Wall clock time and date at job start Tue Mar 31 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39653 * 120.24778 * 357.60008 * 3 2 1 5 5 Cl 1.73599 * 120.02182 * 0.04400 * 4 3 2 6 6 C 1.38122 * 119.95710 * 180.02562 * 4 3 2 7 7 C 1.38562 * 120.45954 * 0.02562 * 6 4 3 8 8 C 1.37943 * 120.50019 * 359.71437 * 7 6 4 9 9 C 1.39521 * 120.02611 * 0.56341 * 8 7 6 10 10 C 1.47604 * 120.22866 * 179.71421 * 9 8 7 11 11 C 1.39297 * 120.34370 * 64.44781 * 10 9 8 12 12 C 1.38036 * 119.97164 * 179.71859 * 11 10 9 13 13 C 1.38964 * 120.69099 * 0.56682 * 12 11 10 14 14 C 1.36423 * 120.71056 * 359.71663 * 13 12 11 15 15 C 1.40770 * 119.99527 * 359.97438 * 14 13 12 16 16 C 1.40801 * 120.33814 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00071 * 205.00541 * 16 15 14 18 18 C 1.40131 * 119.99663 * 25.01386 * 16 15 14 19 19 N 1.30736 * 120.00434 * 17.39916 * 18 16 15 20 20 Si 1.86800 * 119.99883 * 197.39871 * 18 16 15 21 21 H 1.48504 * 109.47179 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47229 * 119.99749 * 20 18 16 23 23 H 1.48497 * 109.47207 * 239.99853 * 20 18 16 24 24 H 1.07997 * 119.77004 * 179.97438 * 6 4 3 25 25 H 1.07998 * 119.74622 * 180.02562 * 7 6 4 26 26 H 1.07993 * 119.98535 * 180.28228 * 8 7 6 27 27 H 1.07998 * 120.01570 * 359.97438 * 11 10 9 28 28 H 1.08000 * 119.65324 * 180.25628 * 12 11 10 29 29 H 1.07996 * 119.64224 * 179.73795 * 13 12 11 30 30 H 1.08000 * 120.00333 * 179.97438 * 14 13 12 31 31 H 0.97000 * 120.00303 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2720 -1.2044 0.0505 5 17 2.4118 -2.7110 0.1125 6 6 4.6532 -1.1967 0.0508 7 6 5.3490 0.0005 0.0017 8 6 4.6728 1.2015 -0.0541 9 6 3.2777 1.2181 -0.0495 10 6 2.5495 2.5009 -0.1026 11 6 2.6493 3.3208 -1.2243 12 6 1.9605 4.5162 -1.2683 13 6 1.1731 4.9208 -0.1971 14 6 1.0599 4.1425 0.9176 15 6 1.7446 2.9147 0.9911 16 6 1.6325 2.1055 2.1379 17 1 2.4183 1.4070 2.3848 18 6 0.5012 2.2064 2.9587 19 7 -0.5853 2.7765 2.5073 20 14 0.5456 1.5262 4.6979 21 1 1.8814 0.9347 4.9642 22 1 0.2876 2.6232 5.6652 23 1 -0.4973 0.4796 4.8469 24 1 5.1946 -2.1304 0.0903 25 1 6.4290 -0.0070 0.0020 26 1 5.2235 2.1295 -0.0967 27 1 3.2621 3.0194 -2.0610 28 1 2.0383 5.1459 -2.1422 29 1 0.6448 5.8614 -0.2478 30 1 0.4452 4.4683 1.7436 31 1 -1.3682 2.8466 3.0756 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244723524.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:17 Heat of formation + Delta-G solvation = 59.150242 kcal Electronic energy + Delta-G solvation = -18927.280841 eV Core-core repulsion = 15970.811811 eV Total energy + Delta-G solvation = -2956.469029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.30898 -37.36146 -36.18287 -35.44038 -33.81338 -31.95184 -30.69538 -29.69803 -28.35229 -25.44957 -23.41009 -22.64876 -20.95024 -20.06029 -18.29185 -17.36478 -16.19464 -15.42504 -15.30140 -14.60748 -14.35467 -13.94126 -13.85466 -13.18231 -12.80540 -12.68723 -12.30864 -12.10933 -11.96372 -11.78449 -11.49220 -11.35211 -11.22360 -11.10635 -10.97899 -10.85100 -10.65193 -10.50323 -9.81049 -9.58359 -9.29181 -8.45054 -8.42294 -7.54436 -7.46295 -6.90029 -4.50607 1.15237 1.47718 2.27513 2.66994 2.85632 3.01687 3.06143 3.15537 3.57494 3.65376 3.84219 4.41574 4.51833 4.64280 5.07412 5.31440 5.46227 5.55266 5.62956 5.90332 6.08932 6.14402 6.32732 6.35609 6.51236 6.65277 6.79609 6.93061 7.04344 7.09194 7.22336 7.42929 7.73656 7.87518 7.98204 8.10878 8.45981 8.46978 8.70694 8.80459 10.01272 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.008709 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.552162 B = 3214.225411 C = 4328.325998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C 0.266 3.734 3 C -0.007 4.007 4 C 0.002 3.998 5 Cl -0.072 7.072 6 C -0.138 4.138 7 C -0.086 4.086 8 C -0.123 4.123 9 C 0.087 3.913 10 C -0.222 4.222 11 C -0.059 4.059 12 C -0.247 4.247 13 C -0.096 4.096 14 C -0.159 4.159 15 C 0.140 3.860 16 C -0.448 4.448 17 H 0.080 0.920 18 C 0.081 3.919 19 N -0.768 5.768 20 Si 0.898 3.102 21 H -0.256 1.256 22 H -0.269 1.269 23 H -0.272 1.272 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.435 -4.781 -1.984 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.075 5.075 2 C -0.050 4.050 3 C -0.011 4.011 4 C -0.027 4.027 5 Cl -0.043 7.043 6 C -0.156 4.156 7 C -0.105 4.105 8 C -0.142 4.142 9 C 0.084 3.916 10 C -0.223 4.223 11 C -0.078 4.078 12 C -0.266 4.266 13 C -0.114 4.114 14 C -0.178 4.178 15 C 0.137 3.863 16 C -0.476 4.476 17 H 0.098 0.902 18 C -0.140 4.140 19 N -0.391 5.391 20 Si 0.722 3.278 21 H -0.179 1.179 22 H -0.194 1.194 23 H -0.197 1.197 24 H 0.151 0.849 25 H 0.149 0.851 26 H 0.151 0.849 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.137 0.863 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.318 -4.874 -1.908 8.997 hybrid contribution 0.193 -0.342 0.866 0.951 sum 7.512 -5.216 -1.043 9.204 Atomic orbital electron populations 1.81052 1.11882 1.07180 1.07409 1.24863 0.92082 0.93707 0.94353 1.16103 0.85657 0.92077 1.07241 1.20857 0.92439 0.85514 1.03930 1.98361 1.77484 1.31716 1.96723 1.20791 0.91007 0.99244 1.04604 1.21109 0.99890 0.91577 0.97951 1.21437 0.93185 0.98320 1.01210 1.18822 0.91971 0.91357 0.89426 1.18371 1.11629 0.94913 0.97423 1.20493 0.97842 0.93890 0.95529 1.20242 1.07207 0.99345 0.99842 1.20504 0.98075 0.98244 0.94624 1.21065 1.03667 0.94623 0.98410 1.17438 0.87737 0.90901 0.90214 1.19557 1.03463 1.18674 1.05902 0.90164 1.25928 0.94524 0.93598 0.99975 1.69773 1.01470 1.31492 1.36384 0.86380 0.80004 0.79571 0.81817 1.17935 1.19380 1.19724 0.84933 0.85142 0.84873 0.89014 0.89277 0.89432 0.86300 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -9.90 18.54 41.84 0.78 -9.12 16 2 C 0.27 6.04 11.81 -22.47 -0.27 5.77 16 3 C -0.01 -0.13 5.23 -106.40 -0.56 -0.69 16 4 C 0.00 0.03 6.34 -39.10 -0.25 -0.22 16 5 Cl -0.07 -1.12 28.02 -51.86 -1.45 -2.58 16 6 C -0.14 -1.82 9.81 -39.50 -0.39 -2.20 16 7 C -0.09 -1.08 10.02 -39.57 -0.40 -1.48 16 8 C -0.12 -1.90 9.73 -39.21 -0.38 -2.28 16 9 C 0.09 1.69 4.40 -104.55 -0.46 1.23 16 10 C -0.22 -4.96 4.73 -104.25 -0.49 -5.45 16 11 C -0.06 -1.25 9.73 -39.26 -0.38 -1.63 16 12 C -0.25 -5.30 10.03 -39.39 -0.39 -5.69 16 13 C -0.10 -2.18 9.96 -39.97 -0.40 -2.58 16 14 C -0.16 -3.95 8.63 -39.28 -0.34 -4.29 16 15 C 0.14 3.48 5.20 -106.54 -0.55 2.93 16 16 C -0.45 -11.16 6.88 -37.90 -0.26 -11.42 16 17 H 0.08 1.97 7.09 -52.49 -0.37 1.60 16 18 C 0.08 1.98 5.14 -17.31 -0.09 1.89 16 19 N -0.77 -19.47 10.96 55.56 0.61 -18.86 16 20 Si 0.90 18.65 29.59 -169.99 -5.03 13.62 16 21 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 25 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 26 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.12 3.06 6.18 -52.49 -0.32 2.74 16 31 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 LS Contribution 295.98 15.07 4.46 4.46 Total: -1.00 -27.52 295.98 -8.61 -36.14 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -2.37 Total: 2.45 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -5.61 Total: -26.12 kcal Atomic # 7 Polarization: -29.36 SS G_CDS: 1.38 Total: -27.98 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.45 Total: -2.58 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.52 -8.61 -36.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244723524.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.286 kcal (2) G-P(sol) polarization free energy of solvation -27.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds