: -5.21 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -26.98 -4.61 -31.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242464624.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.204 kcal (2) G-P(sol) polarization free energy of solvation -26.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds