Wall clock time and date at job start Tue Mar 31 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86805 * 119.99993 * 2 1 4 4 H 1.48497 * 109.47322 * 179.72767 * 3 2 1 5 5 H 1.48498 * 109.47165 * 299.72714 * 3 2 1 6 6 H 1.48501 * 109.47099 * 59.72540 * 3 2 1 7 7 C 1.40125 * 120.00113 * 179.72673 * 2 1 3 8 8 H 1.08000 * 119.99551 * 179.97438 * 7 2 1 9 9 C 1.41023 * 119.99917 * 0.02562 * 7 2 1 10 10 N 1.33668 * 119.13081 * 359.72805 * 9 7 2 11 11 C 1.31569 * 120.83067 * 179.71370 * 10 9 7 12 12 C 1.40475 * 119.09119 * 0.55076 * 11 10 9 13 13 C 1.47864 * 120.79301 * 179.74356 * 12 11 10 14 14 C 1.40113 * 120.43281 * 179.97438 * 13 12 11 15 15 N 1.30981 * 120.86554 * 179.97438 * 14 13 12 16 16 C 1.33615 * 122.39039 * 0.02562 * 15 14 13 17 17 S 1.76055 * 130.11654 * 179.97438 * 16 15 14 18 18 C 1.75256 * 92.26799 * 180.02562 * 17 16 15 19 19 C 1.31730 * 111.50174 * 0.02562 * 18 17 16 20 20 C 1.40053 * 120.43445 * 0.02562 * 16 15 14 21 21 C 1.39237 * 120.43264 * 359.70989 * 13 12 11 22 22 C 1.40471 * 118.41015 * 359.72823 * 12 11 10 23 23 N 1.31570 * 119.09373 * 359.97438 * 22 12 11 24 24 H 0.97000 * 120.00425 * 0.27124 * 1 2 3 25 25 H 1.08003 * 120.45160 * 180.27474 * 11 10 9 26 26 H 1.08000 * 119.56209 * 0.02562 * 14 13 12 27 27 H 1.08003 * 124.25117 * 179.97438 * 18 17 16 28 28 H 1.07996 * 122.58610 * 179.97438 * 19 18 17 29 29 H 1.08002 * 120.69782 * 359.97438 * 21 13 12 30 30 H 1.08005 * 120.45304 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 0.0067 5 1 1.8870 2.3936 -1.2158 6 1 1.8769 2.3994 1.2091 7 6 2.0073 -1.2135 0.0058 8 1 3.0873 -1.2134 0.0054 9 6 1.3022 -2.4348 0.0111 10 7 -0.0343 -2.4145 0.0160 11 6 -0.7257 -3.5339 0.0154 12 6 -0.0402 -4.7600 0.0212 13 6 -0.7795 -6.0406 0.0264 14 6 -0.0881 -7.2592 0.0317 15 7 -0.7344 -8.3985 0.0368 16 6 -2.0689 -8.4643 0.0368 17 16 -3.1356 -9.8649 0.0424 18 6 -4.5708 -8.8590 0.0371 19 6 -4.2628 -7.5783 0.0310 20 6 -2.8370 -7.2932 0.0306 21 6 -2.1718 -6.0511 0.0316 22 6 1.3644 -4.7405 0.0217 23 7 1.9881 -3.5820 0.0161 24 1 -0.4851 0.8400 -0.0040 25 1 -1.8054 -3.5103 0.0149 26 1 0.9919 -7.2591 0.0323 27 1 -5.5810 -9.2412 0.0378 28 1 -5.0115 -6.8000 0.0266 29 1 -2.7302 -5.1266 0.0324 30 1 1.9247 -5.6638 0.0257 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242682235.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:20 Heat of formation + Delta-G solvation = 77.954240 kcal Electronic energy + Delta-G solvation = -17958.683227 eV Core-core repulsion = 15037.366057 eV Total energy + Delta-G solvation = -2921.317169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.047 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41291 -40.49304 -36.78960 -35.89327 -34.40921 -33.74473 -31.59039 -30.37106 -28.09136 -25.59246 -25.23531 -23.74783 -23.30059 -21.41925 -19.92886 -19.27934 -18.11143 -17.54456 -16.92443 -16.52731 -16.44301 -15.85949 -15.55964 -15.14354 -14.93701 -14.54204 -14.45092 -13.77500 -13.59472 -13.38215 -13.05503 -13.02243 -12.75948 -12.74955 -11.95589 -11.83160 -11.75958 -11.31620 -11.26456 -11.10114 -10.47217 -10.13508 -9.44726 -9.34116 -8.73851 -8.54553 -6.77470 -0.45631 -0.19112 0.34917 0.86881 1.03148 1.03443 1.35187 1.40124 1.52062 1.57621 2.16339 2.57586 2.88107 3.42615 3.63915 3.75227 3.86256 3.87379 3.98968 4.04737 4.21200 4.31891 4.35729 4.61657 4.76592 4.94901 4.95417 5.01920 5.17779 5.31750 5.46542 5.57633 5.71119 6.04974 6.40340 6.49097 6.75891 7.08321 8.10583 8.24069 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.046682 B = 0.003428 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.658596 B = 8165.803001 C = 8755.615985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.020 3.980 3 Si 1.002 2.998 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.408 4.408 8 H 0.096 0.904 9 C 0.350 3.650 10 N -0.538 5.538 11 C 0.169 3.831 12 C -0.314 4.314 13 C -0.028 4.028 14 C 0.111 3.889 15 N -0.470 5.470 16 C -0.003 4.003 17 S 0.119 5.881 18 C -0.175 4.175 19 C -0.126 4.126 20 C -0.119 4.119 21 C -0.073 4.073 22 C 0.180 3.820 23 N -0.616 5.616 24 H 0.290 0.710 25 H 0.156 0.844 26 H 0.177 0.823 27 H 0.211 0.789 28 H 0.174 0.826 29 H 0.149 0.851 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.166 -9.757 0.035 13.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.206 4.206 3 Si 0.821 3.179 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.185 1.185 7 C -0.441 4.441 8 H 0.114 0.886 9 C 0.117 3.883 10 N -0.255 5.255 11 C -0.007 4.007 12 C -0.325 4.325 13 C -0.034 4.034 14 C -0.058 4.058 15 N -0.179 5.179 16 C -0.245 4.245 17 S 0.378 5.622 18 C -0.308 4.308 19 C -0.155 4.155 20 C -0.129 4.129 21 C -0.100 4.100 22 C 0.006 3.994 23 N -0.335 5.335 24 H 0.101 0.899 25 H 0.173 0.827 26 H 0.194 0.806 27 H 0.227 0.773 28 H 0.191 0.809 29 H 0.167 0.833 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.217 -10.996 0.052 13.727 hybrid contribution -0.654 2.027 -0.015 2.130 sum -8.871 -8.968 0.037 12.615 Atomic orbital electron populations 1.70164 1.09042 1.30364 1.25381 1.27173 0.95972 1.04872 0.92537 0.84852 0.79183 0.74554 0.79340 1.17750 1.18420 1.18451 1.19900 0.95451 0.88983 1.39767 0.88609 1.20361 0.86667 0.91855 0.89414 1.69333 1.08135 1.28275 1.19721 1.23517 1.00261 0.87869 0.89036 1.19696 0.95163 0.93114 1.24524 1.19374 0.93366 0.93106 0.97591 1.23053 1.00790 0.85792 0.96205 1.67038 1.07581 1.30111 1.13208 1.24001 0.94391 0.98045 1.08103 1.83975 0.94272 1.04993 1.78965 1.25546 1.03302 0.96029 1.05972 1.21044 0.92792 0.98137 1.03574 1.20378 0.95226 0.93435 1.03908 1.21557 0.93127 0.97116 0.98209 1.23292 0.91175 0.96330 0.88611 1.68690 1.41281 0.99078 1.24453 0.89897 0.82704 0.80597 0.77262 0.80918 0.83310 0.81386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.46 11.40 21.85 0.25 -36.21 16 2 C 0.02 0.95 5.50 85.32 0.47 1.42 16 3 Si 1.00 35.37 29.56 68.60 2.03 37.40 16 4 H -0.25 -8.79 7.11 99.48 0.71 -8.09 16 5 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 6 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 7 C -0.41 -21.72 9.35 23.41 0.22 -21.50 16 8 H 0.10 4.91 7.85 -2.91 -0.02 4.89 16 9 C 0.35 19.33 7.35 134.88 0.99 20.32 16 10 N -0.54 -28.81 7.83 -193.17 -1.51 -30.32 16 11 C 0.17 7.67 10.71 85.28 0.91 8.58 16 12 C -0.31 -13.06 5.94 -19.64 -0.12 -13.18 16 13 C -0.03 -1.00 5.88 -20.03 -0.12 -1.12 16 14 C 0.11 3.71 10.62 85.27 0.91 4.61 16 15 N -0.47 -16.04 10.35 -189.87 -1.97 -18.01 16 16 C 0.00 -0.08 7.65 84.86 0.65 0.57 16 17 S 0.12 2.73 23.23 -56.49 -1.31 1.42 16 18 C -0.17 -3.04 11.01 67.11 0.74 -2.30 16 19 C -0.13 -2.63 10.39 23.40 0.24 -2.39 16 20 C -0.12 -3.47 6.05 -20.34 -0.12 -3.59 16 21 C -0.07 -2.30 9.61 23.16 0.22 -2.07 16 22 C 0.18 7.79 10.71 85.28 0.91 8.70 16 23 N -0.62 -31.69 10.34 -193.17 -2.00 -33.69 16 24 H 0.29 12.75 8.29 -92.71 -0.77 11.98 16 25 H 0.16 5.97 6.38 -2.91 -0.02 5.96 16 26 H 0.18 5.06 6.29 -2.91 -0.02 5.04 16 27 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 28 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 29 H 0.15 4.19 6.36 -2.91 -0.02 4.17 16 30 H 0.17 5.83 6.35 -2.91 -0.02 5.81 16 Total: -1.00 -65.78 282.43 2.61 -63.17 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 1.21 Total: 18.19 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 5.91 Total: -1.94 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -5.22 Total: -118.23 kcal Atomic # 14 Polarization: 35.37 SS G_CDS: 2.03 Total: 37.40 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.31 Total: 1.42 kcal Total: -65.78 2.61 -63.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242682235.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.126 kcal (2) G-P(sol) polarization free energy of solvation -65.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds