Wall clock time and date at job start Tue Mar 31 2020 05:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38266 * 119.99157 * 2 1 4 4 C 1.38221 * 120.02141 * 180.02562 * 3 2 1 5 5 C 1.38244 * 120.00745 * 0.23810 * 4 3 2 6 6 C 1.38301 * 119.98797 * 359.46856 * 5 4 3 7 7 Br 1.89105 * 120.00987 * 180.27554 * 6 5 4 8 8 C 1.38191 * 120.00058 * 179.97438 * 2 1 3 9 9 C 1.50703 * 120.00317 * 359.97438 * 8 2 1 10 10 N 1.46500 * 109.46811 * 90.00326 * 9 8 2 11 11 C 1.46504 * 119.99726 * 269.99931 * 10 9 8 12 12 C 1.36940 * 119.99985 * 90.00279 * 10 9 8 13 13 H 1.07994 * 119.99894 * 22.40569 * 12 10 9 14 14 C 1.38808 * 119.99652 * 202.40574 * 12 10 9 15 15 N 1.31618 * 120.00451 * 13.50654 * 14 12 10 16 16 Si 1.86804 * 119.99830 * 193.50581 * 14 12 10 17 17 H 1.48502 * 109.47316 * 84.86781 * 16 14 12 18 18 H 1.48496 * 109.47379 * 204.86846 * 16 14 12 19 19 H 1.48496 * 109.47096 * 324.86686 * 16 14 12 20 20 H 1.09001 * 109.46792 * 89.99755 * 1 2 3 21 21 H 1.08997 * 109.46739 * 209.99377 * 1 2 3 22 22 H 1.08994 * 109.47303 * 329.99938 * 1 2 3 23 23 H 1.08003 * 119.99221 * 0.02562 * 3 2 1 24 24 H 1.07994 * 119.99826 * 179.97438 * 4 3 2 25 25 H 1.08004 * 120.00477 * 179.74549 * 5 4 3 26 26 H 1.09000 * 109.47235 * 210.00357 * 9 8 2 27 27 H 1.09001 * 109.47345 * 330.00580 * 9 8 2 28 28 H 1.09001 * 109.46655 * 95.05306 * 11 10 9 29 29 H 1.09001 * 109.46862 * 215.04600 * 11 10 9 30 30 H 1.08996 * 109.47276 * 335.04645 * 11 10 9 31 31 H 0.97006 * 120.00021 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1982 -0.0005 5 6 4.2724 0.0015 -0.0060 6 6 3.5814 -1.1966 0.0001 7 35 4.5275 -2.8340 0.0004 8 6 2.1980 -1.1968 0.0005 9 6 1.4445 -2.5019 0.0017 10 7 1.2000 -2.9258 -1.3792 11 6 -0.0212 -2.5034 -2.0696 12 6 2.1127 -3.7168 -2.0245 13 1 2.8040 -4.3192 -1.4540 14 6 2.1493 -3.7442 -3.4118 15 7 1.5052 -2.8298 -4.1054 16 14 3.1129 -5.0792 -4.2944 17 1 2.2667 -6.2918 -4.4319 18 1 3.5078 -4.5959 -5.6419 19 1 4.3301 -5.4111 -3.5113 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5137 22 1 -0.3633 0.8899 0.5138 23 1 1.6579 2.1327 0.0004 24 1 4.1198 2.1338 -0.0010 25 1 5.3524 0.0021 -0.0106 26 1 2.0338 -3.2612 0.5159 27 1 0.4923 -2.3713 0.5157 28 1 0.1846 -1.6083 -2.6566 29 1 -0.3594 -3.3014 -2.7305 30 1 -0.7970 -2.2862 -1.3355 31 1 1.5311 -2.8488 -5.0749 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248618977.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:47 Heat of formation + Delta-G solvation = 34.295363 kcal Electronic energy + Delta-G solvation = -15241.281857 eV Core-core repulsion = 12761.998434 eV Total energy + Delta-G solvation = -2479.283423 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47122 -37.30175 -34.16383 -33.72695 -32.17743 -30.37878 -28.46763 -27.51393 -26.94601 -23.66352 -22.34146 -21.37587 -18.68444 -17.37210 -16.70694 -16.62224 -15.79129 -15.60309 -15.09952 -14.53782 -14.11862 -14.01876 -13.57387 -13.44813 -13.30183 -12.84268 -12.78660 -12.60212 -12.33093 -12.07875 -11.94700 -11.80297 -11.61586 -11.38912 -10.77554 -10.47684 -9.47577 -9.36685 -8.70005 -7.75010 -5.18668 0.33457 0.50024 0.95712 1.44825 1.45674 1.52634 2.54151 2.80157 3.41214 3.89479 3.93958 4.06882 4.18815 4.30875 4.46516 4.68139 4.74171 4.83455 4.88001 4.97974 5.04372 5.09391 5.33062 5.39932 5.45838 5.54158 5.75351 5.77827 5.82122 6.10300 6.40872 7.23818 7.93056 8.36115 9.28739 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.017509 B = 0.010584 C = 0.007764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.792943 B = 2644.909141 C = 3605.590415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.090 4.090 3 C -0.114 4.114 4 C -0.124 4.124 5 C -0.116 4.116 6 C -0.091 4.091 7 Br -0.063 7.063 8 C -0.082 4.082 9 C 0.169 3.831 10 N -0.598 5.598 11 C 0.181 3.819 12 C -0.230 4.230 13 H 0.079 0.921 14 C -0.051 4.051 15 N -0.939 5.939 16 Si 0.944 3.056 17 H -0.286 1.286 18 H -0.299 1.299 19 H -0.272 1.272 20 H 0.060 0.940 21 H 0.069 0.931 22 H 0.089 0.911 23 H 0.151 0.849 24 H 0.157 0.843 25 H 0.136 0.864 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.003 0.997 29 H 0.014 0.986 30 H 0.035 0.965 31 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.409 6.985 11.271 13.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.091 4.091 3 C -0.132 4.132 4 C -0.143 4.143 5 C -0.136 4.136 6 C -0.171 4.171 7 Br 0.023 6.977 8 C -0.088 4.088 9 C 0.043 3.957 10 N -0.319 5.319 11 C 0.036 3.964 12 C -0.360 4.360 13 H 0.097 0.903 14 C -0.245 4.245 15 N -0.587 5.587 16 Si 0.774 3.226 17 H -0.213 1.213 18 H -0.226 1.226 19 H -0.197 1.197 20 H 0.079 0.921 21 H 0.088 0.912 22 H 0.108 0.892 23 H 0.169 0.831 24 H 0.174 0.826 25 H 0.154 0.846 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.021 0.979 29 H 0.032 0.968 30 H 0.053 0.947 31 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.728 6.322 11.101 13.063 hybrid contribution 0.508 -0.404 -1.145 1.317 sum 3.236 5.918 9.955 12.025 Atomic orbital electron populations 1.20870 0.89811 1.03559 1.02219 1.20049 0.97389 0.92131 0.99558 1.21439 0.94635 0.97971 0.99144 1.21358 0.94491 0.97875 1.00537 1.21271 1.00529 0.91225 1.00566 1.21840 0.94687 0.91798 1.08765 1.96547 1.73715 1.29868 1.97566 1.20878 0.92632 0.98418 0.96826 1.20242 0.97841 0.90671 0.86927 1.44232 1.19911 1.56878 1.10881 1.20593 0.85546 0.97127 0.93128 1.19608 1.12190 1.15241 0.88989 0.90294 1.25555 1.01318 0.99897 0.97778 1.70215 1.48477 1.35058 1.04953 0.85596 0.79196 0.79915 0.77868 1.21287 1.22633 1.19693 0.92143 0.91191 0.89201 0.83104 0.82567 0.84571 0.92353 0.90764 0.97905 0.96768 0.94695 0.94834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.03 8.60 71.24 0.61 -2.42 16 2 C -0.09 -2.98 5.88 -19.87 -0.12 -3.10 16 3 C -0.11 -3.20 9.70 22.27 0.22 -2.99 16 4 C -0.12 -3.40 10.05 22.27 0.22 -3.17 16 5 C -0.12 -3.76 9.79 22.29 0.22 -3.54 16 6 C -0.09 -3.47 6.22 22.31 0.14 -3.33 16 7 Br -0.06 -2.40 29.54 -20.37 -0.60 -3.01 16 8 C -0.08 -3.20 5.46 -19.85 -0.11 -3.31 16 9 C 0.17 6.90 5.01 85.63 0.43 7.33 16 10 N -0.60 -29.43 2.91 -731.30 -2.13 -31.56 16 11 C 0.18 8.74 7.89 127.77 1.01 9.74 16 12 C -0.23 -12.42 8.68 84.03 0.73 -11.69 16 13 H 0.08 4.20 6.59 -2.91 -0.02 4.18 16 14 C -0.05 -2.90 5.09 84.86 0.43 -2.47 16 15 N -0.94 -56.24 10.70 21.65 0.23 -56.01 16 16 Si 0.94 46.42 29.57 68.60 2.03 48.45 16 17 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 18 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 19 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 20 H 0.06 1.90 7.37 -2.39 -0.02 1.88 16 21 H 0.07 1.92 5.83 -2.39 -0.01 1.91 16 22 H 0.09 1.89 8.08 -2.39 -0.02 1.87 16 23 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 24 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 25 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 26 H 0.06 2.40 6.54 -2.39 -0.02 2.39 16 27 H 0.07 2.65 5.66 -2.39 -0.01 2.64 16 28 H 0.00 0.14 7.24 -2.39 -0.02 0.13 16 29 H 0.01 0.73 7.31 -2.39 -0.02 0.71 16 30 H 0.03 1.40 7.17 -2.39 -0.02 1.38 16 31 H 0.24 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -64.35 270.70 4.44 -59.91 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: 1.13 Total: 1.17 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 3.78 Total: -18.95 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -1.89 Total: -87.57 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Atomic # 35 Polarization: -2.40 SS G_CDS: -0.60 Total: -3.01 kcal Total: -64.35 4.44 -59.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248618977.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.204 kcal (2) G-P(sol) polarization free energy of solvation -64.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds