Wall clock time and date at job start Tue Mar 31 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86800 * 120.00290 * 2 1 4 4 H 1.48498 * 109.47444 * 270.00271 * 3 2 1 5 5 H 1.48504 * 109.46734 * 30.00521 * 3 2 1 6 6 H 1.48499 * 109.46967 * 150.00235 * 3 2 1 7 7 C 1.40030 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.41437 * 119.99830 * 359.97438 * 7 2 1 10 10 C 1.40430 * 119.78160 * 180.02562 * 9 7 2 11 11 C 1.39333 * 118.84126 * 180.02562 * 10 9 7 12 12 C 1.48388 * 120.81988 * 179.97438 * 11 10 9 13 13 C 1.40882 * 126.23776 * 359.95871 * 12 11 10 14 14 N 1.30649 * 108.08296 * 180.02562 * 13 12 11 15 15 N 1.40007 * 108.53992 * 359.97438 * 14 13 12 16 16 C 1.46500 * 125.88252 * 180.02562 * 15 14 13 17 17 F 1.39897 * 109.47222 * 269.99805 * 16 15 14 18 18 F 1.39903 * 109.46937 * 29.99973 * 16 15 14 19 19 F 1.39905 * 109.47335 * 149.99894 * 16 15 14 20 20 C 1.34745 * 108.23815 * 0.02562 * 15 14 13 21 21 C 1.40035 * 118.35527 * 0.25133 * 11 10 9 22 22 C 1.38457 * 119.42678 * 359.48207 * 21 11 10 23 23 N 1.31506 * 121.14854 * 0.53132 * 22 21 11 24 24 H 0.97006 * 120.00023 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.57854 * 359.97438 * 10 9 7 26 26 H 1.08005 * 125.96257 * 0.02909 * 13 12 11 27 27 H 1.07994 * 126.19422 * 179.73989 * 20 15 14 28 28 H 1.08001 * 120.28793 * 179.74509 * 21 11 10 29 29 H 1.08011 * 119.42637 * 180.29745 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0465 -1.4000 5 1 1.4389 2.6526 0.7002 6 1 3.5390 1.4400 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0874 -1.2128 -0.0001 9 6 1.3003 -2.4376 -0.0005 10 6 2.0070 -3.6511 -0.0005 11 6 1.2906 -4.8461 -0.0011 12 6 1.9926 -6.1534 -0.0017 13 6 3.3877 -6.3495 -0.0026 14 7 3.6165 -7.6358 -0.0034 15 7 2.3875 -8.3065 -0.0025 16 6 2.2024 -9.7597 -0.0025 17 9 2.1423 -10.2222 -1.3214 18 9 3.2771 -10.3667 0.6561 19 9 1.0108 -10.0781 0.6580 20 6 1.4043 -7.3851 -0.0016 21 6 -0.1083 -4.7829 -0.0070 22 6 -0.7335 -3.5475 -0.0012 23 7 -0.0364 -2.4324 -0.0007 24 1 -0.4850 0.8401 0.0004 25 1 3.0871 -3.6579 -0.0010 26 1 4.1375 -5.5721 -0.0025 27 1 0.3430 -7.5850 -0.0048 28 1 -0.6946 -5.6899 -0.0118 29 1 -1.8125 -3.4988 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242465302.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:33 Heat of formation + Delta-G solvation = -27.383947 kcal Electronic energy + Delta-G solvation = -20855.365369 eV Core-core repulsion = 16944.870782 eV Total energy + Delta-G solvation = -3910.494587 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.58181 -48.28668 -48.17508 -41.23945 -38.07149 -33.86422 -32.97745 -31.69253 -30.07609 -28.77001 -26.07553 -25.50841 -22.58574 -22.18044 -20.96149 -20.22729 -19.17516 -18.98247 -18.56118 -17.13948 -15.83519 -15.30742 -15.17734 -14.98441 -14.62914 -14.60338 -14.40392 -14.31892 -14.29528 -14.23411 -14.18697 -13.53422 -12.86506 -12.63452 -12.27584 -12.26865 -11.27341 -11.24727 -10.90854 -10.75946 -10.45645 -10.05706 -9.91762 -9.73687 -9.22594 -7.72405 -7.62826 -7.55255 -6.45074 -4.58359 1.09115 1.40492 2.26267 2.62038 2.71431 3.06873 3.09252 3.13719 3.35727 3.56949 3.88371 3.91180 4.54167 4.72824 4.83334 5.32903 5.49932 5.79439 5.86876 6.03598 6.26800 6.33523 6.56567 6.66839 6.83270 7.07225 7.25802 7.35766 7.46368 7.62566 7.93701 8.17261 8.59981 8.85620 10.06264 10.26989 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.040636 B = 0.003544 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.886790 B = 7899.036510 C = 8413.430508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.430 4.430 8 H 0.084 0.916 9 C 0.256 3.744 10 C -0.256 4.256 11 C 0.036 3.964 12 C -0.138 4.138 13 C 0.093 3.907 14 N -0.276 5.276 15 N -0.451 5.451 16 C 0.700 3.300 17 F -0.156 7.156 18 F -0.144 7.144 19 F -0.150 7.150 20 C 0.067 3.933 21 C -0.310 4.310 22 C 0.128 3.872 23 N -0.485 5.485 24 H 0.273 0.727 25 H 0.102 0.898 26 H 0.201 0.799 27 H 0.186 0.814 28 H 0.093 0.907 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 -12.866 0.055 13.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.157 4.157 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.461 4.461 8 H 0.103 0.897 9 C 0.132 3.868 10 C -0.280 4.280 11 C 0.028 3.972 12 C -0.147 4.147 13 C -0.097 4.097 14 N -0.092 5.092 15 N -0.247 5.247 16 C 0.564 3.436 17 F -0.138 7.138 18 F -0.126 7.126 19 F -0.132 7.132 20 C -0.071 4.071 21 C -0.334 4.334 22 C -0.037 4.037 23 N -0.197 5.197 24 H 0.084 0.916 25 H 0.120 0.880 26 H 0.218 0.782 27 H 0.203 0.797 28 H 0.111 0.889 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.540 -13.026 0.059 13.272 hybrid contribution 0.050 0.190 -0.013 0.197 sum 2.590 -12.836 0.046 13.095 Atomic orbital electron populations 1.70130 1.07198 1.27845 1.28373 1.26075 0.94915 1.01120 0.93600 0.86334 0.80476 0.80818 0.79258 1.19389 1.20111 1.18506 1.19635 0.94289 0.89354 1.42842 0.89741 1.18526 0.88315 0.91649 0.88301 1.21714 0.98483 0.92355 1.15401 1.17814 0.92612 0.88662 0.98070 1.19351 0.92293 0.93069 1.10030 1.24429 0.96743 0.92971 0.95590 1.77409 1.00233 1.06812 1.24790 1.49158 1.07487 1.03337 1.64707 1.17251 0.74377 0.77011 0.74923 1.93325 1.96018 1.88446 1.35989 1.93301 1.55731 1.82762 1.80770 1.93308 1.46750 1.92145 1.80948 1.22567 0.95034 0.87793 1.01736 1.21205 0.93118 0.97959 1.21072 1.22430 0.98816 0.88575 0.93920 1.68742 1.07279 1.26791 1.16924 0.91557 0.88022 0.78210 0.79669 0.88911 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.54 11.46 55.55 0.64 -17.90 15 2 C 0.07 1.69 5.50 -17.35 -0.10 1.59 15 3 Si 0.91 18.02 29.56 -169.99 -5.02 13.00 15 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 15 6 H -0.26 -5.09 7.11 56.52 0.40 -4.68 15 7 C -0.43 -11.04 9.14 -37.69 -0.34 -11.39 15 8 H 0.08 2.01 7.85 -52.49 -0.41 1.59 15 9 C 0.26 6.70 6.55 -85.02 -0.56 6.14 15 10 C -0.26 -5.85 9.38 -38.35 -0.36 -6.21 15 11 C 0.04 0.74 5.91 -104.64 -0.62 0.12 15 12 C -0.14 -2.39 6.05 -105.34 -0.64 -3.03 15 13 C 0.09 1.47 11.46 -17.05 -0.20 1.27 15 14 N -0.28 -4.40 12.36 30.81 0.38 -4.02 15 15 N -0.45 -6.65 3.89 -65.65 -0.26 -6.90 15 16 C 0.70 8.60 4.10 59.85 0.25 8.84 15 17 F -0.16 -1.87 17.51 2.25 0.04 -1.83 15 18 F -0.14 -1.79 17.33 2.25 0.04 -1.75 15 19 F -0.15 -1.64 16.99 2.25 0.04 -1.61 15 20 C 0.07 1.01 10.46 -16.90 -0.18 0.83 15 21 C -0.31 -6.44 9.66 -38.83 -0.38 -6.82 15 22 C 0.13 2.95 11.17 -17.61 -0.20 2.75 15 23 N -0.48 -12.87 7.85 -11.21 -0.09 -12.96 15 24 H 0.27 6.42 8.29 -40.82 -0.34 6.08 15 25 H 0.10 2.08 7.19 -52.48 -0.38 1.70 15 26 H 0.20 2.65 7.43 -52.48 -0.39 2.26 15 27 H 0.19 2.29 7.36 -52.49 -0.39 1.91 15 28 H 0.09 1.63 7.14 -52.49 -0.37 1.26 15 29 H 0.12 2.42 8.06 -52.48 -0.42 2.00 15 LS Contribution 280.96 15.07 4.23 4.23 Total: -1.00 -28.56 280.96 -4.81 -33.37 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -1.50 Total: 2.24 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -3.31 Total: -5.88 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.67 Total: -41.78 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.12 Total: -5.18 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.02 Total: 13.00 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.56 -4.81 -33.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242465302.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.988 kcal (2) G-P(sol) polarization free energy of solvation -28.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds