Wall clock time and date at job start Tue Mar 31 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39695 * 120.08731 * 9.64881 * 3 2 1 5 5 C 1.38131 * 120.07360 * 180.02562 * 4 3 2 6 6 Cl 1.73602 * 119.87148 * 179.97438 * 5 4 3 7 7 C 1.38280 * 120.25230 * 359.68568 * 5 4 3 8 8 C 1.39390 * 120.17134 * 0.59666 * 7 5 4 9 9 C 1.48431 * 120.03792 * 179.69765 * 8 7 5 10 10 C 1.39716 * 119.99662 * 179.70659 * 9 8 7 11 11 C 1.38392 * 120.37887 * 180.02562 * 10 9 8 12 12 C 1.37713 * 120.37904 * 359.97438 * 11 10 9 13 13 C 1.40749 * 119.98827 * 359.97438 * 12 11 10 14 14 C 1.41422 * 120.18872 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00182 * 204.49049 * 14 13 12 16 16 C 1.39934 * 120.00226 * 24.49254 * 14 13 12 17 17 N 1.30834 * 119.99697 * 17.90510 * 16 14 13 18 18 Si 1.86796 * 120.00321 * 197.90229 * 16 14 13 19 19 H 1.48499 * 109.46876 * 60.00162 * 18 16 14 20 20 H 1.48503 * 109.47152 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47272 * 300.00069 * 18 16 14 22 22 C 1.38720 * 119.99644 * 359.72396 * 9 8 7 23 23 C 1.39085 * 119.91845 * 359.42396 * 8 7 5 24 24 H 1.07995 * 119.96524 * 0.03018 * 4 3 2 25 25 H 1.07999 * 119.91379 * 180.31877 * 7 5 4 26 26 H 1.08005 * 119.80814 * 0.04132 * 10 9 8 27 27 H 1.07998 * 119.81255 * 180.02562 * 11 10 9 28 28 H 1.08001 * 120.00897 * 180.02562 * 12 11 10 29 29 H 0.96999 * 119.99944 * 179.97438 * 17 16 14 30 30 H 1.07999 * 120.18859 * 359.70743 * 22 9 8 31 31 H 1.08006 * 120.12038 * 180.29493 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -1.1907 -0.2026 5 6 4.6501 -1.1898 -0.2020 6 17 5.5158 -2.6734 -0.4536 7 6 5.3460 -0.0108 -0.0077 8 6 4.6572 1.1829 0.2013 9 6 5.4072 2.4457 0.4162 10 6 4.7159 3.6427 0.6195 11 6 5.4072 4.8247 0.8201 12 6 6.7843 4.8344 0.8222 13 6 7.4965 3.6374 0.6200 14 6 8.9107 3.6424 0.6219 15 1 9.4542 2.8698 0.0982 16 6 9.6060 4.6483 1.3023 17 7 8.9956 5.3663 2.2098 18 14 11.4055 4.9659 0.9149 19 1 11.5456 5.3378 -0.5159 20 1 11.9067 6.0752 1.7655 21 1 12.1947 3.7376 1.1867 22 6 6.7944 2.4372 0.4149 23 6 3.2664 1.1902 0.2025 24 1 2.7301 -2.1134 -0.3599 25 1 6.4260 -0.0155 -0.0134 26 1 3.6359 3.6455 0.6203 27 1 4.8636 5.7447 0.9768 28 1 7.3177 5.7602 0.9798 29 1 9.4776 6.0633 2.6817 30 1 7.3317 1.5129 0.2624 31 1 2.7294 2.1141 0.3593 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242567037.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:47 Heat of formation + Delta-G solvation = 47.143786 kcal Electronic energy + Delta-G solvation = -17721.941105 eV Core-core repulsion = 14764.951437 eV Total energy + Delta-G solvation = -2956.989668 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.86069 -39.10733 -37.81409 -37.24747 -35.60874 -33.39102 -32.41030 -31.56316 -29.63767 -27.25695 -25.20006 -24.32430 -22.43463 -21.93550 -19.98959 -18.53120 -17.83283 -17.11077 -16.75278 -16.30967 -16.05691 -15.35679 -15.31629 -14.92378 -14.54543 -14.28168 -14.18547 -14.05611 -13.89119 -13.52474 -13.19707 -12.98562 -12.80535 -12.59405 -12.45409 -12.20890 -12.09734 -11.98836 -11.53925 -11.20809 -11.03529 -10.43527 -9.87644 -9.38585 -8.78403 -8.60941 -6.32213 -0.43022 -0.12760 1.00297 1.02031 1.13336 1.41455 1.51295 1.55314 1.56418 1.93142 2.23119 2.65278 2.70968 2.89991 3.62625 3.80166 3.92464 3.96165 4.14235 4.28150 4.52174 4.56388 4.72300 4.94635 5.05590 5.09073 5.13102 5.16358 5.31552 5.50774 5.55140 5.70932 5.99505 6.10098 6.17326 6.34078 6.37838 6.70623 6.96325 7.03467 8.35515 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.019580 B = 0.004231 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.671595 B = 6616.231998 C = 7964.889533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.285 3.715 3 C -0.013 4.013 4 C -0.060 4.060 5 C -0.033 4.033 6 Cl -0.054 7.054 7 C -0.080 4.080 8 C -0.018 4.018 9 C -0.041 4.041 10 C -0.217 4.217 11 C -0.111 4.111 12 C -0.182 4.182 13 C 0.078 3.922 14 C -0.501 4.501 15 H 0.078 0.922 16 C 0.038 3.962 17 N -0.826 5.826 18 Si 0.977 3.023 19 H -0.262 1.262 20 H -0.270 1.270 21 H -0.259 1.259 22 C -0.215 4.215 23 C -0.058 4.058 24 H 0.167 0.833 25 H 0.140 0.860 26 H 0.127 0.873 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.287 0.713 30 H 0.108 0.892 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.191 -9.593 -3.617 11.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.030 4.030 3 C -0.016 4.016 4 C -0.081 4.081 5 C -0.059 4.059 6 Cl -0.025 7.025 7 C -0.099 4.099 8 C -0.018 4.018 9 C -0.041 4.041 10 C -0.236 4.236 11 C -0.129 4.129 12 C -0.202 4.202 13 C 0.075 3.925 14 C -0.531 4.531 15 H 0.096 0.904 16 C -0.177 4.177 17 N -0.452 5.452 18 Si 0.798 3.202 19 H -0.186 1.186 20 H -0.195 1.195 21 H -0.184 1.184 22 C -0.234 4.234 23 C -0.078 4.078 24 H 0.184 0.816 25 H 0.158 0.842 26 H 0.145 0.855 27 H 0.131 0.869 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.844 -9.551 -3.454 12.247 hybrid contribution 1.535 0.432 0.104 1.598 sum -5.310 -9.119 -3.351 11.071 Atomic orbital electron populations 1.81274 1.12750 1.08296 1.10057 1.25432 0.92173 0.92782 0.92613 1.15539 0.83810 0.94448 1.07828 1.21147 0.91628 0.98193 0.97133 1.20509 0.92187 0.87877 1.05373 1.98387 1.76586 1.32431 1.95081 1.21494 1.01557 0.90271 0.96564 1.18687 0.92546 0.92332 0.98229 1.18424 0.92526 0.91787 1.01336 1.20815 0.98845 0.91978 1.11967 1.20923 0.94065 0.97835 1.00078 1.21425 0.93647 0.98175 1.06957 1.17875 0.93917 0.91434 0.89232 1.19811 0.92020 1.10891 1.30329 0.90408 1.26678 1.05047 0.93817 0.92161 1.69864 1.40622 1.17671 1.17049 0.85325 0.76582 0.78910 0.79380 1.18595 1.19497 1.18357 1.21263 0.93017 0.96967 1.12193 1.21449 0.92911 0.97801 0.95682 0.81596 0.84183 0.85529 0.86903 0.88216 0.90221 0.87396 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.99 18.54 19.00 0.35 -11.63 16 2 C 0.28 6.48 15.32 88.33 1.35 7.83 16 3 C -0.01 -0.26 5.73 -21.39 -0.12 -0.39 16 4 C -0.06 -1.13 9.52 22.60 0.22 -0.92 16 5 C -0.03 -0.72 6.31 22.25 0.14 -0.58 16 6 Cl -0.05 -1.08 28.94 -2.72 -0.08 -1.16 16 7 C -0.08 -2.14 9.20 22.56 0.21 -1.93 16 8 C -0.02 -0.52 5.87 -20.08 -0.12 -0.64 16 9 C -0.04 -1.56 5.87 -20.09 -0.12 -1.68 16 10 C -0.22 -8.30 9.43 22.66 0.21 -8.08 16 11 C -0.11 -4.74 10.01 22.18 0.22 -4.52 16 12 C -0.18 -9.11 8.69 22.76 0.20 -8.91 16 13 C 0.08 3.95 5.57 -21.32 -0.12 3.83 16 14 C -0.50 -25.79 9.05 23.47 0.21 -25.58 16 15 H 0.08 3.83 7.91 -2.91 -0.02 3.81 16 16 C 0.04 1.84 5.14 85.25 0.44 2.28 16 17 N -0.83 -41.94 10.96 21.82 0.24 -41.70 16 18 Si 0.98 36.95 29.60 68.60 2.03 38.98 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 21 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 22 C -0.22 -9.55 9.17 22.95 0.21 -9.34 16 23 C -0.06 -1.42 9.13 22.76 0.21 -1.22 16 24 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 25 H 0.14 3.90 6.18 -2.91 -0.02 3.88 16 26 H 0.13 3.91 6.18 -2.91 -0.02 3.89 16 27 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 28 H 0.10 5.27 6.15 -2.91 -0.02 5.26 16 29 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 30 H 0.11 4.43 6.18 -2.91 -0.02 4.41 16 31 H 0.15 3.38 6.18 -2.91 -0.02 3.36 16 Total: -1.00 -55.53 296.54 6.88 -48.65 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.19 Total: 16.69 kcal Atomic # 6 Polarization: -52.98 SS G_CDS: 3.14 Total: -49.84 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.59 Total: -53.33 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -55.53 6.88 -48.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242567037.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.795 kcal (2) G-P(sol) polarization free energy of solvation -55.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds