Wall clock time and date at job start Tue Mar 31 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39853 * 119.99811 * 331.70256 * 3 2 1 5 5 C 1.36545 * 120.14565 * 179.74439 * 4 3 2 6 6 C 1.39774 * 120.14895 * 0.22932 * 5 4 3 7 7 C 1.47811 * 119.99856 * 180.02562 * 6 5 4 8 8 C 1.40029 * 119.89106 * 309.72598 * 7 6 5 9 9 C 1.36210 * 120.11758 * 179.71977 * 8 7 6 10 10 C 1.40964 * 119.88125 * 0.55386 * 9 8 7 11 11 C 1.40959 * 120.11016 * 179.69618 * 10 9 8 12 12 H 1.08003 * 120.00424 * 24.72053 * 11 10 9 13 13 C 1.40057 * 120.00385 * 204.71515 * 11 10 9 14 14 N 1.30766 * 119.99852 * 17.95622 * 13 11 10 15 15 Si 1.86802 * 120.00531 * 197.95933 * 13 11 10 16 16 H 1.48499 * 109.47061 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47171 * 119.99715 * 15 13 11 18 18 H 1.48505 * 109.46965 * 239.99986 * 15 13 11 19 19 C 1.40965 * 119.77984 * 359.72153 * 10 9 8 20 20 C 1.36217 * 119.88198 * 359.97438 * 19 10 9 21 21 C 1.39892 * 119.99769 * 0.02562 * 6 5 4 22 22 Cl 1.73600 * 120.07303 * 179.97438 * 21 6 5 23 23 C 1.37765 * 119.85186 * 359.97438 * 21 6 5 24 24 H 1.07998 * 119.92371 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.92379 * 180.25284 * 5 4 3 26 26 H 1.08004 * 119.93793 * 359.97438 * 8 7 6 27 27 H 1.08002 * 120.05430 * 180.27188 * 9 8 7 28 28 H 0.97005 * 120.00682 * 179.97438 * 14 13 11 29 29 H 1.07994 * 120.06246 * 179.97438 * 19 10 9 30 30 H 1.07996 * 119.94364 * 180.02562 * 20 19 10 31 31 H 1.07996 * 120.07238 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2677 -1.0655 0.5742 5 6 4.6331 -1.0705 0.5712 6 6 5.3378 -0.0078 -0.0014 7 6 6.8159 -0.0169 -0.0033 8 6 7.5137 -0.2641 1.1853 9 6 8.8757 -0.2792 1.1877 10 6 9.5829 -0.0338 -0.0068 11 6 10.9925 -0.0420 -0.0085 12 1 11.5302 -0.6017 0.7424 13 6 11.6958 0.6758 -0.9841 14 7 11.0944 1.6173 -1.6636 15 14 13.4930 0.2880 -1.3148 16 1 13.9353 -0.8107 -0.4190 17 1 13.6567 -0.1305 -2.7302 18 1 14.3157 1.4973 -1.0577 19 6 8.8757 0.2202 -1.1995 20 6 7.5136 0.2270 -1.1926 21 6 4.6441 1.0643 -0.5727 22 17 5.5173 2.3854 -1.2838 23 6 3.2665 1.0693 -0.5697 24 1 2.7268 -1.8888 1.0168 25 1 5.1699 -1.8976 1.0120 26 1 6.9710 -0.4472 2.1009 27 1 9.4129 -0.4743 2.1041 28 1 11.5815 2.1148 -2.3391 29 1 9.4129 0.4092 -2.1171 30 1 6.9708 0.4211 -2.1058 31 1 2.7273 1.8953 -1.0094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244327163.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:02 Heat of formation + Delta-G solvation = 56.050504 kcal Electronic energy + Delta-G solvation = -17873.755266 eV Core-core repulsion = 14917.151821 eV Total energy + Delta-G solvation = -2956.603444 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.47706 -37.58687 -36.47052 -35.89495 -34.07307 -31.85583 -30.86637 -29.63438 -29.06401 -25.79771 -23.19415 -22.65928 -20.83579 -20.39966 -18.92591 -17.52299 -16.22001 -15.62604 -15.32909 -14.83658 -14.17333 -14.11268 -13.72124 -13.60683 -13.51163 -12.89516 -12.85556 -12.58856 -12.33772 -12.14984 -11.77396 -11.39191 -11.29919 -11.16129 -11.07811 -10.81009 -10.65493 -10.37213 -9.85279 -9.53843 -9.44080 -8.86849 -8.50369 -7.67397 -7.35749 -7.00217 -4.54147 0.75428 1.34263 2.40799 2.49231 2.76085 2.90067 2.95677 3.00667 3.02612 3.17659 3.75377 3.91328 3.95532 4.41941 4.86808 5.04568 5.20015 5.44428 5.55571 5.73664 5.89045 6.10107 6.19508 6.21696 6.35382 6.52681 6.76877 6.84124 6.84999 7.08556 7.15905 7.44613 7.48211 7.69939 7.86650 7.92903 8.07996 8.42866 8.65170 8.76842 9.91000 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.036659 B = 0.003931 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.611809 B = 7121.234937 C = 7682.264477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.268 3.732 3 C -0.065 4.065 4 C -0.059 4.059 5 C -0.125 4.125 6 C 0.065 3.935 7 C -0.227 4.227 8 C -0.052 4.052 9 C -0.233 4.233 10 C 0.123 3.877 11 C -0.444 4.444 12 H 0.083 0.917 13 C 0.074 3.926 14 N -0.772 5.772 15 Si 0.910 3.090 16 H -0.258 1.258 17 H -0.269 1.269 18 H -0.272 1.272 19 C -0.174 4.174 20 C -0.056 4.056 21 C -0.058 4.058 22 Cl -0.051 7.051 23 C -0.055 4.055 24 H 0.130 0.870 25 H 0.138 0.862 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.285 0.715 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.001 -1.806 0.767 6.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.046 4.046 3 C -0.069 4.069 4 C -0.080 4.080 5 C -0.143 4.143 6 C 0.064 3.936 7 C -0.228 4.228 8 C -0.070 4.070 9 C -0.252 4.252 10 C 0.120 3.880 11 C -0.471 4.471 12 H 0.101 0.899 13 C -0.147 4.147 14 N -0.395 5.395 15 Si 0.734 3.266 16 H -0.181 1.181 17 H -0.194 1.194 18 H -0.197 1.197 19 C -0.193 4.193 20 C -0.074 4.074 21 C -0.085 4.085 22 Cl -0.022 7.022 23 C -0.076 4.076 24 H 0.148 0.852 25 H 0.156 0.844 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.136 0.864 30 H 0.110 0.890 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.631 -1.486 0.519 7.792 hybrid contribution 1.305 0.176 -0.278 1.346 sum -6.326 -1.310 0.241 6.464 Atomic orbital electron populations 1.81219 1.12105 1.08266 1.09764 1.25676 0.92548 0.93299 0.93082 1.15705 0.84022 0.98501 1.08653 1.20821 0.94364 0.96358 0.96412 1.20984 0.92911 0.98675 1.01739 1.19204 0.94595 0.89946 0.89879 1.17875 0.88122 1.21340 0.95504 1.20259 0.94171 0.97597 0.95019 1.20629 0.93273 1.14063 0.97242 1.17743 0.93228 0.86480 0.90560 1.19776 0.91792 1.24932 1.10638 0.89895 1.26051 1.01423 0.93035 0.94200 1.69808 1.38869 1.13663 1.17208 0.86213 0.81236 0.79699 0.79437 1.18142 1.19433 1.19749 1.20955 0.92421 1.07303 0.98652 1.20457 0.94489 0.97201 0.95282 1.20933 0.91260 0.92210 1.04091 1.98385 1.76296 1.45632 1.81886 1.20854 0.92124 0.97274 0.97331 0.85215 0.84385 0.89084 0.88692 0.90384 0.86397 0.88997 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.49 18.54 41.84 0.78 -5.72 16 2 C 0.27 3.51 15.32 -22.47 -0.34 3.17 16 3 C -0.06 -0.80 5.74 -106.78 -0.61 -1.42 16 4 C -0.06 -0.68 9.69 -39.59 -0.38 -1.07 16 5 C -0.12 -1.67 9.43 -39.62 -0.37 -2.05 16 6 C 0.07 1.07 5.47 -104.79 -0.57 0.49 16 7 C -0.23 -4.45 5.13 -104.64 -0.54 -4.99 16 8 C -0.05 -1.04 9.43 -39.64 -0.37 -1.41 16 9 C -0.23 -5.16 9.73 -39.28 -0.38 -5.54 16 10 C 0.12 2.99 5.57 -106.80 -0.60 2.39 16 11 C -0.44 -10.74 9.03 -37.87 -0.34 -11.08 16 12 H 0.08 1.92 7.91 -52.48 -0.42 1.51 16 13 C 0.07 1.69 5.13 -17.32 -0.09 1.60 16 14 N -0.77 -18.38 10.96 55.55 0.61 -17.77 16 15 Si 0.91 17.08 29.60 -169.99 -5.03 12.05 16 16 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 17 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 18 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 19 C -0.17 -4.14 8.63 -39.28 -0.34 -4.48 16 20 C -0.06 -1.18 8.09 -39.64 -0.32 -1.51 16 21 C -0.06 -0.89 6.27 -39.14 -0.25 -1.14 16 22 Cl -0.05 -0.84 25.96 -51.86 -1.35 -2.19 16 23 C -0.05 -0.71 9.53 -39.17 -0.37 -1.08 16 24 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 25 H 0.14 1.68 8.03 -52.49 -0.42 1.26 16 26 H 0.09 1.58 8.03 -52.48 -0.42 1.15 16 27 H 0.09 1.98 8.06 -52.49 -0.42 1.56 16 28 H 0.29 6.12 8.30 -40.82 -0.34 5.79 16 29 H 0.12 2.92 6.16 -52.49 -0.32 2.60 16 30 H 0.09 1.84 7.14 -52.49 -0.37 1.47 16 31 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -24.98 298.31 -8.74 -33.72 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -2.36 Total: 3.51 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -5.89 Total: -28.10 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 1.38 Total: -23.48 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.35 Total: -2.19 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -24.98 -8.74 -33.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244327163.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.770 kcal (2) G-P(sol) polarization free energy of solvation -24.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds