Wall clock time and date at job start Tue Mar 31 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86802 * 120.00178 * 2 1 4 4 H 1.48506 * 109.47091 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47096 * 300.00055 * 3 2 1 6 6 H 1.48500 * 109.47081 * 60.00680 * 3 2 1 7 7 C 1.40155 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00478 * 179.97438 * 7 2 1 9 9 C 1.40756 * 119.99961 * 0.02562 * 7 2 1 10 10 N 1.33974 * 120.29123 * 10.49607 * 9 7 2 11 11 C 1.31605 * 119.90303 * 180.27714 * 10 9 7 12 12 C 1.39193 * 120.51659 * 359.74359 * 11 10 9 13 13 N 1.32005 * 120.59648 * 359.97438 * 12 11 10 14 14 C 1.32907 * 120.07257 * 0.02562 * 13 12 11 15 15 C 1.47693 * 120.25274 * 179.97438 * 14 13 12 16 16 C 1.40156 * 120.43594 * 44.03372 * 15 14 13 17 17 N 1.30961 * 120.85546 * 180.28656 * 16 15 14 18 18 C 1.33627 * 122.40226 * 359.97438 * 17 16 15 19 19 S 1.76052 * 130.11421 * 180.02562 * 18 17 16 20 20 C 1.75268 * 92.26940 * 179.97438 * 19 18 17 21 21 C 1.31724 * 111.50292 * 359.97438 * 20 19 18 22 22 C 1.40072 * 120.44151 * 0.02584 * 18 17 16 23 23 C 1.39292 * 120.43508 * 224.31119 * 15 14 13 24 24 H 0.96998 * 119.99954 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.74476 * 179.75298 * 11 10 9 26 26 H 1.07997 * 119.70255 * 180.02562 * 12 11 10 27 27 H 1.07998 * 119.56993 * 0.25242 * 16 15 14 28 28 H 1.07996 * 124.24795 * 180.02562 * 20 19 18 29 29 H 1.07996 * 122.58407 * 180.02562 * 21 20 19 30 30 H 1.07993 * 120.69806 * 359.70815 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3463 -0.0006 5 1 1.8823 2.3964 -1.2125 6 1 1.8824 2.3964 1.2126 7 6 2.0077 -1.2138 -0.0005 8 1 3.0877 -1.2139 -0.0010 9 6 1.3039 -2.4328 -0.0016 10 7 -0.0190 -2.4491 -0.2129 11 6 -0.6703 -3.5927 -0.2069 12 6 0.0053 -4.7897 0.0124 13 7 1.3094 -4.7975 0.2172 14 6 1.9905 -3.6562 0.2160 15 6 3.4495 -3.6602 0.4453 16 6 4.2657 -4.6053 -0.1912 17 7 5.5596 -4.6198 0.0105 18 6 6.1678 -3.7487 0.8210 19 16 7.8707 -3.5837 1.2358 20 6 7.5530 -2.2222 2.2929 21 6 6.2703 -1.9241 2.3240 22 6 5.4264 -2.7709 1.4965 23 6 4.0318 -2.7284 1.3014 24 1 -0.4850 0.8400 0.0004 25 1 -1.7373 -3.6025 -0.3735 26 1 -0.5421 -5.7206 0.0142 27 1 3.8217 -5.3313 -0.8561 28 1 8.3135 -1.6936 2.8483 29 1 5.8758 -1.1136 2.9188 30 1 3.4270 -1.9887 1.8047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242678345.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:13 Heat of formation + Delta-G solvation = 76.194608 kcal Electronic energy + Delta-G solvation = -18672.162037 eV Core-core repulsion = 15750.768564 eV Total energy + Delta-G solvation = -2921.393473 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.047 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.45748 -40.45439 -36.69694 -36.07976 -34.67146 -33.56256 -31.33039 -30.35923 -28.14264 -25.85714 -24.66570 -23.91123 -23.48045 -21.42698 -19.71517 -19.09641 -18.05818 -17.55794 -17.16520 -16.75783 -16.38539 -15.93035 -15.46715 -15.22698 -14.85494 -14.62635 -14.20105 -14.07601 -13.46018 -13.30745 -13.16909 -13.04269 -12.73727 -12.54017 -12.01888 -11.85685 -11.81538 -11.54591 -11.24054 -10.89537 -10.57455 -9.95079 -9.52246 -9.37843 -8.81193 -8.47844 -6.69150 -0.41889 -0.10775 0.32226 0.66390 1.02035 1.08459 1.35845 1.37252 1.48204 1.52814 2.13211 2.65652 2.74762 3.38581 3.55994 3.68988 3.82759 4.01061 4.01651 4.18041 4.32598 4.46612 4.57478 4.66214 4.79027 4.94904 5.01446 5.06023 5.10057 5.30507 5.42671 5.56755 5.73525 6.04683 6.39301 6.63763 6.74322 7.24268 7.82659 8.20700 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.006851 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.387429 B = 4085.991562 C = 5645.805022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.027 3.973 3 Si 0.979 3.021 4 H -0.249 1.249 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.424 4.424 8 H 0.102 0.898 9 C 0.195 3.805 10 N -0.485 5.485 11 C 0.082 3.918 12 C -0.112 4.112 13 N -0.424 5.424 14 C -0.045 4.045 15 C -0.042 4.042 16 C 0.137 3.863 17 N -0.477 5.477 18 C 0.013 3.987 19 S 0.133 5.867 20 C -0.174 4.174 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.031 4.031 24 H 0.289 0.711 25 H 0.164 0.836 26 H 0.166 0.834 27 H 0.163 0.837 28 H 0.215 0.785 29 H 0.172 0.828 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.154 1.670 4.298 11.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.172 1.172 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.453 4.453 8 H 0.120 0.880 9 C 0.071 3.929 10 N -0.202 5.202 11 C -0.089 4.089 12 C -0.274 4.274 13 N -0.137 5.137 14 C -0.191 4.191 15 C -0.048 4.048 16 C -0.032 4.032 17 N -0.187 5.187 18 C -0.230 4.230 19 S 0.391 5.609 20 C -0.307 4.307 21 C -0.153 4.153 22 C -0.143 4.143 23 C -0.059 4.059 24 H 0.100 0.900 25 H 0.181 0.819 26 H 0.183 0.817 27 H 0.180 0.820 28 H 0.231 0.769 29 H 0.189 0.811 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.865 0.497 3.525 12.388 hybrid contribution -2.326 1.579 0.474 2.851 sum 9.540 2.076 3.999 10.550 Atomic orbital electron populations 1.70087 1.09067 1.30330 1.26430 1.27069 0.95704 1.04666 0.92344 0.85172 0.79839 0.75744 0.79418 1.17207 1.19056 1.18093 1.20121 0.95450 0.89647 1.40128 0.88043 1.19599 0.89457 0.93339 0.90555 1.69492 1.07979 1.26396 1.16314 1.24109 1.01464 0.89861 0.93489 1.23168 0.90883 0.99364 1.13966 1.67754 1.09241 1.29169 1.07513 1.20108 0.92910 0.90521 1.15548 1.19112 0.91936 0.96507 0.97205 1.22889 0.87277 0.96371 0.96678 1.67073 1.11774 1.23601 1.16243 1.24148 1.00765 0.97472 1.00641 1.83855 0.98750 1.32411 1.45835 1.25550 1.00308 1.01043 1.03833 1.21011 0.92603 1.01083 1.00603 1.20400 0.94380 0.98466 1.01039 1.21689 0.92568 0.97045 0.94647 0.90004 0.81911 0.81712 0.82024 0.76853 0.81101 0.83770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.43 11.55 21.86 0.25 -36.17 16 2 C 0.03 1.25 5.49 85.33 0.47 1.72 16 3 Si 0.98 34.36 29.56 68.60 2.03 36.38 16 4 H -0.25 -8.43 7.11 99.48 0.71 -7.73 16 5 H -0.27 -9.16 7.11 99.48 0.71 -8.46 16 6 H -0.26 -8.48 7.11 99.48 0.71 -7.77 16 7 C -0.42 -21.01 7.47 23.35 0.17 -20.84 16 8 H 0.10 4.79 5.37 -2.91 -0.02 4.77 16 9 C 0.19 10.24 6.51 40.36 0.26 10.50 16 10 N -0.48 -25.50 8.12 -187.84 -1.53 -27.03 16 11 C 0.08 3.67 11.22 84.96 0.95 4.63 16 12 C -0.11 -4.84 11.22 84.90 0.95 -3.88 16 13 N -0.42 -20.22 10.32 -182.32 -1.88 -22.10 16 14 C -0.05 -2.22 6.43 42.41 0.27 -1.95 16 15 C -0.04 -1.84 5.28 -20.06 -0.11 -1.95 16 16 C 0.14 5.70 10.84 85.29 0.92 6.63 16 17 N -0.48 -19.01 10.35 -189.83 -1.97 -20.97 16 18 C 0.01 0.48 7.65 84.87 0.65 1.13 16 19 S 0.13 3.42 23.23 -56.49 -1.31 2.11 16 20 C -0.17 -3.55 11.01 67.11 0.74 -2.81 16 21 C -0.12 -3.15 10.39 23.41 0.24 -2.90 16 22 C -0.13 -4.64 6.05 -20.34 -0.12 -4.76 16 23 C -0.03 -1.25 7.73 23.17 0.18 -1.07 16 24 H 0.29 12.68 8.29 -92.71 -0.77 11.91 16 25 H 0.16 6.06 8.06 -2.91 -0.02 6.03 16 26 H 0.17 5.81 8.06 -2.91 -0.02 5.79 16 27 H 0.16 6.44 8.06 -2.91 -0.02 6.42 16 28 H 0.21 2.38 8.06 -2.91 -0.02 2.35 16 29 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 30 H 0.14 5.82 6.76 -2.91 -0.02 5.80 16 Total: -1.00 -63.19 282.44 2.39 -60.80 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 1.20 Total: 22.55 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 5.59 Total: -15.57 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -5.12 Total: -106.28 kcal Atomic # 14 Polarization: 34.36 SS G_CDS: 2.03 Total: 36.38 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.31 Total: 2.11 kcal Total: -63.19 2.39 -60.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242678345.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.000 kcal (2) G-P(sol) polarization free energy of solvation -63.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds