Wall clock time and date at job start Tue Mar 31 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86800 * 120.00290 * 2 1 4 4 H 1.48498 * 109.47444 * 270.00271 * 3 2 1 5 5 H 1.48504 * 109.46734 * 30.00521 * 3 2 1 6 6 H 1.48499 * 109.46967 * 150.00235 * 3 2 1 7 7 C 1.40030 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.41437 * 119.99830 * 359.97438 * 7 2 1 10 10 C 1.40430 * 119.78160 * 180.02562 * 9 7 2 11 11 C 1.39333 * 118.84126 * 180.02562 * 10 9 7 12 12 C 1.48388 * 120.81988 * 179.97438 * 11 10 9 13 13 C 1.40882 * 126.23776 * 359.95871 * 12 11 10 14 14 N 1.30649 * 108.08296 * 180.02562 * 13 12 11 15 15 N 1.40007 * 108.53992 * 359.97438 * 14 13 12 16 16 C 1.46500 * 125.88252 * 180.02562 * 15 14 13 17 17 F 1.39897 * 109.47222 * 269.99805 * 16 15 14 18 18 F 1.39903 * 109.46937 * 29.99973 * 16 15 14 19 19 F 1.39905 * 109.47335 * 149.99894 * 16 15 14 20 20 C 1.34745 * 108.23815 * 0.02562 * 15 14 13 21 21 C 1.40035 * 118.35527 * 0.25133 * 11 10 9 22 22 C 1.38457 * 119.42678 * 359.48207 * 21 11 10 23 23 N 1.31506 * 121.14854 * 0.53132 * 22 21 11 24 24 H 0.97006 * 120.00023 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.57854 * 359.97438 * 10 9 7 26 26 H 1.08005 * 125.96257 * 0.02909 * 13 12 11 27 27 H 1.07994 * 126.19422 * 179.73989 * 20 15 14 28 28 H 1.08001 * 120.28793 * 179.74509 * 21 11 10 29 29 H 1.08011 * 119.42637 * 180.29745 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0465 -1.4000 5 1 1.4389 2.6526 0.7002 6 1 3.5390 1.4400 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0874 -1.2128 -0.0001 9 6 1.3003 -2.4376 -0.0005 10 6 2.0070 -3.6511 -0.0005 11 6 1.2906 -4.8461 -0.0011 12 6 1.9926 -6.1534 -0.0017 13 6 3.3877 -6.3495 -0.0026 14 7 3.6165 -7.6358 -0.0034 15 7 2.3875 -8.3065 -0.0025 16 6 2.2024 -9.7597 -0.0025 17 9 2.1423 -10.2222 -1.3214 18 9 3.2771 -10.3667 0.6561 19 9 1.0108 -10.0781 0.6580 20 6 1.4043 -7.3851 -0.0016 21 6 -0.1083 -4.7829 -0.0070 22 6 -0.7335 -3.5475 -0.0012 23 7 -0.0364 -2.4324 -0.0007 24 1 -0.4850 0.8401 0.0004 25 1 3.0871 -3.6579 -0.0010 26 1 4.1375 -5.5721 -0.0025 27 1 0.3430 -7.5850 -0.0048 28 1 -0.6946 -5.6899 -0.0118 29 1 -1.8125 -3.4988 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242465302.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:32 Heat of formation + Delta-G solvation = -43.809974 kcal Electronic energy + Delta-G solvation = -20856.077655 eV Core-core repulsion = 16944.870782 eV Total energy + Delta-G solvation = -3911.206873 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.54572 -49.22772 -49.15273 -42.47442 -39.81924 -35.58774 -34.36782 -33.11434 -31.85854 -30.18859 -27.69981 -26.82893 -24.10912 -23.62322 -22.32774 -21.69620 -20.18468 -20.13715 -19.68619 -18.75285 -17.42443 -16.73490 -16.21954 -16.02263 -15.93456 -15.82848 -15.75088 -15.67337 -15.57162 -15.29318 -15.28383 -14.78310 -14.26603 -14.10525 -14.06459 -13.83391 -12.88284 -12.84787 -12.58022 -12.25860 -11.98901 -11.61363 -11.46596 -11.14184 -10.88111 -9.52982 -9.43538 -9.08418 -8.24062 -6.46236 0.01511 0.15190 0.84376 0.96856 1.44229 1.54391 1.58106 1.61876 2.05931 2.26215 2.33521 2.88389 2.94190 3.40288 3.65197 4.03475 4.05692 4.16706 4.34383 4.47233 4.75770 4.92283 5.09249 5.12572 5.30035 5.31062 5.54875 5.71601 5.89950 6.12672 6.23928 6.35225 6.79252 7.01509 8.26905 8.50541 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.040636 B = 0.003544 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.886790 B = 7899.036510 C = 8413.430508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.024 3.976 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.470 4.470 8 H 0.091 0.909 9 C 0.225 3.775 10 C -0.274 4.274 11 C 0.044 3.956 12 C -0.172 4.172 13 C 0.097 3.903 14 N -0.290 5.290 15 N -0.453 5.453 16 C 0.706 3.294 17 F -0.151 7.151 18 F -0.144 7.144 19 F -0.138 7.138 20 C 0.095 3.905 21 C -0.300 4.300 22 C 0.105 3.895 23 N -0.526 5.526 24 H 0.277 0.723 25 H 0.116 0.884 26 H 0.217 0.783 27 H 0.216 0.784 28 H 0.131 0.869 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -14.445 0.072 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.198 4.198 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.501 4.501 8 H 0.109 0.891 9 C 0.101 3.899 10 C -0.297 4.297 11 C 0.037 3.963 12 C -0.182 4.182 13 C -0.093 4.093 14 N -0.107 5.107 15 N -0.248 5.248 16 C 0.571 3.429 17 F -0.133 7.133 18 F -0.125 7.125 19 F -0.119 7.119 20 C -0.045 4.045 21 C -0.323 4.323 22 C -0.059 4.059 23 N -0.240 5.240 24 H 0.088 0.912 25 H 0.134 0.866 26 H 0.233 0.767 27 H 0.233 0.767 28 H 0.149 0.851 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.858 -14.656 0.077 14.933 hybrid contribution -0.105 0.383 -0.020 0.398 sum 2.753 -14.274 0.056 14.537 Atomic orbital electron populations 1.70237 1.08847 1.28918 1.30080 1.26967 0.95696 1.04508 0.92585 0.85183 0.79072 0.75952 0.79342 1.18888 1.19536 1.17801 1.19993 0.94827 0.90376 1.44927 0.89140 1.18954 0.88775 0.93149 0.89062 1.21877 0.99397 0.92332 1.16112 1.18037 0.92811 0.89639 0.95818 1.19158 0.93078 0.92378 1.13624 1.24688 0.96644 0.93347 0.94666 1.77405 1.00989 1.06807 1.25481 1.49369 1.07183 1.04428 1.63855 1.17125 0.74730 0.75938 0.75094 1.93340 1.96020 1.88191 1.35763 1.93310 1.55879 1.82536 1.80790 1.93342 1.45983 1.91875 1.80726 1.22960 0.96247 0.87035 0.98264 1.21591 0.93583 0.98530 1.18576 1.22879 0.99844 0.88964 0.94166 1.68662 1.07972 1.28818 1.18551 0.91217 0.86589 0.76679 0.76721 0.85104 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -40.77 11.46 21.84 0.25 -40.52 15 2 C 0.02 1.20 5.50 85.29 0.47 1.67 15 3 Si 0.98 37.66 29.56 68.60 2.03 39.69 15 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 15 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 15 6 H -0.25 -9.32 7.11 99.48 0.71 -8.61 15 7 C -0.47 -24.93 9.14 23.49 0.21 -24.71 15 8 H 0.09 4.44 7.85 -2.91 -0.02 4.41 15 9 C 0.23 12.13 6.55 40.19 0.26 12.39 15 10 C -0.27 -12.61 9.38 23.07 0.22 -12.40 15 11 C 0.04 1.79 5.91 -19.87 -0.12 1.67 15 12 C -0.17 -5.58 6.05 -20.33 -0.12 -5.70 15 13 C 0.10 2.86 11.46 85.52 0.98 3.84 15 14 N -0.29 -8.57 12.36 -56.44 -0.70 -9.27 15 15 N -0.45 -11.95 3.89 -361.60 -1.40 -13.35 15 16 C 0.71 15.12 4.10 127.77 0.52 15.64 15 17 F -0.15 -3.17 17.51 44.97 0.79 -2.38 15 18 F -0.14 -3.19 17.33 44.97 0.78 -2.41 15 19 F -0.14 -2.53 16.99 44.97 0.76 -1.76 15 20 C 0.09 2.51 10.46 83.84 0.88 3.38 15 21 C -0.30 -11.91 9.66 22.76 0.22 -11.69 15 22 C 0.11 4.84 11.17 84.79 0.95 5.79 15 23 N -0.53 -28.74 7.85 -189.39 -1.49 -30.23 15 24 H 0.28 13.49 8.29 -92.70 -0.77 12.72 15 25 H 0.12 4.78 7.19 -2.91 -0.02 4.76 15 26 H 0.22 5.40 7.43 -2.91 -0.02 5.38 15 27 H 0.22 4.25 7.36 -2.91 -0.02 4.23 15 28 H 0.13 4.10 7.14 -2.91 -0.02 4.08 15 29 H 0.14 5.55 8.06 -2.90 -0.02 5.53 15 Total: -1.00 -62.92 280.96 6.71 -56.21 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.22 Total: 14.14 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 4.47 Total: -10.12 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -3.34 Total: -93.36 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 2.33 Total: -6.56 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -62.92 6.71 -56.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242465302.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.401 kcal (2) G-P(sol) polarization free energy of solvation -62.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds