Wall clock time and date at job start Tue Mar 31 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39653 * 120.24778 * 357.60008 * 3 2 1 5 5 Cl 1.73599 * 120.02182 * 0.04400 * 4 3 2 6 6 C 1.38122 * 119.95710 * 180.02562 * 4 3 2 7 7 C 1.38562 * 120.45954 * 0.02562 * 6 4 3 8 8 C 1.37943 * 120.50019 * 359.71437 * 7 6 4 9 9 C 1.39521 * 120.02611 * 0.56341 * 8 7 6 10 10 C 1.47604 * 120.22866 * 179.71421 * 9 8 7 11 11 C 1.39297 * 120.34370 * 64.44781 * 10 9 8 12 12 C 1.38036 * 119.97164 * 179.71859 * 11 10 9 13 13 C 1.38964 * 120.69099 * 0.56682 * 12 11 10 14 14 C 1.36423 * 120.71056 * 359.71663 * 13 12 11 15 15 C 1.40770 * 119.99527 * 359.97438 * 14 13 12 16 16 C 1.40801 * 120.33814 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00071 * 205.00541 * 16 15 14 18 18 C 1.40131 * 119.99663 * 25.01386 * 16 15 14 19 19 N 1.30736 * 120.00434 * 17.39916 * 18 16 15 20 20 Si 1.86800 * 119.99883 * 197.39871 * 18 16 15 21 21 H 1.48504 * 109.47179 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47229 * 119.99749 * 20 18 16 23 23 H 1.48497 * 109.47207 * 239.99853 * 20 18 16 24 24 H 1.07997 * 119.77004 * 179.97438 * 6 4 3 25 25 H 1.07998 * 119.74622 * 180.02562 * 7 6 4 26 26 H 1.07993 * 119.98535 * 180.28228 * 8 7 6 27 27 H 1.07998 * 120.01570 * 359.97438 * 11 10 9 28 28 H 1.08000 * 119.65324 * 180.25628 * 12 11 10 29 29 H 1.07996 * 119.64224 * 179.73795 * 13 12 11 30 30 H 1.08000 * 120.00333 * 179.97438 * 14 13 12 31 31 H 0.97000 * 120.00303 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2720 -1.2044 0.0505 5 17 2.4118 -2.7110 0.1125 6 6 4.6532 -1.1967 0.0508 7 6 5.3490 0.0005 0.0017 8 6 4.6728 1.2015 -0.0541 9 6 3.2777 1.2181 -0.0495 10 6 2.5495 2.5009 -0.1026 11 6 2.6493 3.3208 -1.2243 12 6 1.9605 4.5162 -1.2683 13 6 1.1731 4.9208 -0.1971 14 6 1.0599 4.1425 0.9176 15 6 1.7446 2.9147 0.9911 16 6 1.6325 2.1055 2.1379 17 1 2.4183 1.4070 2.3848 18 6 0.5012 2.2064 2.9587 19 7 -0.5853 2.7765 2.5073 20 14 0.5456 1.5262 4.6979 21 1 1.8814 0.9347 4.9642 22 1 0.2876 2.6232 5.6652 23 1 -0.4973 0.4796 4.8469 24 1 5.1946 -2.1304 0.0903 25 1 6.4290 -0.0070 0.0020 26 1 5.2235 2.1295 -0.0967 27 1 3.2621 3.0194 -2.0610 28 1 2.0383 5.1459 -2.1422 29 1 0.6448 5.8614 -0.2478 30 1 0.4452 4.4683 1.7436 31 1 -1.3682 2.8466 3.0756 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244723524.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:16 Heat of formation + Delta-G solvation = 46.702351 kcal Electronic energy + Delta-G solvation = -18927.820622 eV Core-core repulsion = 15970.811811 eV Total energy + Delta-G solvation = -2957.008811 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.69180 -38.95961 -37.43762 -37.15402 -35.59220 -33.41489 -32.00549 -31.45094 -29.87926 -27.21004 -24.79436 -24.01078 -22.70458 -21.62642 -19.71737 -19.11993 -17.62379 -17.02662 -16.67424 -16.16606 -15.64241 -15.53822 -15.39149 -14.78292 -14.45280 -14.20556 -13.86855 -13.67939 -13.61585 -13.46299 -13.08100 -12.92759 -12.85933 -12.49842 -12.36132 -12.34345 -12.15073 -11.96508 -11.49867 -11.26776 -11.09655 -9.81651 -9.70340 -9.32852 -9.13807 -8.67567 -6.34275 -0.15878 0.23062 0.93200 1.03046 1.16644 1.29873 1.42177 1.46295 1.95884 2.12814 2.18217 2.71214 2.93931 3.17944 3.67521 3.88210 4.20667 4.38375 4.44011 4.47492 4.57241 4.63658 4.80950 5.03275 5.10010 5.21811 5.29050 5.41115 5.42018 5.58111 5.67995 5.84561 6.01805 6.08821 6.20002 6.33129 6.66658 6.77928 6.89737 7.02154 8.25089 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.008709 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.552162 B = 3214.225411 C = 4328.325998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.280 3.720 3 C -0.041 4.041 4 C -0.005 4.005 5 Cl -0.071 7.071 6 C -0.118 4.118 7 C -0.058 4.058 8 C -0.119 4.119 9 C 0.058 3.942 10 C -0.216 4.216 11 C -0.068 4.068 12 C -0.247 4.247 13 C -0.106 4.106 14 C -0.191 4.191 15 C 0.112 3.888 16 C -0.466 4.466 17 H 0.076 0.924 18 C 0.042 3.958 19 N -0.807 5.807 20 Si 0.954 3.046 21 H -0.248 1.248 22 H -0.259 1.259 23 H -0.279 1.279 24 H 0.173 0.827 25 H 0.184 0.816 26 H 0.151 0.849 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.249 -5.950 -2.684 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.035 4.035 3 C -0.045 4.045 4 C -0.034 4.034 5 Cl -0.042 7.042 6 C -0.136 4.136 7 C -0.077 4.077 8 C -0.137 4.137 9 C 0.055 3.945 10 C -0.217 4.217 11 C -0.086 4.086 12 C -0.266 4.266 13 C -0.124 4.124 14 C -0.211 4.211 15 C 0.110 3.890 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.175 4.175 19 N -0.432 5.432 20 Si 0.775 3.225 21 H -0.171 1.171 22 H -0.183 1.183 23 H -0.204 1.204 24 H 0.190 0.810 25 H 0.201 0.799 26 H 0.168 0.832 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.147 -6.038 -2.616 12.944 hybrid contribution -0.797 -0.012 0.913 1.212 sum 10.350 -6.049 -1.703 12.109 Atomic orbital electron populations 1.81031 1.13597 1.08970 1.09978 1.25597 0.93030 0.92150 0.92707 1.16276 0.84000 0.93814 1.10411 1.21049 0.93674 0.84525 1.04126 1.98364 1.77902 1.31256 1.96710 1.21340 0.89441 1.01423 1.01426 1.21666 1.02267 0.89705 0.94045 1.21665 0.91269 1.00576 1.00225 1.18823 0.93701 0.89742 0.92238 1.18769 1.10123 0.96188 0.96649 1.20914 0.97967 0.93595 0.96084 1.20641 1.05996 0.99862 1.00078 1.20767 0.98419 0.98735 0.94491 1.21060 1.05096 0.95895 0.99029 1.17748 0.88840 0.91022 0.91400 1.19567 1.03699 1.19294 1.06870 0.90621 1.26619 0.94067 0.93776 1.03010 1.69849 1.02093 1.33719 1.37538 0.85560 0.79893 0.78963 0.78070 1.17077 1.18291 1.20433 0.80979 0.79868 0.83159 0.85772 0.86375 0.87834 0.88414 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -23.80 18.54 19.00 0.35 -23.45 16 2 C 0.28 13.04 11.81 88.33 1.04 14.09 16 3 C -0.04 -1.58 5.23 -21.02 -0.11 -1.69 16 4 C 0.00 -0.14 6.34 22.58 0.14 0.00 16 5 Cl -0.07 -2.12 28.02 -2.72 -0.08 -2.20 16 6 C -0.12 -2.48 9.81 22.32 0.22 -2.27 16 7 C -0.06 -1.10 10.02 22.28 0.22 -0.87 16 8 C -0.12 -3.18 9.73 22.51 0.22 -2.96 16 9 C 0.06 2.15 4.40 -19.82 -0.09 2.07 16 10 C -0.22 -9.59 4.73 -19.63 -0.09 -9.69 16 11 C -0.07 -2.75 9.73 22.48 0.22 -2.54 16 12 C -0.25 -10.28 10.03 22.40 0.22 -10.05 16 13 C -0.11 -4.87 9.96 22.02 0.22 -4.65 16 14 C -0.19 -9.97 8.63 22.47 0.19 -9.78 16 15 C 0.11 5.77 5.20 -21.11 -0.11 5.66 16 16 C -0.47 -24.02 6.88 23.36 0.16 -23.85 16 17 H 0.08 3.82 7.09 -2.91 -0.02 3.80 16 18 C 0.04 2.16 5.14 85.32 0.44 2.60 16 19 N -0.81 -43.37 10.96 21.86 0.24 -43.13 16 20 Si 0.95 39.42 29.59 68.60 2.03 41.45 16 21 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 23 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 24 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 25 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 26 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 27 H 0.12 4.18 8.06 -2.91 -0.02 4.15 16 28 H 0.12 4.17 8.06 -2.91 -0.02 4.14 16 29 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 30 H 0.10 5.39 6.18 -2.91 -0.02 5.38 16 31 H 0.28 14.14 8.29 -92.71 -0.77 13.37 16 Total: -1.00 -64.78 295.98 6.62 -58.16 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.17 Total: 13.09 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 2.90 Total: -43.93 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: 0.59 Total: -66.58 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.08 Total: -2.20 kcal Total: -64.78 6.62 -58.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244723524.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.864 kcal (2) G-P(sol) polarization free energy of solvation -64.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds