Wall clock time and date at job start Tue Mar 31 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86805 * 119.99993 * 2 1 4 4 H 1.48497 * 109.47322 * 179.72767 * 3 2 1 5 5 H 1.48498 * 109.47165 * 299.72714 * 3 2 1 6 6 H 1.48501 * 109.47099 * 59.72540 * 3 2 1 7 7 C 1.40125 * 120.00113 * 179.72673 * 2 1 3 8 8 H 1.08000 * 119.99551 * 179.97438 * 7 2 1 9 9 C 1.41023 * 119.99917 * 0.02562 * 7 2 1 10 10 N 1.33668 * 119.13081 * 359.72805 * 9 7 2 11 11 C 1.31569 * 120.83067 * 179.71370 * 10 9 7 12 12 C 1.40475 * 119.09119 * 0.55076 * 11 10 9 13 13 C 1.47864 * 120.79301 * 179.74356 * 12 11 10 14 14 C 1.40113 * 120.43281 * 179.97438 * 13 12 11 15 15 N 1.30981 * 120.86554 * 179.97438 * 14 13 12 16 16 C 1.33615 * 122.39039 * 0.02562 * 15 14 13 17 17 S 1.76055 * 130.11654 * 179.97438 * 16 15 14 18 18 C 1.75256 * 92.26799 * 180.02562 * 17 16 15 19 19 C 1.31730 * 111.50174 * 0.02562 * 18 17 16 20 20 C 1.40053 * 120.43445 * 0.02562 * 16 15 14 21 21 C 1.39237 * 120.43264 * 359.70989 * 13 12 11 22 22 C 1.40471 * 118.41015 * 359.72823 * 12 11 10 23 23 N 1.31570 * 119.09373 * 359.97438 * 22 12 11 24 24 H 0.97000 * 120.00425 * 0.27124 * 1 2 3 25 25 H 1.08003 * 120.45160 * 180.27474 * 11 10 9 26 26 H 1.08000 * 119.56209 * 0.02562 * 14 13 12 27 27 H 1.08003 * 124.25117 * 179.97438 * 18 17 16 28 28 H 1.07996 * 122.58610 * 179.97438 * 19 18 17 29 29 H 1.08002 * 120.69782 * 359.97438 * 21 13 12 30 30 H 1.08005 * 120.45304 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 0.0067 5 1 1.8870 2.3936 -1.2158 6 1 1.8769 2.3994 1.2091 7 6 2.0073 -1.2135 0.0058 8 1 3.0873 -1.2134 0.0054 9 6 1.3022 -2.4348 0.0111 10 7 -0.0343 -2.4145 0.0160 11 6 -0.7257 -3.5339 0.0154 12 6 -0.0402 -4.7600 0.0212 13 6 -0.7795 -6.0406 0.0264 14 6 -0.0881 -7.2592 0.0317 15 7 -0.7344 -8.3985 0.0368 16 6 -2.0689 -8.4643 0.0368 17 16 -3.1356 -9.8649 0.0424 18 6 -4.5708 -8.8590 0.0371 19 6 -4.2628 -7.5783 0.0310 20 6 -2.8370 -7.2932 0.0306 21 6 -2.1718 -6.0511 0.0316 22 6 1.3644 -4.7405 0.0217 23 7 1.9881 -3.5820 0.0161 24 1 -0.4851 0.8400 -0.0040 25 1 -1.8054 -3.5103 0.0149 26 1 0.9919 -7.2591 0.0323 27 1 -5.5810 -9.2412 0.0378 28 1 -5.0115 -6.8000 0.0266 29 1 -2.7302 -5.1266 0.0324 30 1 1.9247 -5.6638 0.0257 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242682235.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:20 Heat of formation + Delta-G solvation = 94.827148 kcal Electronic energy + Delta-G solvation = -17957.951562 eV Core-core repulsion = 15037.366057 eV Total energy + Delta-G solvation = -2920.585505 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.047 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.00897 -38.86552 -35.63271 -34.24814 -32.85988 -31.99195 -30.17841 -28.94902 -26.45407 -24.13254 -23.82321 -22.28341 -21.77394 -20.16532 -18.23999 -18.02611 -16.61306 -15.98674 -15.55435 -15.18913 -14.87910 -14.39171 -14.25082 -14.07753 -13.18266 -13.07191 -12.94370 -12.50236 -12.35691 -11.92843 -11.69081 -11.48150 -11.46669 -10.99734 -10.81050 -10.45684 -10.31477 -9.65289 -9.60921 -9.37748 -9.08062 -8.78165 -8.19436 -7.56361 -7.37951 -6.83983 -4.96687 0.76575 1.17494 1.46175 2.06258 2.35912 2.54084 2.79742 2.90150 2.95482 2.96562 3.66333 4.05297 4.45897 4.58712 4.85265 4.99720 5.21911 5.34593 5.54495 5.61977 5.66671 5.68150 5.74741 5.91405 6.05386 6.07722 6.31086 6.44108 6.66398 6.81878 6.88295 7.11284 7.36895 7.86797 8.06740 8.18246 8.26434 8.83450 9.79829 9.98939 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.046682 B = 0.003428 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.658596 B = 8165.803001 C = 8755.615985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.690 5.690 2 C 0.057 3.943 3 Si 0.924 3.076 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.364 4.364 8 H 0.100 0.900 9 C 0.375 3.625 10 N -0.507 5.507 11 C 0.187 3.813 12 C -0.333 4.333 13 C -0.004 4.004 14 C 0.113 3.887 15 N -0.452 5.452 16 C 0.021 3.979 17 S 0.099 5.901 18 C -0.198 4.198 19 C -0.111 4.111 20 C -0.108 4.108 21 C -0.079 4.079 22 C 0.193 3.807 23 N -0.589 5.589 24 H 0.281 0.719 25 H 0.132 0.868 26 H 0.162 0.838 27 H 0.168 0.832 28 H 0.145 0.855 29 H 0.136 0.864 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.120 -8.369 0.029 10.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.309 5.309 2 C -0.172 4.172 3 Si 0.747 3.253 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.396 4.396 8 H 0.118 0.882 9 C 0.144 3.856 10 N -0.222 5.222 11 C 0.008 3.992 12 C -0.344 4.344 13 C -0.010 4.010 14 C -0.057 4.057 15 N -0.161 5.161 16 C -0.222 4.222 17 S 0.358 5.642 18 C -0.332 4.332 19 C -0.142 4.142 20 C -0.118 4.118 21 C -0.107 4.107 22 C 0.017 3.983 23 N -0.307 5.307 24 H 0.093 0.907 25 H 0.149 0.851 26 H 0.179 0.821 27 H 0.185 0.815 28 H 0.162 0.838 29 H 0.154 0.846 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.130 -9.527 0.045 11.329 hybrid contribution -1.023 2.053 -0.015 2.294 sum -7.154 -7.474 0.030 10.346 Atomic orbital electron populations 1.70120 1.07566 1.28951 1.24303 1.26286 0.95197 1.01999 0.93749 0.85978 0.80886 0.79488 0.78974 1.17812 1.19339 1.19340 1.19643 0.95363 0.87842 1.36783 0.88207 1.19968 0.85988 0.90924 0.88713 1.69362 1.08079 1.26668 1.18122 1.23039 0.99066 0.87834 0.89229 1.19526 0.95220 0.92402 1.27240 1.19490 0.92640 0.94045 0.94866 1.22840 0.99949 0.86127 0.96818 1.66953 1.06703 1.30093 1.12349 1.23291 0.94235 0.95785 1.08908 1.83949 0.94254 1.06147 1.79880 1.25023 1.02314 0.97015 1.08848 1.20823 0.94152 0.96663 1.02551 1.19999 0.93270 0.94179 1.04331 1.21316 0.93505 0.95883 0.99998 1.22689 0.90272 0.96015 0.89321 1.68668 1.40644 0.98401 1.22983 0.90744 0.85095 0.82102 0.81505 0.83752 0.84624 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.70 11.40 55.56 0.63 -16.07 16 2 C 0.06 1.33 5.50 -17.34 -0.10 1.23 16 3 Si 0.92 16.92 29.56 -169.99 -5.02 11.89 16 4 H -0.25 -4.61 7.11 56.52 0.40 -4.21 16 5 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 6 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 7 C -0.36 -9.23 9.35 -37.82 -0.35 -9.58 16 8 H 0.10 2.41 7.85 -52.49 -0.41 2.00 16 9 C 0.37 9.90 7.35 -158.16 -1.16 8.74 16 10 N -0.51 -13.07 7.83 -12.41 -0.10 -13.17 16 11 C 0.19 4.15 10.71 -16.82 -0.18 3.97 16 12 C -0.33 -6.87 5.94 -104.27 -0.62 -7.49 16 13 C 0.00 -0.08 5.88 -104.88 -0.62 -0.70 16 14 C 0.11 1.93 10.62 -17.21 -0.18 1.75 16 15 N -0.45 -8.00 10.35 -11.36 -0.12 -8.12 16 16 C 0.02 0.35 7.65 -16.10 -0.12 0.23 16 17 S 0.10 1.29 23.23 -107.50 -2.50 -1.20 16 18 C -0.20 -2.20 11.01 28.85 0.32 -1.88 16 19 C -0.11 -1.38 10.39 -38.62 -0.40 -1.79 16 20 C -0.11 -1.71 6.05 -105.36 -0.64 -2.34 16 21 C -0.08 -1.31 9.61 -38.20 -0.37 -1.68 16 22 C 0.19 4.12 10.71 -16.82 -0.18 3.94 16 23 N -0.59 -14.61 10.34 -12.41 -0.13 -14.73 16 24 H 0.28 6.03 8.29 -40.82 -0.34 5.69 16 25 H 0.13 2.52 6.38 -52.48 -0.33 2.19 16 26 H 0.16 2.38 6.29 -52.49 -0.33 2.05 16 27 H 0.17 1.28 8.06 -52.48 -0.42 0.85 16 28 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.14 2.03 6.36 -52.49 -0.33 1.69 16 30 H 0.13 2.34 6.35 -52.48 -0.33 2.01 16 LS Contribution 282.43 15.07 4.26 4.26 Total: -1.00 -28.98 282.43 -9.30 -38.29 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -1.72 Total: 4.45 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -4.60 Total: -5.59 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.29 Total: -52.09 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.02 Total: 11.89 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.50 Total: -1.20 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.98 -9.30 -38.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242682235.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.113 kcal (2) G-P(sol) polarization free energy of solvation -28.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds