Wall clock time and date at job start Tue Mar 31 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39656 * 120.23934 * 37.47302 * 3 2 1 5 5 Cl 1.73597 * 120.02581 * 359.97438 * 4 3 2 6 6 C 1.38125 * 119.94735 * 180.24955 * 4 3 2 7 7 C 1.38545 * 120.45043 * 359.76631 * 6 4 3 8 8 C 1.37957 * 120.49409 * 0.02562 * 7 6 4 9 9 C 1.39468 * 120.03165 * 359.97438 * 8 7 6 10 10 C 1.47739 * 120.22417 * 180.02562 * 9 8 7 11 11 C 1.40052 * 119.89370 * 130.26299 * 10 9 8 12 12 C 1.36201 * 120.11062 * 180.27699 * 11 10 9 13 13 C 1.40970 * 119.88994 * 359.48267 * 12 11 10 14 14 C 1.40955 * 120.10966 * 180.26985 * 13 12 11 15 15 H 1.07995 * 120.00274 * 24.69348 * 14 13 12 16 16 C 1.40071 * 119.99835 * 204.68667 * 14 13 12 17 17 N 1.30754 * 120.00357 * 17.94749 * 16 14 13 18 18 Si 1.86807 * 119.99874 * 197.94920 * 16 14 13 19 19 H 1.48499 * 109.47113 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47058 * 119.99968 * 18 16 14 21 21 H 1.48499 * 109.46873 * 240.00409 * 18 16 14 22 22 C 1.40976 * 119.77806 * 0.25241 * 13 12 11 23 23 C 1.36194 * 119.88771 * 359.97438 * 22 13 12 24 24 H 1.08002 * 119.77268 * 179.74206 * 6 4 3 25 25 H 1.07997 * 119.75373 * 179.97438 * 7 6 4 26 26 H 1.08000 * 119.98691 * 180.02562 * 8 7 6 27 27 H 1.08001 * 119.94269 * 0.02562 * 11 10 9 28 28 H 1.08004 * 120.05425 * 179.75414 * 12 11 10 29 29 H 0.97001 * 120.00214 * 180.02562 * 17 16 14 30 30 H 1.07998 * 120.04869 * 180.02562 * 22 13 12 31 31 H 1.08004 * 119.94288 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2718 -0.9566 -0.7340 5 17 2.4113 -2.1537 -1.6506 6 6 4.6530 -0.9536 -0.7256 7 6 5.3486 -0.0028 0.0035 8 6 4.6721 0.9539 0.7317 9 6 3.2775 0.9697 0.7376 10 6 2.5486 1.9927 1.5155 11 6 1.5250 2.7320 0.9098 12 6 0.8540 3.6801 1.6211 13 6 1.1840 3.9090 2.9724 14 6 0.4887 4.8850 3.7145 15 1 -0.5118 5.1714 3.4262 16 6 1.0955 5.4833 4.8262 17 7 2.3925 5.4166 4.9780 18 14 0.0517 6.3767 6.0920 19 1 -1.3768 6.3099 5.6917 20 1 0.2250 5.7336 7.4192 21 1 0.4772 7.7972 6.1707 22 6 2.2115 3.1582 3.5791 23 6 2.8797 2.2157 2.8579 24 1 5.1944 -1.6977 -1.2910 25 1 6.4285 -0.0111 0.0024 26 1 5.2226 1.6915 1.2968 27 1 1.2700 2.5529 -0.1243 28 1 0.0674 4.2525 1.1519 29 1 2.8126 5.8307 5.7481 30 1 2.4676 3.3297 4.6141 31 1 3.6673 1.6402 3.3217 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244724250.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:02 Heat of formation + Delta-G solvation = 55.033257 kcal Electronic energy + Delta-G solvation = -18067.594902 eV Core-core repulsion = 15110.947347 eV Total energy + Delta-G solvation = -2956.647555 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.50045 -37.51960 -36.42841 -35.95863 -34.07499 -31.79259 -30.98138 -29.62769 -28.96443 -25.58580 -23.62346 -22.51012 -21.00219 -20.29468 -18.57555 -17.55637 -16.41772 -15.65268 -15.38561 -14.67356 -14.42660 -14.14031 -13.94434 -13.37566 -13.03207 -12.81462 -12.51008 -12.37306 -12.23006 -12.11479 -11.70641 -11.64558 -11.37590 -11.23562 -11.16060 -11.00536 -10.70808 -10.56659 -9.89025 -9.62127 -9.46191 -8.74146 -8.64723 -7.74272 -7.40289 -7.03308 -4.56662 0.86046 1.23317 2.05175 2.55636 2.94462 2.96341 2.99359 3.02055 3.16217 3.26951 3.74859 4.04796 4.21737 4.40798 4.89024 5.13210 5.32789 5.41602 5.47431 5.68149 5.93258 6.10606 6.14676 6.17880 6.39741 6.54960 6.75684 6.83267 6.85445 7.04691 7.12248 7.41177 7.67119 7.83989 7.87202 7.93740 8.05389 8.39422 8.62835 8.73672 9.88710 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.032503 B = 0.004036 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.263324 B = 6935.360215 C = 7586.083963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.265 3.735 3 C -0.044 4.044 4 C 0.012 3.988 5 Cl -0.070 7.070 6 C -0.144 4.144 7 C -0.076 4.076 8 C -0.126 4.126 9 C 0.082 3.918 10 C -0.232 4.232 11 C -0.052 4.052 12 C -0.227 4.227 13 C 0.123 3.877 14 C -0.443 4.443 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.774 5.774 18 Si 0.911 3.089 19 H -0.258 1.258 20 H -0.269 1.269 21 H -0.271 1.271 22 C -0.173 4.173 23 C -0.064 4.064 24 H 0.135 0.865 25 H 0.133 0.867 26 H 0.137 0.863 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.285 0.715 30 H 0.121 0.879 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.212 -7.584 -5.467 11.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.050 4.050 3 C -0.048 4.048 4 C -0.017 4.017 5 Cl -0.041 7.041 6 C -0.163 4.163 7 C -0.095 4.095 8 C -0.144 4.144 9 C 0.079 3.921 10 C -0.233 4.233 11 C -0.070 4.070 12 C -0.247 4.247 13 C 0.119 3.881 14 C -0.470 4.470 15 H 0.102 0.898 16 C -0.146 4.146 17 N -0.397 5.397 18 Si 0.735 3.265 19 H -0.181 1.181 20 H -0.194 1.194 21 H -0.197 1.197 22 C -0.192 4.192 23 C -0.083 4.083 24 H 0.152 0.848 25 H 0.151 0.849 26 H 0.155 0.845 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.138 0.862 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.551 -7.597 -5.393 10.845 hybrid contribution 0.051 0.378 0.469 0.604 sum 5.601 -7.220 -4.924 10.380 Atomic orbital electron populations 1.81130 1.11850 1.08088 1.07956 1.25165 0.92330 0.93554 0.93918 1.16053 0.85058 0.98868 1.04826 1.20835 0.92489 0.91904 0.96466 1.98372 1.77364 1.55671 1.72649 1.20808 0.90966 1.01496 1.03006 1.21184 1.00132 0.93318 0.94903 1.21445 0.93073 0.99553 1.00356 1.19017 0.92421 0.90495 0.90165 1.17887 1.05225 1.05000 0.95203 1.20277 0.94116 0.95443 0.97193 1.20653 1.05173 1.03995 0.94859 1.17751 0.90194 0.89837 0.90271 1.19797 1.01685 1.17330 1.08210 0.89828 1.26054 0.94981 0.95429 0.98161 1.69790 1.10216 1.33028 1.26687 0.86192 0.81268 0.79071 0.79961 1.18110 1.19365 1.19659 1.20977 1.00671 0.97336 1.00206 1.20400 0.98133 0.97164 0.92607 0.84755 0.84898 0.84486 0.89575 0.88660 0.90341 0.86161 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -8.53 18.54 41.84 0.78 -7.76 16 2 C 0.27 5.04 11.69 -22.47 -0.26 4.78 16 3 C -0.04 -0.74 5.74 -106.42 -0.61 -1.35 16 4 C 0.01 0.17 6.34 -39.09 -0.25 -0.08 16 5 Cl -0.07 -0.92 28.02 -51.86 -1.45 -2.38 16 6 C -0.14 -1.63 9.81 -39.51 -0.39 -2.01 16 7 C -0.08 -0.84 10.02 -39.57 -0.40 -1.23 16 8 C -0.13 -1.75 9.49 -39.23 -0.37 -2.12 16 9 C 0.08 1.41 5.49 -104.53 -0.57 0.84 16 10 C -0.23 -4.84 5.13 -104.65 -0.54 -5.37 16 11 C -0.05 -1.16 8.36 -39.63 -0.33 -1.49 16 12 C -0.23 -5.48 9.73 -39.28 -0.38 -5.87 16 13 C 0.12 3.12 5.57 -106.80 -0.60 2.52 16 14 C -0.44 -11.12 9.03 -37.87 -0.34 -11.47 16 15 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 16 C 0.07 1.74 5.13 -17.32 -0.09 1.65 16 17 N -0.77 -18.47 10.96 55.55 0.61 -17.86 16 18 Si 0.91 17.46 29.60 -169.99 -5.03 12.42 16 19 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 20 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 22 C -0.17 -4.20 8.63 -39.28 -0.34 -4.54 16 23 C -0.06 -1.40 9.43 -39.64 -0.37 -1.77 16 24 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 25 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 26 H 0.14 1.79 8.04 -52.49 -0.42 1.37 16 27 H 0.09 1.82 7.26 -52.49 -0.38 1.44 16 28 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 29 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 30 H 0.12 2.99 6.16 -52.49 -0.32 2.67 16 31 H 0.09 1.78 8.03 -52.48 -0.42 1.35 16 LS Contribution 297.92 15.07 4.49 4.49 Total: -1.00 -26.35 297.92 -8.82 -35.16 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -2.37 Total: 3.42 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -5.84 Total: -27.50 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 1.38 Total: -25.62 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.42 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.45 Total: -2.38 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.35 -8.82 -35.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244724250.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.197 kcal (2) G-P(sol) polarization free energy of solvation -26.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds