Wall clock time and date at job start Tue Mar 31 2020 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86800 * 120.00069 * 2 1 4 4 H 1.48500 * 109.46824 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46820 * 119.99931 * 3 2 1 6 6 H 1.48503 * 109.47086 * 239.99842 * 3 2 1 7 7 C 1.40048 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00170 * 357.97709 * 7 2 1 9 9 C 1.41320 * 119.99997 * 177.97448 * 7 2 1 10 10 C 1.40842 * 120.14262 * 179.49313 * 9 7 2 11 11 N 1.31879 * 119.96706 * 179.77514 * 10 9 7 12 12 C 1.32187 * 120.28264 * 0.47997 * 11 10 9 13 13 C 1.40036 * 120.30180 * 359.77237 * 12 11 10 14 14 C 1.48251 * 119.99124 * 179.97438 * 13 12 11 15 15 C 1.39838 * 120.40299 * 184.74784 * 14 13 12 16 16 N 1.31058 * 120.89880 * 179.67363 * 15 14 13 17 17 C 1.33549 * 122.34647 * 0.63562 * 16 15 14 18 18 S 1.76047 * 130.13874 * 179.67457 * 17 16 15 19 19 C 1.75270 * 92.25741 * 179.97438 * 18 17 16 20 20 C 1.31749 * 111.48277 * 0.02562 * 19 18 17 21 21 C 1.39980 * 120.39770 * 359.65561 * 17 16 15 22 22 C 1.38928 * 120.40125 * 5.02069 * 14 13 12 23 23 N 1.32559 * 120.02031 * 359.97438 * 13 12 11 24 24 H 0.97003 * 119.99660 * 174.83610 * 1 2 3 25 25 H 1.08002 * 120.02066 * 0.02562 * 10 9 7 26 26 H 1.08006 * 119.84886 * 179.75032 * 12 11 10 27 27 H 1.08004 * 119.54915 * 359.97373 * 15 14 13 28 28 H 1.07999 * 124.26274 * 180.02562 * 19 18 17 29 29 H 1.07998 * 122.58784 * 180.02562 * 20 19 18 30 30 H 1.08001 * 120.68559 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2763 2.7464 -0.0006 5 1 3.0951 1.6963 1.2125 6 1 3.0952 1.6964 -1.2125 7 6 2.0076 -1.2129 0.0005 8 1 1.4681 -2.1479 0.0340 9 6 3.4201 -1.2133 -0.0427 10 6 4.1277 -2.4310 -0.0315 11 7 5.4457 -2.4275 -0.0765 12 6 6.1080 -1.2845 -0.1226 13 6 5.4164 -0.0668 -0.1289 14 6 6.1662 1.2111 -0.1801 15 6 5.4908 2.4320 -0.0871 16 7 6.1446 3.5673 -0.1248 17 6 7.4715 3.6234 -0.2648 18 16 8.5460 5.0154 -0.3480 19 6 9.9631 3.9986 -0.5209 20 6 9.6433 2.7205 -0.5158 21 6 8.2229 2.4472 -0.3708 22 6 7.5477 1.2102 -0.3268 23 7 4.0914 -0.0565 -0.0890 24 1 -0.4850 -0.8367 -0.0756 25 1 3.5911 -3.3674 0.0098 26 1 7.1876 -1.2897 -0.1551 27 1 4.4164 2.4394 0.0223 28 1 10.9715 4.3725 -0.6192 29 1 10.3797 1.9363 -0.6110 30 1 8.0931 0.2813 -0.4049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242680948.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:16 Heat of formation + Delta-G solvation = 64.721695 kcal Electronic energy + Delta-G solvation = -18510.428709 eV Core-core repulsion = 15588.537734 eV Total energy + Delta-G solvation = -2921.890976 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.047 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.80866 -40.84510 -36.89981 -36.28838 -35.08115 -34.11871 -31.78913 -30.46577 -27.98849 -26.25055 -25.21405 -24.15533 -23.22817 -21.49522 -20.59168 -19.53852 -18.42705 -17.81162 -17.30925 -17.20870 -16.58436 -15.91411 -15.57260 -15.41863 -15.25655 -14.93981 -14.66337 -14.36300 -13.71650 -13.58059 -13.15826 -13.12470 -12.92337 -12.91034 -12.10410 -11.91413 -11.82552 -11.51101 -11.29522 -11.22028 -10.62376 -10.23060 -9.81369 -9.63623 -9.24893 -8.92434 -7.01071 -0.75207 -0.40731 0.17924 0.47175 0.71852 0.96382 1.27045 1.44112 1.54776 1.85957 2.22491 2.38241 2.64111 2.98084 3.31228 3.42701 3.55336 3.66581 3.81310 3.87797 3.96296 4.15540 4.32315 4.54164 4.63010 4.72710 4.84574 4.93998 5.05380 5.23668 5.24250 5.28209 5.37024 5.81170 6.01899 6.34939 6.52862 6.84589 7.31324 7.79606 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.024082 B = 0.005515 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.438883 B = 5075.765530 C = 6224.651283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.022 3.978 3 Si 1.167 2.833 4 H -0.322 1.322 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.475 4.475 8 H 0.089 0.911 9 C 0.192 3.808 10 C -0.046 4.046 11 N -0.421 5.421 12 C -0.083 4.083 13 C 0.161 3.839 14 C -0.103 4.103 15 C 0.130 3.870 16 N -0.484 5.484 17 C 0.023 3.977 18 S 0.136 5.864 19 C -0.174 4.174 20 C -0.111 4.111 21 C -0.130 4.130 22 C 0.000 4.000 23 N -0.562 5.562 24 H 0.291 0.709 25 H 0.159 0.841 26 H 0.184 0.816 27 H 0.147 0.853 28 H 0.217 0.783 29 H 0.189 0.811 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.689 6.555 -1.286 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.199 4.199 3 Si 1.002 2.998 4 H -0.255 1.255 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.508 4.508 8 H 0.107 0.893 9 C 0.066 3.934 10 C -0.215 4.215 11 N -0.132 5.132 12 C -0.240 4.240 13 C 0.018 3.982 14 C -0.110 4.110 15 C -0.039 4.039 16 N -0.194 5.194 17 C -0.221 4.221 18 S 0.396 5.604 19 C -0.307 4.307 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.028 4.028 23 N -0.285 5.285 24 H 0.102 0.898 25 H 0.176 0.824 26 H 0.201 0.799 27 H 0.164 0.836 28 H 0.234 0.766 29 H 0.206 0.794 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 18.836 10.455 -1.105 21.571 hybrid contribution -0.466 -4.206 -0.090 4.233 sum 18.370 6.249 -1.196 19.441 Atomic orbital electron populations 1.70629 1.08283 1.33482 1.30657 1.28231 0.95623 1.07323 0.88688 0.81904 0.69919 0.69094 0.78850 1.25521 1.21740 1.21247 1.20857 0.90512 0.96676 1.42785 0.89253 1.19549 0.94927 0.88850 0.90061 1.23404 0.90375 0.98045 1.09725 1.67839 1.09018 1.29913 1.06420 1.23163 1.01073 0.86641 1.13171 1.20471 0.89945 0.93491 0.94278 1.19378 0.94520 0.92121 1.04934 1.23202 1.00332 0.87025 0.93314 1.67160 1.08036 1.29720 1.14479 1.24427 0.94267 0.99337 1.04062 1.84226 0.94890 1.04570 1.76704 1.25675 1.03355 0.95925 1.05764 1.21041 0.91883 0.98454 1.02656 1.20492 0.95949 0.92822 1.04805 1.21770 0.91118 0.98682 0.91191 1.67079 1.08196 1.28742 1.24509 0.89784 0.82354 0.79941 0.83613 0.76586 0.79382 0.79891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.03 13.65 21.84 0.30 -42.73 16 2 C 0.02 1.16 5.52 85.30 0.47 1.63 16 3 Si 1.17 57.67 22.22 68.60 1.52 59.19 16 4 H -0.32 -15.66 7.11 99.48 0.71 -14.96 16 5 H -0.29 -14.23 6.66 99.48 0.66 -13.57 16 6 H -0.28 -14.01 6.48 99.48 0.64 -13.36 16 7 C -0.48 -24.91 9.60 23.47 0.23 -24.69 16 8 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 9 C 0.19 9.65 6.42 40.23 0.26 9.91 16 10 C -0.05 -2.07 10.98 85.32 0.94 -1.14 16 11 N -0.42 -17.83 10.47 -192.03 -2.01 -19.84 16 12 C -0.08 -3.19 10.62 85.08 0.90 -2.29 16 13 C 0.16 6.87 6.73 42.14 0.28 7.15 16 14 C -0.10 -3.87 5.87 -20.06 -0.12 -3.99 16 15 C 0.13 5.38 10.65 85.20 0.91 6.29 16 16 N -0.48 -18.53 10.36 -190.15 -1.97 -20.50 16 17 C 0.02 0.70 7.65 84.85 0.65 1.35 16 18 S 0.14 2.88 23.23 -56.49 -1.31 1.57 16 19 C -0.17 -2.31 11.01 67.09 0.74 -1.57 16 20 C -0.11 -1.74 10.39 23.38 0.24 -1.50 16 21 C -0.13 -3.32 6.05 -20.35 -0.12 -3.44 16 22 C 0.00 0.00 9.58 23.11 0.22 0.23 16 23 N -0.56 -27.79 4.32 -177.67 -0.77 -28.56 16 24 H 0.29 14.64 8.72 -92.71 -0.81 13.83 16 25 H 0.16 6.48 8.06 -2.91 -0.02 6.46 16 26 H 0.18 5.18 6.26 -2.91 -0.02 5.17 16 27 H 0.15 6.61 2.61 -2.91 -0.01 6.60 16 28 H 0.22 0.98 8.06 -2.91 -0.02 0.96 16 29 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 30 H 0.18 3.55 6.29 -2.91 -0.02 3.53 16 Total: -1.00 -64.66 271.67 2.43 -62.23 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: 1.07 Total: 0.68 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 5.60 Total: -12.05 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -4.45 Total: -111.63 kcal Atomic # 14 Polarization: 57.67 SS G_CDS: 1.52 Total: 59.19 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.31 Total: 1.57 kcal Total: -64.66 2.43 -62.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242680948.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.955 kcal (2) G-P(sol) polarization free energy of solvation -64.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds