Wall clock time and date at job start Tue Mar 31 2020 05:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38266 * 119.99157 * 2 1 4 4 C 1.38221 * 120.02141 * 180.02562 * 3 2 1 5 5 C 1.38244 * 120.00745 * 0.23810 * 4 3 2 6 6 C 1.38301 * 119.98797 * 359.46856 * 5 4 3 7 7 Br 1.89105 * 120.00987 * 180.27554 * 6 5 4 8 8 C 1.38191 * 120.00058 * 179.97438 * 2 1 3 9 9 C 1.50703 * 120.00317 * 359.97438 * 8 2 1 10 10 N 1.46500 * 109.46811 * 90.00326 * 9 8 2 11 11 C 1.46504 * 119.99726 * 269.99931 * 10 9 8 12 12 C 1.36940 * 119.99985 * 90.00279 * 10 9 8 13 13 H 1.07994 * 119.99894 * 22.40569 * 12 10 9 14 14 C 1.38808 * 119.99652 * 202.40574 * 12 10 9 15 15 N 1.31618 * 120.00451 * 13.50654 * 14 12 10 16 16 Si 1.86804 * 119.99830 * 193.50581 * 14 12 10 17 17 H 1.48502 * 109.47316 * 84.86781 * 16 14 12 18 18 H 1.48496 * 109.47379 * 204.86846 * 16 14 12 19 19 H 1.48496 * 109.47096 * 324.86686 * 16 14 12 20 20 H 1.09001 * 109.46792 * 89.99755 * 1 2 3 21 21 H 1.08997 * 109.46739 * 209.99377 * 1 2 3 22 22 H 1.08994 * 109.47303 * 329.99938 * 1 2 3 23 23 H 1.08003 * 119.99221 * 0.02562 * 3 2 1 24 24 H 1.07994 * 119.99826 * 179.97438 * 4 3 2 25 25 H 1.08004 * 120.00477 * 179.74549 * 5 4 3 26 26 H 1.09000 * 109.47235 * 210.00357 * 9 8 2 27 27 H 1.09001 * 109.47345 * 330.00580 * 9 8 2 28 28 H 1.09001 * 109.46655 * 95.05306 * 11 10 9 29 29 H 1.09001 * 109.46862 * 215.04600 * 11 10 9 30 30 H 1.08996 * 109.47276 * 335.04645 * 11 10 9 31 31 H 0.97006 * 120.00021 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1982 -0.0005 5 6 4.2724 0.0015 -0.0060 6 6 3.5814 -1.1966 0.0001 7 35 4.5275 -2.8340 0.0004 8 6 2.1980 -1.1968 0.0005 9 6 1.4445 -2.5019 0.0017 10 7 1.2000 -2.9258 -1.3792 11 6 -0.0212 -2.5034 -2.0696 12 6 2.1127 -3.7168 -2.0245 13 1 2.8040 -4.3192 -1.4540 14 6 2.1493 -3.7442 -3.4118 15 7 1.5052 -2.8298 -4.1054 16 14 3.1129 -5.0792 -4.2944 17 1 2.2667 -6.2918 -4.4319 18 1 3.5078 -4.5959 -5.6419 19 1 4.3301 -5.4111 -3.5113 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5137 22 1 -0.3633 0.8899 0.5138 23 1 1.6579 2.1327 0.0004 24 1 4.1198 2.1338 -0.0010 25 1 5.3524 0.0021 -0.0106 26 1 2.0338 -3.2612 0.5159 27 1 0.4923 -2.3713 0.5157 28 1 0.1846 -1.6083 -2.6566 29 1 -0.3594 -3.3014 -2.7305 30 1 -0.7970 -2.2862 -1.3355 31 1 1.5311 -2.8488 -5.0749 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248618977.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:47 Heat of formation + Delta-G solvation = 50.166750 kcal Electronic energy + Delta-G solvation = -15240.593622 eV Core-core repulsion = 12761.998434 eV Total energy + Delta-G solvation = -2478.595188 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.08871 -35.49497 -32.71750 -32.11609 -30.44150 -28.87400 -26.98549 -25.64148 -25.38197 -21.91733 -20.94779 -19.85918 -16.71021 -15.96140 -15.23006 -14.79899 -14.36802 -13.90146 -13.30922 -12.85597 -12.72095 -12.62992 -12.06711 -11.99548 -11.82872 -11.13375 -10.90338 -10.82288 -10.52538 -10.45853 -10.25731 -10.15760 -9.94751 -9.78822 -9.13112 -8.46509 -8.09626 -7.95142 -6.71626 -5.67387 -3.09018 1.69572 1.85534 2.41132 3.42479 3.48617 3.49798 4.13333 4.57962 5.24629 5.26797 5.42738 5.55857 5.65982 5.68739 5.77611 5.98126 5.99923 6.14697 6.31253 6.43986 6.50496 6.68354 6.74485 6.79554 6.88551 7.16847 7.37700 7.40511 7.74754 7.93059 8.43638 9.28496 9.89606 10.37791 11.37729 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.017509 B = 0.010584 C = 0.007764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.792943 B = 2644.909141 C = 3605.590415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 C -0.113 4.113 4 C -0.134 4.134 5 C -0.104 4.104 6 C -0.068 4.068 7 Br -0.052 7.052 8 C -0.054 4.054 9 C 0.167 3.833 10 N -0.582 5.582 11 C 0.162 3.838 12 C -0.240 4.240 13 H 0.079 0.921 14 C 0.002 3.998 15 N -0.907 5.907 16 Si 0.897 3.103 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.278 1.278 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.116 0.884 24 H 0.119 0.881 25 H 0.120 0.880 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.030 0.970 29 H 0.043 0.957 30 H 0.000 1.000 31 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 5.371 9.950 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 C -0.132 4.132 4 C -0.154 4.154 5 C -0.124 4.124 6 C -0.149 4.149 7 Br 0.034 6.966 8 C -0.060 4.060 9 C 0.040 3.960 10 N -0.302 5.302 11 C 0.018 3.982 12 C -0.369 4.369 13 H 0.097 0.903 14 C -0.196 4.196 15 N -0.552 5.552 16 Si 0.727 3.273 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.203 1.203 20 H 0.093 0.907 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.134 0.866 24 H 0.137 0.863 25 H 0.138 0.862 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.018 0.982 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.557 4.702 9.727 11.103 hybrid contribution 0.543 -0.025 -0.919 1.067 sum 3.099 4.677 8.808 10.444 Atomic orbital electron populations 1.20869 0.91358 1.01835 1.02742 1.19658 0.95999 0.92122 1.00216 1.20983 0.94183 0.97280 1.00738 1.20854 0.94252 0.97046 1.03238 1.20948 0.99428 0.91348 1.00636 1.21560 0.94410 0.91245 1.07674 1.96581 1.73658 1.28902 1.97498 1.20949 0.92309 0.98247 0.94530 1.20242 0.96597 0.90037 0.89124 1.44148 1.19984 1.56042 1.09980 1.20892 0.84739 0.99582 0.93020 1.19418 1.13102 1.15495 0.88933 0.90287 1.24995 0.99614 0.98021 0.96940 1.70065 1.46226 1.33333 1.05558 0.86367 0.80006 0.81757 0.79161 1.21515 1.21835 1.20345 0.90691 0.91223 0.92521 0.86571 0.86348 0.86188 0.91869 0.92863 0.95164 0.93815 0.98195 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 8.60 36.01 0.31 -1.41 16 2 C -0.08 -1.40 5.88 -104.63 -0.62 -2.01 16 3 C -0.11 -1.82 9.70 -39.58 -0.38 -2.20 16 4 C -0.13 -2.11 10.05 -39.59 -0.40 -2.51 16 5 C -0.10 -1.80 9.79 -39.56 -0.39 -2.19 16 6 C -0.07 -1.35 6.22 -39.52 -0.25 -1.60 16 7 Br -0.05 -1.01 29.54 -68.01 -2.01 -3.02 16 8 C -0.05 -1.09 5.46 -104.60 -0.57 -1.66 16 9 C 0.17 3.48 5.01 -5.19 -0.03 3.46 16 10 N -0.58 -14.35 2.91 -182.50 -0.53 -14.88 16 11 C 0.16 3.90 7.89 59.85 0.47 4.37 16 12 C -0.24 -6.45 8.68 -15.06 -0.13 -6.58 16 13 H 0.08 2.09 6.59 -52.49 -0.35 1.75 16 14 C 0.00 0.07 5.09 -17.43 -0.09 -0.02 16 15 N -0.91 -26.53 10.70 55.49 0.59 -25.94 16 16 Si 0.90 22.30 29.57 -169.99 -5.03 17.27 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H 0.07 1.25 7.37 -51.93 -0.38 0.86 16 21 H 0.07 1.05 5.83 -51.93 -0.30 0.74 16 22 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 23 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 24 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 25 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 26 H 0.06 1.31 6.54 -51.93 -0.34 0.97 16 27 H 0.05 0.99 5.66 -51.93 -0.29 0.70 16 28 H 0.03 0.80 7.24 -51.93 -0.38 0.42 16 29 H 0.04 1.14 7.31 -51.93 -0.38 0.76 16 30 H 0.00 -0.01 7.17 -51.93 -0.37 -0.38 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 LS Contribution 270.70 15.07 4.08 4.08 Total: -1.00 -29.76 270.70 -8.57 -38.33 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -3.62 Total: -3.50 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -2.06 Total: -12.34 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.06 Total: -40.82 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -2.01 Total: -3.02 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.76 -8.57 -38.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248618977.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.501 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds