Wall clock time and date at job start Tue Mar 31 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39863 * 119.99276 * 238.78651 * 3 2 1 5 5 C 1.36527 * 120.15096 * 180.27617 * 4 3 2 6 6 C 1.39823 * 120.14368 * 359.50475 * 5 4 3 7 7 C 1.47689 * 120.00738 * 180.25183 * 6 5 4 8 8 C 1.39273 * 120.34388 * 64.96517 * 7 6 5 9 9 C 1.38043 * 119.97198 * 179.70069 * 8 7 6 10 10 C 1.38953 * 120.68852 * 0.61022 * 9 8 7 11 11 C 1.36419 * 120.71070 * 359.66910 * 10 9 8 12 12 C 1.40771 * 119.98929 * 0.02664 * 11 10 9 13 13 C 1.40809 * 120.33980 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00115 * 204.99733 * 13 12 11 15 15 C 1.40125 * 119.99571 * 25.00459 * 13 12 11 16 16 N 1.30734 * 120.00243 * 16.37061 * 15 13 12 17 17 Si 1.86803 * 119.99757 * 196.37811 * 15 13 12 18 18 H 1.48499 * 109.47393 * 89.99608 * 17 15 13 19 19 H 1.48499 * 109.46846 * 210.00046 * 17 15 13 20 20 H 1.48499 * 109.47011 * 329.99472 * 17 15 13 21 21 C 1.39940 * 119.98878 * 0.49481 * 6 5 4 22 22 Cl 1.73602 * 120.07647 * 179.77829 * 21 6 5 23 23 C 1.37738 * 119.84864 * 359.75735 * 21 6 5 24 24 H 1.07997 * 119.92162 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.92277 * 179.72434 * 5 4 3 26 26 H 1.07998 * 120.00893 * 0.02562 * 8 7 6 27 27 H 1.08000 * 119.65048 * 180.32679 * 9 8 7 28 28 H 1.08003 * 119.64617 * 179.69980 * 10 9 8 29 29 H 1.07998 * 120.01012 * 180.02562 * 11 10 9 30 30 H 0.97001 * 119.99942 * 180.02562 * 16 15 13 31 31 H 1.08004 * 120.07464 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2669 0.6287 1.0360 5 6 4.6321 0.6361 1.0363 6 6 5.3379 0.0069 0.0062 7 6 6.8148 0.0120 0.0125 8 6 7.5164 -0.6493 1.0175 9 6 8.8969 -0.6448 1.0124 10 6 9.6002 0.0253 0.0189 11 6 8.9414 0.6870 -0.9756 12 6 7.5339 0.6961 -1.0024 13 6 6.8463 1.3762 -2.0258 14 1 5.8409 1.7323 -1.8566 15 6 7.4667 1.5909 -3.2637 16 7 8.5300 0.9038 -3.5900 17 14 6.7745 2.8592 -4.4478 18 1 7.4036 4.1782 -4.1839 19 1 7.0640 2.4430 -5.8436 20 1 5.3055 2.9643 -4.2573 21 6 4.6447 -0.6233 -1.0333 22 17 5.5187 -1.4002 -2.3164 23 6 3.2673 -0.6261 -1.0359 24 1 2.7253 1.1124 1.8354 25 1 5.1681 1.1261 1.8357 26 1 6.9807 -1.1699 1.7974 27 1 9.4357 -1.1638 1.7913 28 1 10.6801 0.0219 0.0340 29 1 9.4994 1.2038 -1.7424 30 1 8.9596 1.0528 -4.4469 31 1 2.7286 -1.1117 -1.8362 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244330470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:06 Heat of formation + Delta-G solvation = 59.511190 kcal Electronic energy + Delta-G solvation = -18624.708511 eV Core-core repulsion = 15668.255133 eV Total energy + Delta-G solvation = -2956.453378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.30992 -37.47486 -36.23901 -35.53636 -33.81038 -32.05157 -30.64196 -29.66552 -28.53708 -25.49475 -23.55680 -22.34185 -20.91651 -20.10242 -18.72635 -17.39896 -16.02503 -15.40976 -15.21217 -14.59089 -14.32972 -14.00553 -13.53309 -13.51063 -13.46741 -12.74265 -12.72163 -12.53322 -12.27121 -11.77849 -11.59942 -11.29408 -11.20571 -11.00204 -10.85144 -10.70135 -10.51537 -10.08964 -9.80127 -9.54343 -9.25609 -8.64561 -8.21711 -7.51217 -7.39787 -6.88717 -4.47012 0.97756 1.57143 2.63374 2.67698 2.83399 2.99325 3.01652 3.04732 3.16763 3.21172 3.83846 4.09201 4.10957 4.52929 5.05519 5.20052 5.39041 5.54968 5.70386 5.92967 6.07676 6.13063 6.31184 6.37380 6.45808 6.64978 6.78974 6.93444 7.01231 7.11492 7.24777 7.45238 7.60489 7.76210 7.89728 8.00556 8.13477 8.48810 8.72962 8.83106 10.02165 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.007562 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.642538 B = 3701.763435 C = 4782.702920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.270 3.730 3 C -0.058 4.058 4 C -0.068 4.068 5 C -0.120 4.120 6 C 0.072 3.928 7 C -0.211 4.211 8 C -0.061 4.061 9 C -0.246 4.246 10 C -0.098 4.098 11 C -0.158 4.158 12 C 0.143 3.857 13 C -0.435 4.435 14 H 0.078 0.922 15 C 0.084 3.916 16 N -0.777 5.777 17 Si 0.898 3.102 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.259 1.259 21 C -0.030 4.030 22 Cl -0.036 7.036 23 C -0.066 4.066 24 H 0.128 0.872 25 H 0.136 0.864 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.282 0.718 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.008 -0.623 3.287 4.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.044 4.044 3 C -0.062 4.062 4 C -0.089 4.089 5 C -0.138 4.138 6 C 0.070 3.930 7 C -0.213 4.213 8 C -0.079 4.079 9 C -0.266 4.266 10 C -0.116 4.116 11 C -0.177 4.177 12 C 0.140 3.860 13 C -0.463 4.463 14 H 0.096 0.904 15 C -0.137 4.137 16 N -0.401 5.401 17 Si 0.722 3.278 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.183 1.183 21 C -0.057 4.057 22 Cl -0.006 7.006 23 C -0.088 4.088 24 H 0.146 0.854 25 H 0.153 0.847 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.529 -0.739 2.947 5.454 hybrid contribution 0.313 0.448 -0.811 0.978 sum -4.215 -0.291 2.136 4.735 Atomic orbital electron populations 1.81200 1.12137 1.09758 1.08580 1.25718 0.92595 0.92963 0.93113 1.15747 0.83915 1.07387 0.99164 1.20760 0.94374 0.97158 0.96564 1.21018 0.92893 1.00322 0.99577 1.19019 0.94398 0.89525 0.90059 1.18347 0.88552 1.11112 1.03300 1.20470 0.93774 0.97700 0.95936 1.20224 0.93626 1.10355 1.02369 1.20491 0.97509 0.98271 0.95371 1.21085 0.94588 1.03207 0.98836 1.17377 0.91447 0.87715 0.89456 1.19488 1.00912 1.30160 0.95764 0.90378 1.25869 0.94035 0.94770 0.98985 1.69767 1.16766 1.31902 1.21634 0.86441 0.80925 0.81267 0.79147 1.19139 1.20156 1.18261 1.21006 0.90993 1.00556 0.93124 1.98396 1.76098 1.78330 1.47792 1.20886 0.92367 0.98182 0.97351 0.85412 0.84654 0.89244 0.89452 0.89570 0.86210 0.90640 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.11 18.54 41.84 0.78 -6.34 16 2 C 0.27 3.95 15.32 -22.47 -0.34 3.61 16 3 C -0.06 -0.83 5.74 -106.77 -0.61 -1.44 16 4 C -0.07 -0.90 9.68 -39.59 -0.38 -1.29 16 5 C -0.12 -1.82 9.67 -39.61 -0.38 -2.20 16 6 C 0.07 1.32 4.39 -104.81 -0.46 0.86 16 7 C -0.21 -4.45 4.69 -104.23 -0.49 -4.94 16 8 C -0.06 -1.22 9.73 -39.27 -0.38 -1.60 16 9 C -0.25 -5.04 10.03 -39.39 -0.40 -5.44 16 10 C -0.10 -2.11 9.96 -39.97 -0.40 -2.51 16 11 C -0.16 -3.71 8.63 -39.28 -0.34 -4.05 16 12 C 0.14 3.33 5.07 -106.55 -0.54 2.79 16 13 C -0.44 -10.09 6.70 -37.90 -0.25 -10.35 16 14 H 0.08 1.81 7.08 -52.49 -0.37 1.44 16 15 C 0.08 1.89 5.17 -17.31 -0.09 1.80 16 16 N -0.78 -18.12 10.90 55.56 0.61 -17.51 16 17 Si 0.90 17.50 29.59 -169.99 -5.03 12.47 16 18 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 19 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 20 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 21 C -0.03 -0.53 5.68 -39.13 -0.22 -0.75 16 22 Cl -0.04 -0.69 26.15 -51.86 -1.36 -2.05 16 23 C -0.07 -1.01 9.53 -39.17 -0.37 -1.39 16 24 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 25 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 26 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.12 2.92 6.14 -52.49 -0.32 2.60 16 30 H 0.28 6.07 8.29 -40.82 -0.34 5.73 16 31 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 296.35 15.07 4.47 4.47 Total: -1.00 -24.56 296.35 -8.57 -33.13 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -2.36 Total: 2.73 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -5.67 Total: -26.91 kcal Atomic # 7 Polarization: -25.23 SS G_CDS: 1.38 Total: -23.85 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.36 Total: -2.05 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -24.56 -8.57 -33.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244330470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.646 kcal (2) G-P(sol) polarization free energy of solvation -24.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds