Wall clock time and date at job start Tue Mar 31 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39755 * 120.07658 * 29.50089 * 3 2 1 5 5 C 1.38198 * 120.12345 * 180.02562 * 4 3 2 6 6 Cl 1.73595 * 119.85866 * 179.97438 * 5 4 3 7 7 C 1.38197 * 120.27914 * 359.69437 * 5 4 3 8 8 C 1.39657 * 120.14371 * 0.55642 * 7 5 4 9 9 C 1.48009 * 120.05848 * 179.74558 * 8 7 5 10 10 C 1.39933 * 119.87861 * 179.97438 * 9 8 7 11 11 C 1.36256 * 120.11971 * 180.23439 * 10 9 8 12 12 C 1.40924 * 119.87924 * 359.49401 * 11 10 9 13 13 C 1.41032 * 120.11896 * 180.27971 * 12 11 10 14 14 H 1.07997 * 119.99775 * 335.02238 * 13 12 11 15 15 C 1.40011 * 120.00050 * 155.02827 * 13 12 11 16 16 N 1.30794 * 120.00020 * 342.13176 * 15 13 12 17 17 Si 1.86801 * 120.00004 * 162.13903 * 15 13 12 18 18 H 1.48495 * 109.47301 * 94.65116 * 17 15 13 19 19 H 1.48502 * 109.46906 * 214.65276 * 17 15 13 20 20 H 1.48503 * 109.47139 * 334.64734 * 17 15 13 21 21 C 1.40925 * 119.76124 * 0.25435 * 12 11 10 22 22 C 1.36251 * 119.87991 * 0.02562 * 21 12 11 23 23 C 1.39349 * 120.07285 * 209.51929 * 3 2 1 24 24 H 1.07995 * 119.93596 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.92499 * 180.27867 * 7 5 4 26 26 H 1.08003 * 119.93757 * 359.97438 * 10 9 8 27 27 H 1.08002 * 120.06042 * 179.77145 * 11 10 9 28 28 H 0.96997 * 120.00366 * 179.97438 * 16 15 13 29 29 H 1.07999 * 120.06094 * 180.02562 * 21 12 11 30 30 H 1.08005 * 119.94168 * 179.97438 * 22 21 12 31 31 H 1.08006 * 120.13456 * 359.95440 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 -1.0516 -0.5955 5 6 4.6508 -1.0523 -0.5956 6 17 5.5145 -2.3631 -1.3368 7 6 5.3482 -0.0109 -0.0133 8 6 4.6594 1.0438 0.5897 9 6 5.4082 2.1554 1.2177 10 6 4.7142 3.2106 1.8204 11 6 5.3985 4.2387 2.3958 12 6 6.8078 4.2329 2.3927 13 6 7.5212 5.2916 2.9921 14 1 7.0630 6.2647 3.0890 15 6 8.8234 5.0810 3.4613 16 7 9.2543 3.8640 3.6707 17 14 9.9454 6.5383 3.7883 18 1 9.8616 6.9155 5.2221 19 1 11.3448 6.1703 3.4542 20 1 9.5219 7.6874 2.9485 21 6 7.5015 3.1651 1.7890 22 6 6.8074 2.1448 1.2114 23 6 3.2658 1.0503 0.5942 24 1 2.7295 -1.8658 -1.0565 25 1 6.4282 -0.0150 -0.0206 26 1 3.6342 3.2121 1.8257 27 1 4.8619 5.0545 2.8574 28 1 10.1565 3.7180 3.9954 29 1 8.5815 3.1555 1.7842 30 1 7.3381 1.3261 0.7481 31 1 2.7288 1.8661 1.0554 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242569154.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:55 Heat of formation + Delta-G solvation = 45.940759 kcal Electronic energy + Delta-G solvation = -17654.321618 eV Core-core repulsion = 14697.279783 eV Total energy + Delta-G solvation = -2957.041836 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.75332 -39.17589 -37.78345 -37.22277 -35.71644 -33.30812 -32.32050 -31.26620 -30.39810 -27.06738 -25.20940 -24.06596 -22.39305 -21.97368 -19.59227 -19.32838 -17.63967 -17.10344 -16.68133 -16.34044 -15.87429 -15.33608 -15.26112 -14.90676 -14.48010 -14.35440 -14.13596 -13.94410 -13.88049 -13.63018 -13.25856 -12.84731 -12.82627 -12.72131 -12.42965 -12.25934 -12.13836 -11.89011 -11.55515 -11.18758 -11.09423 -10.31582 -9.81636 -9.46212 -8.88670 -8.68289 -6.33160 -0.34904 -0.03644 1.01080 1.05148 1.22808 1.40352 1.47820 1.55114 1.58497 1.94550 2.18873 2.62182 2.76297 2.95029 3.78561 3.79041 4.00474 4.03812 4.23459 4.33175 4.46822 4.63416 4.74536 5.01895 5.07052 5.11693 5.15452 5.18944 5.35810 5.52341 5.59859 5.69525 6.00907 6.08214 6.21644 6.32473 6.36118 6.64544 6.86615 6.98819 8.23218 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.003808 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.123041 B = 7350.993223 C = 8496.484828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.285 3.715 3 C -0.006 4.006 4 C -0.084 4.084 5 C -0.024 4.024 6 Cl -0.058 7.058 7 C -0.103 4.103 8 C 0.018 3.982 9 C -0.204 4.204 10 C -0.063 4.063 11 C -0.247 4.247 12 C 0.090 3.910 13 C -0.484 4.484 14 H 0.081 0.919 15 C 0.038 3.962 16 N -0.808 5.808 17 Si 0.981 3.019 18 H -0.263 1.263 19 H -0.265 1.265 20 H -0.258 1.258 21 C -0.195 4.195 22 C -0.076 4.076 23 C -0.084 4.084 24 H 0.160 0.840 25 H 0.141 0.859 26 H 0.125 0.875 27 H 0.101 0.899 28 H 0.293 0.707 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 -7.293 -6.211 10.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.030 4.030 3 C -0.010 4.010 4 C -0.105 4.105 5 C -0.050 4.050 6 Cl -0.029 7.029 7 C -0.122 4.122 8 C 0.017 3.983 9 C -0.205 4.205 10 C -0.081 4.081 11 C -0.266 4.266 12 C 0.087 3.913 13 C -0.512 4.512 14 H 0.099 0.901 15 C -0.180 4.180 16 N -0.433 5.433 17 Si 0.801 3.199 18 H -0.187 1.187 19 H -0.189 1.189 20 H -0.182 1.182 21 C -0.214 4.214 22 C -0.094 4.094 23 C -0.105 4.105 24 H 0.178 0.822 25 H 0.158 0.842 26 H 0.143 0.857 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.134 0.866 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.579 -7.555 -6.180 10.781 hybrid contribution 1.223 0.581 0.383 1.407 sum -3.356 -6.974 -5.797 9.670 Atomic orbital electron populations 1.81259 1.12803 1.08887 1.09815 1.25549 0.92318 0.92595 0.92542 1.15546 0.83608 0.97461 1.04398 1.21020 0.91743 0.98344 0.99348 1.20492 0.92078 0.91558 1.00915 1.98376 1.76719 1.46879 1.80939 1.21417 1.01298 0.92270 0.97236 1.18585 0.92128 0.92918 0.94622 1.18176 0.92467 0.97795 1.12058 1.20709 0.98828 0.93012 0.95522 1.20888 0.93948 1.01598 1.10164 1.18094 0.92254 0.92485 0.88465 1.19981 0.99160 0.98080 1.33950 0.90136 1.26802 0.99346 0.99586 0.92258 1.69839 1.18986 1.23880 1.30551 0.85200 0.77133 0.78057 0.79477 1.18729 1.18909 1.18168 1.20968 0.99314 0.97517 1.03614 1.20767 0.93445 0.97401 0.97806 1.21389 0.93186 0.97722 0.98196 0.82235 0.84175 0.85744 0.88127 0.89641 0.87912 0.86608 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.77 18.54 19.00 0.35 -12.41 16 2 C 0.28 6.96 15.32 88.33 1.35 8.31 16 3 C -0.01 -0.15 5.73 -21.40 -0.12 -0.27 16 4 C -0.08 -1.70 9.53 22.63 0.22 -1.49 16 5 C -0.02 -0.54 6.31 22.25 0.14 -0.40 16 6 Cl -0.06 -1.19 28.94 -2.72 -0.08 -1.26 16 7 C -0.10 -2.75 9.20 22.60 0.21 -2.54 16 8 C 0.02 0.54 5.87 -20.07 -0.12 0.42 16 9 C -0.20 -7.73 5.90 -19.87 -0.12 -7.85 16 10 C -0.06 -2.45 9.36 22.22 0.21 -2.24 16 11 C -0.25 -11.11 9.73 22.47 0.22 -10.89 16 12 C 0.09 4.50 5.57 -21.28 -0.12 4.38 16 13 C -0.48 -24.31 9.03 23.39 0.21 -24.10 16 14 H 0.08 3.89 7.91 -2.91 -0.02 3.87 16 15 C 0.04 1.76 5.13 85.28 0.44 2.19 16 16 N -0.81 -39.26 10.97 21.84 0.24 -39.02 16 17 Si 0.98 35.33 29.60 68.60 2.03 37.36 16 18 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 19 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 20 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 21 C -0.19 -9.42 8.63 22.46 0.19 -9.23 16 22 C -0.08 -3.15 9.36 22.22 0.21 -2.94 16 23 C -0.08 -2.19 9.13 22.81 0.21 -1.98 16 24 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 25 H 0.14 3.69 6.16 -2.91 -0.02 3.67 16 26 H 0.12 3.98 6.17 -2.91 -0.02 3.96 16 27 H 0.10 4.29 8.06 -2.91 -0.02 4.26 16 28 H 0.29 12.75 8.30 -92.71 -0.77 11.98 16 29 H 0.10 5.21 6.18 -2.91 -0.02 5.19 16 30 H 0.12 4.15 6.17 -2.91 -0.02 4.13 16 31 H 0.14 3.47 6.18 -2.91 -0.02 3.46 16 Total: -1.00 -53.12 296.32 6.86 -46.26 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.19 Total: 17.69 kcal Atomic # 6 Polarization: -51.74 SS G_CDS: 3.13 Total: -48.62 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.59 Total: -51.43 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.26 kcal Total: -53.12 6.86 -46.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242569154.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.197 kcal (2) G-P(sol) polarization free energy of solvation -53.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds