Wall clock time and date at job start Tue Mar 31 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30216 * 126.78967 * 2 1 4 4 O 1.20920 * 111.64740 * 179.97438 * 3 2 1 5 5 C 1.34065 * 111.55173 * 359.97438 * 4 3 2 6 6 Cl 1.73599 * 126.79690 * 179.97438 * 5 4 3 7 7 C 1.35677 * 106.40859 * 0.02562 * 5 4 3 8 8 C 1.50693 * 128.01626 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47194 * 90.02154 * 8 7 5 10 10 O 1.21294 * 119.99924 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00311 * 179.97438 * 9 8 7 12 12 C 1.37098 * 120.00411 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99651 * 20.21485 * 12 11 9 14 14 C 1.38954 * 120.00074 * 200.22424 * 12 11 9 15 15 N 1.31406 * 119.99951 * 21.41770 * 14 12 11 16 16 Si 1.86799 * 119.99555 * 201.42072 * 14 12 11 17 17 H 1.48507 * 109.46971 * 89.99963 * 16 14 12 18 18 H 1.48496 * 109.47206 * 209.99658 * 16 14 12 19 19 H 1.48494 * 109.47445 * 329.99742 * 16 14 12 20 20 C 1.46498 * 119.99846 * 0.02562 * 11 9 8 21 21 C 1.47198 * 109.47257 * 83.95032 * 20 11 9 22 22 N 6.57696 * 107.57396 * 182.49782 * 2 1 3 23 23 H 1.08997 * 109.47553 * 90.02175 * 1 2 3 24 24 H 1.09000 * 109.47055 * 210.02484 * 1 2 3 25 25 H 1.08994 * 109.47088 * 330.02180 * 1 2 3 26 26 H 1.08996 * 109.47326 * 210.02352 * 8 7 5 27 27 H 1.09000 * 109.47034 * 330.02222 * 8 7 5 28 28 H 0.97001 * 119.99737 * 180.02562 * 15 14 12 29 29 H 1.09000 * 109.47309 * 203.94744 * 20 11 9 30 30 H 1.09000 * 109.47472 * 323.94997 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7270 0.0005 5 6 3.6037 -0.6053 0.0015 6 17 5.1012 -1.4835 0.0018 7 6 2.3531 -1.1315 0.0010 8 6 1.9580 -2.5857 0.0011 9 6 1.8251 -3.0700 1.4220 10 8 2.0305 -2.3089 2.3438 11 7 1.4770 -4.3485 1.6684 12 6 1.3556 -4.7890 2.9610 13 1 1.2127 -4.0790 3.7622 14 6 1.4164 -6.1488 3.2403 15 7 1.9921 -6.9690 2.3902 16 14 0.6797 -6.8108 4.8241 17 1 -0.7418 -7.1744 4.5947 18 1 1.4349 -8.0142 5.2561 19 1 0.7603 -5.7702 5.8804 20 6 1.2284 -5.2676 0.5550 21 6 2.5061 -5.8304 0.0887 22 7 3.4928 -6.2640 -0.2733 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8901 0.5135 26 1 1.0044 -2.7032 -0.5135 27 1 2.7221 -3.1698 -0.5119 28 1 2.0342 -7.9183 2.5850 29 1 0.5762 -6.0746 0.8887 30 1 0.7496 -4.7277 -0.2619 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251456471.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:10 Heat of formation + Delta-G solvation = 44.097097 kcal Electronic energy + Delta-G solvation = -19896.216965 eV Core-core repulsion = 16528.245919 eV Total energy + Delta-G solvation = -3367.971046 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.07449 -40.62376 -38.27711 -37.60653 -36.43437 -35.96002 -33.86071 -33.26356 -30.20619 -29.53533 -28.98754 -26.49067 -23.38195 -22.48219 -20.89143 -19.71585 -18.96566 -18.70928 -18.13466 -17.88044 -16.51362 -16.46743 -16.01467 -15.49409 -14.82136 -14.64386 -14.41400 -14.16077 -14.08424 -13.84028 -13.57742 -13.46723 -13.37482 -13.18129 -13.04301 -12.91884 -12.74693 -12.29179 -12.13984 -12.05515 -11.91466 -11.07909 -11.01102 -10.55934 -10.15956 -9.87614 -8.37782 -5.94323 -0.02812 0.17146 1.03894 1.41774 1.51212 1.60094 1.84722 2.09904 2.30650 2.39332 2.53224 3.01587 3.06188 3.19968 3.53057 3.65398 3.80952 3.91209 4.12230 4.45158 4.54701 4.68346 4.75722 4.79005 4.84357 4.94113 5.24266 5.52416 6.07549 6.42720 6.97972 7.07433 7.15829 7.37873 7.94618 8.65836 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.005821 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.870308 B = 4808.703540 C = 5334.656284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.048 3.952 3 N -0.371 5.371 4 O 0.092 5.908 5 C -0.003 4.003 6 Cl 0.049 6.951 7 C -0.146 4.146 8 C -0.059 4.059 9 C 0.458 3.542 10 O -0.609 6.609 11 N -0.452 5.452 12 C -0.337 4.337 13 H 0.081 0.919 14 C 0.009 3.991 15 N -0.890 5.890 16 Si 0.981 3.019 17 H -0.257 1.257 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.218 3.782 21 C 0.255 3.745 22 N -0.507 5.507 23 H 0.116 0.884 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.152 0.848 27 H 0.101 0.899 28 H 0.273 0.727 29 H 0.123 0.877 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 6.865 -8.719 12.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 N -0.082 5.082 4 O 0.029 5.971 5 C -0.092 4.092 6 Cl 0.078 6.922 7 C -0.151 4.151 8 C -0.099 4.099 9 C 0.248 3.752 10 O -0.493 6.493 11 N -0.172 5.172 12 C -0.464 4.464 13 H 0.099 0.901 14 C -0.194 4.194 15 N -0.529 5.529 16 Si 0.807 3.193 17 H -0.182 1.182 18 H -0.216 1.216 19 H -0.205 1.205 20 C 0.092 3.908 21 C -0.063 4.063 22 N -0.188 5.188 23 H 0.134 0.866 24 H 0.109 0.891 25 H 0.102 0.898 26 H 0.170 0.830 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.141 0.859 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.182 7.617 -8.796 12.365 hybrid contribution 0.258 -1.336 1.348 1.915 sum -3.924 6.282 -7.448 10.504 Atomic orbital electron populations 1.20425 0.82587 1.04900 1.05495 1.23840 1.00678 0.86952 0.99652 1.73848 0.88668 1.23682 1.21971 1.84827 1.22434 1.20694 1.69102 1.24685 0.91500 0.84925 1.08130 1.98453 1.28242 1.68857 1.96680 1.20439 0.90072 0.97730 1.06909 1.20067 1.06308 0.88481 0.95024 1.20622 0.80526 0.83054 0.90968 1.90558 1.54724 1.56095 1.47945 1.43739 1.59906 1.07725 1.05820 1.19552 1.50030 0.91823 0.85007 0.90136 1.25821 0.95786 0.96040 1.01749 1.69918 1.38909 1.05085 1.38948 0.85098 0.79056 0.77002 0.78186 1.18172 1.21619 1.20531 1.19154 0.87066 0.94876 0.89752 1.29836 0.95228 0.91580 0.89651 1.80953 1.12485 1.11219 1.14135 0.86616 0.89093 0.89790 0.83044 0.88054 0.91670 0.85889 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 10.39 71.23 0.74 -0.79 16 2 C 0.05 1.38 7.32 43.55 0.32 1.70 16 3 N -0.37 -11.92 12.07 -49.42 -0.60 -12.52 16 4 O 0.09 3.02 11.20 71.40 0.80 3.82 16 5 C 0.00 -0.08 8.12 67.23 0.55 0.46 16 6 Cl 0.05 1.53 29.23 -2.72 -0.08 1.45 16 7 C -0.15 -4.61 4.82 -19.71 -0.10 -4.70 16 8 C -0.06 -1.73 4.71 29.10 0.14 -1.59 16 9 C 0.46 18.82 7.56 87.66 0.66 19.48 16 10 O -0.61 -30.65 15.71 -3.07 -0.05 -30.70 16 11 N -0.45 -19.10 2.60 -645.42 -1.68 -20.77 16 12 C -0.34 -16.53 9.27 84.04 0.78 -15.75 16 13 H 0.08 4.34 7.43 -2.91 -0.02 4.31 16 14 C 0.01 0.40 4.84 84.93 0.41 0.82 16 15 N -0.89 -42.70 9.58 21.66 0.21 -42.49 16 16 Si 0.98 38.69 29.60 68.60 2.03 40.72 16 17 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 18 H -0.29 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 20 C 0.22 7.32 4.91 84.57 0.42 7.73 16 21 C 0.25 10.12 12.83 89.43 1.15 11.27 16 22 N -0.51 -22.45 18.54 20.02 0.37 -22.08 16 23 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.15 2.91 7.42 -2.39 -0.02 2.90 16 27 H 0.10 2.95 7.49 -2.39 -0.02 2.93 16 28 H 0.27 12.78 8.31 -92.71 -0.77 12.01 16 29 H 0.12 4.27 6.63 -2.39 -0.02 4.25 16 30 H 0.15 3.06 6.69 -2.39 -0.02 3.04 16 Total: -1.00 -67.24 293.00 7.27 -59.97 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: 1.20 Total: 4.00 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 5.06 Total: 18.62 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -1.69 Total: -97.87 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: 0.75 Total: -26.88 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Atomic # 17 Polarization: 1.53 SS G_CDS: -0.08 Total: 1.45 kcal Total: -67.24 7.27 -59.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251456471.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.063 kcal (2) G-P(sol) polarization free energy of solvation -67.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds