Wall clock time and date at job start Tue Mar 31 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39762 * 120.07048 * 202.06178 * 3 2 1 5 5 C 1.38204 * 120.13355 * 180.02562 * 4 3 2 6 6 Cl 1.73602 * 119.85630 * 179.72050 * 5 4 3 7 7 C 1.38181 * 120.28338 * 0.02562 * 5 4 3 8 8 C 1.39701 * 120.14368 * 359.97438 * 7 5 4 9 9 C 1.47897 * 120.06832 * 180.02562 * 8 7 5 10 10 C 1.39153 * 120.33061 * 130.00253 * 9 8 7 11 11 C 1.38096 * 119.98130 * 180.02562 * 10 9 8 12 12 C 1.38925 * 120.67518 * 0.02562 * 11 10 9 13 13 C 1.36441 * 120.67906 * 359.97438 * 12 11 10 14 14 C 1.40754 * 119.98719 * 359.71432 * 13 12 11 15 15 C 1.40887 * 120.32619 * 180.30280 * 14 13 12 16 16 H 1.08003 * 119.99628 * 153.73775 * 15 14 13 17 17 C 1.40064 * 120.00363 * 333.74075 * 15 14 13 18 18 N 1.30775 * 120.00108 * 343.03146 * 17 15 14 19 19 Si 1.86800 * 120.00056 * 163.02857 * 17 15 14 20 20 H 1.48495 * 109.47087 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46883 * 119.99956 * 19 17 15 22 22 H 1.48495 * 109.47305 * 239.99820 * 19 17 15 23 23 C 1.39332 * 120.07285 * 22.07599 * 3 2 1 24 24 H 1.07996 * 119.92991 * 0.04084 * 4 3 2 25 25 H 1.07999 * 119.92776 * 180.02562 * 7 5 4 26 26 H 1.07999 * 120.01066 * 359.97438 * 10 9 8 27 27 H 1.07995 * 119.66258 * 180.02562 * 11 10 9 28 28 H 1.07997 * 119.65856 * 179.97438 * 12 11 10 29 29 H 1.08008 * 120.00319 * 180.02562 * 13 12 11 30 30 H 0.96996 * 119.99988 * 180.02562 * 18 17 15 31 31 H 1.08001 * 120.14209 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2678 1.1219 0.4543 5 6 4.6498 1.1241 0.4544 6 17 5.5118 2.5235 1.0134 7 6 5.3485 0.0197 0.0055 8 6 4.6608 -1.1074 -0.4512 9 6 5.4102 -2.2888 -0.9307 10 6 5.1012 -3.5586 -0.4527 11 6 5.8060 -4.6566 -0.9050 12 6 6.8262 -4.5095 -1.8364 13 6 7.1519 -3.2773 -2.3234 14 6 6.4476 -2.1396 -1.8867 15 6 6.7737 -0.8646 -2.3895 16 1 6.0259 -0.0857 -2.4125 17 6 8.0677 -0.6071 -2.8597 18 7 9.0510 -1.4077 -2.5399 19 14 8.3889 0.8799 -3.9438 20 1 7.1196 1.6205 -4.1569 21 1 9.3762 1.7706 -3.2823 22 1 8.9266 0.4311 -5.2532 23 6 3.2667 -1.1164 -0.4532 24 1 2.7274 1.9882 0.8062 25 1 6.4284 0.0275 0.0085 26 1 4.3110 -3.6852 0.2725 27 1 5.5616 -5.6398 -0.5309 28 1 7.3670 -5.3795 -2.1786 29 1 7.9468 -3.1755 -3.0476 30 1 9.9472 -1.2292 -2.8652 31 1 2.7306 -1.9851 -0.8058 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242569621.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:58 Heat of formation + Delta-G solvation = 46.583483 kcal Electronic energy + Delta-G solvation = -18345.644009 eV Core-core repulsion = 15388.630044 eV Total energy + Delta-G solvation = -2957.013965 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70612 -39.07157 -37.74383 -37.11546 -35.54931 -33.51373 -32.11416 -31.36555 -29.82797 -27.17453 -24.92730 -24.15379 -22.59531 -21.82435 -19.59757 -18.99207 -17.24739 -17.17615 -16.67603 -16.40693 -15.92271 -15.39061 -15.34326 -14.94577 -14.37025 -14.27935 -14.04650 -13.94249 -13.91563 -13.43982 -13.05256 -12.81954 -12.77781 -12.55762 -12.44069 -12.24979 -12.12043 -11.92438 -11.42643 -11.23073 -11.03181 -10.03610 -9.75324 -9.26708 -9.01423 -8.60807 -6.27429 -0.25580 0.10308 0.98843 1.07914 1.19939 1.42587 1.53279 1.55288 1.60735 1.92665 2.21754 2.76400 2.78084 2.86006 3.77422 3.85484 4.06942 4.15643 4.33099 4.50481 4.60223 4.63922 4.77729 4.97944 5.13160 5.16888 5.20863 5.34155 5.44822 5.59529 5.68219 5.73708 6.06929 6.15981 6.25119 6.37532 6.39721 6.72332 6.95623 7.06284 8.32369 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.007259 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.324712 B = 3856.418926 C = 5338.821589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.288 3.712 3 C -0.018 4.018 4 C -0.069 4.069 5 C -0.039 4.039 6 Cl -0.063 7.063 7 C -0.064 4.064 8 C 0.015 3.985 9 C -0.199 4.199 10 C -0.072 4.072 11 C -0.243 4.243 12 C -0.105 4.105 13 C -0.185 4.185 14 C 0.105 3.895 15 C -0.471 4.471 16 H 0.082 0.918 17 C 0.045 3.955 18 N -0.815 5.815 19 Si 0.959 3.041 20 H -0.257 1.257 21 H -0.267 1.267 22 H -0.268 1.268 23 C -0.068 4.068 24 H 0.162 0.838 25 H 0.126 0.874 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.288 0.712 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 4.254 3.799 7.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.027 4.027 3 C -0.022 4.022 4 C -0.090 4.090 5 C -0.066 4.066 6 Cl -0.034 7.034 7 C -0.084 4.084 8 C 0.014 3.986 9 C -0.201 4.201 10 C -0.090 4.090 11 C -0.262 4.262 12 C -0.123 4.123 13 C -0.204 4.204 14 C 0.103 3.897 15 C -0.499 4.499 16 H 0.100 0.900 17 C -0.171 4.171 18 N -0.440 5.440 19 Si 0.781 3.219 20 H -0.180 1.180 21 H -0.192 1.192 22 H -0.193 1.193 23 C -0.089 4.089 24 H 0.180 0.820 25 H 0.144 0.856 26 H 0.139 0.861 27 H 0.134 0.866 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.099 0.901 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.504 4.355 3.829 7.995 hybrid contribution 1.289 0.446 -0.595 1.488 sum -4.215 4.801 3.235 7.161 Atomic orbital electron populations 1.81241 1.12654 1.08739 1.10205 1.25463 0.92181 0.92582 0.92431 1.15525 0.83725 0.96206 1.06759 1.21043 0.91424 0.98070 0.98488 1.20544 0.92197 0.89808 1.04007 1.98360 1.77085 1.40019 1.87944 1.21487 1.01034 0.91314 0.94539 1.18508 0.91844 0.93149 0.95064 1.18696 1.05003 0.91967 1.04421 1.20925 0.98282 0.91577 0.98193 1.20660 1.01987 0.98190 1.05380 1.20770 0.97332 0.96610 0.97624 1.21030 1.03265 0.92424 1.03720 1.17825 0.89602 0.93513 0.88788 1.19701 0.96459 0.97568 1.36206 0.90031 1.26566 0.95452 1.00073 0.95038 1.69837 1.01776 1.37123 1.35271 0.85471 0.79469 0.78375 0.78576 1.18022 1.19199 1.19304 1.21477 0.92867 0.97449 0.97072 0.82030 0.85589 0.86122 0.86553 0.87662 0.88278 0.90100 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.49 18.54 19.00 0.35 -13.14 16 2 C 0.29 7.64 15.32 88.33 1.35 8.99 16 3 C -0.02 -0.48 5.72 -21.40 -0.12 -0.60 16 4 C -0.07 -1.69 9.53 22.63 0.22 -1.47 16 5 C -0.04 -1.11 6.31 22.25 0.14 -0.97 16 6 Cl -0.06 -1.66 28.94 -2.72 -0.08 -1.74 16 7 C -0.06 -2.21 7.78 22.61 0.18 -2.04 16 8 C 0.01 0.53 4.92 -20.08 -0.10 0.43 16 9 C -0.20 -8.32 5.52 -19.61 -0.11 -8.43 16 10 C -0.07 -2.75 9.50 22.46 0.21 -2.54 16 11 C -0.24 -9.47 10.03 22.40 0.22 -9.25 16 12 C -0.10 -4.48 9.96 22.01 0.22 -4.26 16 13 C -0.19 -8.91 8.62 22.47 0.19 -8.72 16 14 C 0.11 5.02 5.55 -21.12 -0.12 4.91 16 15 C -0.47 -22.29 7.12 23.36 0.17 -22.13 16 16 H 0.08 3.77 6.65 -2.91 -0.02 3.75 16 17 C 0.05 2.08 5.14 85.29 0.44 2.52 16 18 N -0.81 -39.20 11.02 21.85 0.24 -38.96 16 19 Si 0.96 35.68 29.59 68.60 2.03 37.71 16 20 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 21 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 22 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 23 C -0.07 -2.00 9.22 22.82 0.21 -1.79 16 24 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 25 H 0.13 4.93 7.32 -2.91 -0.02 4.91 16 26 H 0.12 3.87 8.04 -2.91 -0.02 3.84 16 27 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 28 H 0.11 3.99 8.06 -2.91 -0.02 3.97 16 29 H 0.10 5.05 6.26 -2.91 -0.02 5.03 16 30 H 0.29 12.64 8.29 -92.71 -0.77 11.87 16 31 H 0.14 3.87 8.04 -2.91 -0.02 3.85 16 Total: -1.00 -50.94 298.44 6.83 -44.11 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 1.18 Total: 17.35 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 3.10 Total: -45.34 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.59 Total: -52.10 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.74 kcal Total: -50.94 6.83 -44.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242569621.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.694 kcal (2) G-P(sol) polarization free energy of solvation -50.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds