Wall clock time and date at job start Tue Mar 31 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39762 * 120.07048 * 202.06178 * 3 2 1 5 5 C 1.38204 * 120.13355 * 180.02562 * 4 3 2 6 6 Cl 1.73602 * 119.85630 * 179.72050 * 5 4 3 7 7 C 1.38181 * 120.28338 * 0.02562 * 5 4 3 8 8 C 1.39701 * 120.14368 * 359.97438 * 7 5 4 9 9 C 1.47897 * 120.06832 * 180.02562 * 8 7 5 10 10 C 1.39153 * 120.33061 * 130.00253 * 9 8 7 11 11 C 1.38096 * 119.98130 * 180.02562 * 10 9 8 12 12 C 1.38925 * 120.67518 * 0.02562 * 11 10 9 13 13 C 1.36441 * 120.67906 * 359.97438 * 12 11 10 14 14 C 1.40754 * 119.98719 * 359.71432 * 13 12 11 15 15 C 1.40887 * 120.32619 * 180.30280 * 14 13 12 16 16 H 1.08003 * 119.99628 * 153.73775 * 15 14 13 17 17 C 1.40064 * 120.00363 * 333.74075 * 15 14 13 18 18 N 1.30775 * 120.00108 * 343.03146 * 17 15 14 19 19 Si 1.86800 * 120.00056 * 163.02857 * 17 15 14 20 20 H 1.48495 * 109.47087 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46883 * 119.99956 * 19 17 15 22 22 H 1.48495 * 109.47305 * 239.99820 * 19 17 15 23 23 C 1.39332 * 120.07285 * 22.07599 * 3 2 1 24 24 H 1.07996 * 119.92991 * 0.04084 * 4 3 2 25 25 H 1.07999 * 119.92776 * 180.02562 * 7 5 4 26 26 H 1.07999 * 120.01066 * 359.97438 * 10 9 8 27 27 H 1.07995 * 119.66258 * 180.02562 * 11 10 9 28 28 H 1.07997 * 119.65856 * 179.97438 * 12 11 10 29 29 H 1.08008 * 120.00319 * 180.02562 * 13 12 11 30 30 H 0.96996 * 119.99988 * 180.02562 * 18 17 15 31 31 H 1.08001 * 120.14209 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2678 1.1219 0.4543 5 6 4.6498 1.1241 0.4544 6 17 5.5118 2.5235 1.0134 7 6 5.3485 0.0197 0.0055 8 6 4.6608 -1.1074 -0.4512 9 6 5.4102 -2.2888 -0.9307 10 6 5.1012 -3.5586 -0.4527 11 6 5.8060 -4.6566 -0.9050 12 6 6.8262 -4.5095 -1.8364 13 6 7.1519 -3.2773 -2.3234 14 6 6.4476 -2.1396 -1.8867 15 6 6.7737 -0.8646 -2.3895 16 1 6.0259 -0.0857 -2.4125 17 6 8.0677 -0.6071 -2.8597 18 7 9.0510 -1.4077 -2.5399 19 14 8.3889 0.8799 -3.9438 20 1 7.1196 1.6205 -4.1569 21 1 9.3762 1.7706 -3.2823 22 1 8.9266 0.4311 -5.2532 23 6 3.2667 -1.1164 -0.4532 24 1 2.7274 1.9882 0.8062 25 1 6.4284 0.0275 0.0085 26 1 4.3110 -3.6852 0.2725 27 1 5.5616 -5.6398 -0.5309 28 1 7.3670 -5.3795 -2.1786 29 1 7.9468 -3.1755 -3.0476 30 1 9.9472 -1.2292 -2.8652 31 1 2.7306 -1.9851 -0.8058 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242569621.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:59 Heat of formation + Delta-G solvation = 53.801137 kcal Electronic energy + Delta-G solvation = -18345.331028 eV Core-core repulsion = 15388.630044 eV Total energy + Delta-G solvation = -2956.700984 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.36228 -37.54453 -36.53054 -35.86846 -33.90177 -32.09457 -30.80748 -29.74409 -28.34028 -25.53205 -23.62169 -22.76442 -20.96101 -20.37340 -18.19642 -17.37899 -15.97524 -15.59606 -15.35519 -14.96712 -14.52120 -14.03292 -13.87606 -13.46231 -13.01822 -12.79375 -12.78318 -12.65868 -12.47498 -11.83767 -11.53703 -11.43290 -11.26016 -11.17280 -11.01768 -10.86947 -10.73139 -10.54704 -9.83849 -9.63834 -9.37566 -8.65488 -8.50171 -7.59865 -7.43963 -6.97210 -4.56776 1.00571 1.38782 2.28215 2.59564 2.76108 2.80992 2.99005 3.04034 3.09662 3.21900 3.78859 4.02562 4.10369 4.44703 5.05054 5.31335 5.43418 5.45858 5.63830 5.91480 6.02400 6.07889 6.27596 6.37089 6.42635 6.59484 6.77214 6.90011 7.01464 7.05496 7.17394 7.37140 7.57261 7.68940 7.82228 7.91604 8.04679 8.39947 8.63763 8.72948 9.94142 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.007259 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.324712 B = 3856.418926 C = 5338.821589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.269 3.731 3 C -0.027 4.027 4 C -0.091 4.091 5 C -0.038 4.038 6 Cl -0.075 7.075 7 C -0.059 4.059 8 C 0.039 3.961 9 C -0.202 4.202 10 C -0.065 4.065 11 C -0.242 4.242 12 C -0.097 4.097 13 C -0.156 4.156 14 C 0.135 3.865 15 C -0.451 4.451 16 H 0.085 0.915 17 C 0.079 3.921 18 N -0.781 5.781 19 Si 0.901 3.099 20 H -0.256 1.256 21 H -0.271 1.271 22 H -0.270 1.270 23 C -0.079 4.079 24 H 0.132 0.868 25 H 0.149 0.851 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.284 0.716 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.403 3.415 2.974 5.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.046 4.046 3 C -0.031 4.031 4 C -0.113 4.113 5 C -0.065 4.065 6 Cl -0.047 7.047 7 C -0.078 4.078 8 C 0.038 3.962 9 C -0.203 4.203 10 C -0.083 4.083 11 C -0.261 4.261 12 C -0.116 4.116 13 C -0.175 4.175 14 C 0.132 3.868 15 C -0.479 4.479 16 H 0.103 0.897 17 C -0.141 4.141 18 N -0.405 5.405 19 Si 0.725 3.275 20 H -0.180 1.180 21 H -0.196 1.196 22 H -0.195 1.195 23 C -0.100 4.100 24 H 0.150 0.850 25 H 0.167 0.833 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.136 0.864 30 H 0.095 0.905 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.824 3.520 2.997 6.000 hybrid contribution 0.873 0.728 -0.455 1.225 sum -2.951 4.248 2.542 5.763 Atomic orbital electron populations 1.81199 1.12071 1.08096 1.09527 1.25679 0.92567 0.93232 0.93109 1.15640 0.83956 0.96451 1.07033 1.20759 0.92086 0.97622 1.00784 1.20578 0.91636 0.90035 1.04207 1.98353 1.77129 1.40996 1.88179 1.21680 1.01995 0.90450 0.93663 1.18636 0.90959 0.93523 0.93081 1.18376 1.05952 0.90302 1.05698 1.20561 0.97715 0.92068 0.97961 1.20296 1.02875 0.96712 1.06266 1.20521 0.96831 0.96748 0.97455 1.21055 1.02586 0.91202 1.02696 1.17500 0.88317 0.93301 0.87708 1.19648 0.96073 0.97505 1.34715 0.89695 1.25944 0.95824 0.97938 0.94391 1.69786 1.01343 1.35422 1.33904 0.86333 0.79822 0.81184 0.80130 1.17980 1.19645 1.19532 1.21471 0.93933 0.96637 0.97946 0.84990 0.83284 0.88961 0.89227 0.89326 0.86363 0.90477 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.05 18.54 41.84 0.78 -6.28 16 2 C 0.27 3.99 15.32 -22.47 -0.34 3.65 16 3 C -0.03 -0.39 5.72 -106.99 -0.61 -1.01 16 4 C -0.09 -1.26 9.53 -39.02 -0.37 -1.63 16 5 C -0.04 -0.58 6.31 -39.61 -0.25 -0.83 16 6 Cl -0.08 -1.06 28.94 -51.86 -1.50 -2.56 16 7 C -0.06 -1.02 7.78 -39.06 -0.30 -1.33 16 8 C 0.04 0.70 4.92 -104.96 -0.52 0.18 16 9 C -0.20 -4.22 5.52 -104.22 -0.58 -4.79 16 10 C -0.06 -1.29 9.50 -39.29 -0.37 -1.66 16 11 C -0.24 -4.88 10.03 -39.38 -0.39 -5.27 16 12 C -0.10 -2.06 9.96 -39.98 -0.40 -2.46 16 13 C -0.16 -3.63 8.62 -39.28 -0.34 -3.97 16 14 C 0.13 3.12 5.55 -106.56 -0.59 2.53 16 15 C -0.45 -10.35 7.12 -37.90 -0.27 -10.62 16 16 H 0.09 1.91 6.65 -52.48 -0.35 1.56 16 17 C 0.08 1.76 5.14 -17.32 -0.09 1.67 16 18 N -0.78 -18.02 11.02 55.55 0.61 -17.41 16 19 Si 0.90 17.09 29.59 -169.99 -5.03 12.06 16 20 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 21 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 22 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 23 C -0.08 -1.25 9.22 -38.74 -0.36 -1.61 16 24 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 25 H 0.15 2.83 7.32 -52.49 -0.38 2.45 16 26 H 0.09 1.60 8.04 -52.49 -0.42 1.18 16 27 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.12 2.84 6.26 -52.48 -0.33 2.52 16 30 H 0.28 5.98 8.29 -40.82 -0.34 5.64 16 31 H 0.13 1.96 8.04 -52.49 -0.42 1.54 16 LS Contribution 298.44 15.07 4.50 4.50 Total: -1.00 -23.52 298.44 -8.74 -32.26 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -2.31 Total: 4.57 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -5.79 Total: -27.14 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 1.39 Total: -23.68 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -23.52 -8.74 -32.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242569621.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.062 kcal (2) G-P(sol) polarization free energy of solvation -23.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds