Wall clock time and date at job start Tue Mar 31 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 C 1.50699 * 109.46831 * 175.00162 * 4 2 1 6 6 C 1.38258 * 119.99849 * 90.00805 * 5 4 2 7 7 C 1.38219 * 120.02321 * 179.97438 * 6 5 4 8 8 C 1.38237 * 120.01050 * 359.97041 * 7 6 5 9 9 C 1.38308 * 119.98881 * 0.02562 * 8 7 6 10 10 Br 1.89102 * 120.00950 * 179.97438 * 9 8 7 11 11 C 1.38202 * 119.99296 * 269.72125 * 5 4 2 12 12 N 1.46506 * 109.47262 * 120.00338 * 2 1 3 13 13 C 1.36938 * 119.99589 * 275.00203 * 12 2 1 14 14 H 1.07999 * 120.00325 * 359.97438 * 13 12 2 15 15 C 1.38815 * 119.99817 * 180.02562 * 13 12 2 16 16 N 1.31621 * 119.99673 * 359.71804 * 15 13 12 17 17 Si 1.86795 * 120.00115 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47071 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47211 * 119.99797 * 17 15 13 20 20 H 1.48493 * 109.47327 * 239.99664 * 17 15 13 21 21 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 23 23 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 24 24 H 1.08995 * 109.46869 * 294.99887 * 4 2 1 25 25 H 1.09000 * 109.46715 * 55.00379 * 4 2 1 26 26 H 1.08001 * 119.98724 * 0.02562 * 6 5 4 27 27 H 1.08002 * 119.99324 * 179.97438 * 7 6 5 28 28 H 1.07994 * 120.00714 * 180.02562 * 8 7 6 29 29 H 1.08004 * 120.00642 * 0.02562 * 11 5 4 30 30 H 0.96999 * 120.00080 * 94.99693 * 12 2 1 31 31 H 0.97000 * 120.00043 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 6 4.3292 -1.5818 -0.7154 7 6 5.7068 -1.4851 -0.7736 8 6 6.2980 -0.4217 -1.4297 9 6 5.5109 0.5458 -2.0275 10 35 6.3191 2.0012 -2.9246 11 6 4.1321 0.4461 -1.9730 12 7 2.0184 -0.6907 1.1962 13 6 2.1491 -0.0076 2.3758 14 1 1.8926 1.0404 2.4242 15 6 2.6123 -0.6618 3.5090 16 7 2.9206 -1.9401 3.4511 17 14 2.7914 0.2701 5.1179 18 1 2.3774 1.6825 4.9206 19 1 1.9311 -0.3584 6.1525 20 1 4.2084 0.2273 5.5598 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.7517 -1.7715 -1.2056 25 1 1.6054 -0.2616 -2.1370 26 1 3.8676 -2.4135 -0.2038 27 1 6.3213 -2.2405 -0.3065 28 1 7.3744 -0.3463 -1.4756 29 1 3.5171 1.1991 -2.4432 30 1 2.2490 -1.6319 1.1526 31 1 3.2440 -2.3974 4.2430 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256175061.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:16 Heat of formation + Delta-G solvation = 24.357919 kcal Electronic energy + Delta-G solvation = -14613.832823 eV Core-core repulsion = 12134.118480 eV Total energy + Delta-G solvation = -2479.714343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.13146 -35.98080 -32.79660 -31.92245 -30.92913 -28.97862 -28.57682 -26.05954 -23.68116 -22.17958 -21.13407 -19.74474 -17.19531 -16.45637 -15.28329 -14.86357 -14.57684 -13.72740 -13.64517 -13.30519 -13.14098 -12.76996 -12.16725 -12.00014 -11.61841 -11.47048 -10.89102 -10.82080 -10.69381 -10.66174 -10.52304 -10.24034 -10.11828 -9.94988 -9.64476 -8.91597 -8.52002 -8.25410 -6.93373 -5.75560 -3.02488 1.48391 1.63627 1.81619 3.43805 3.50296 3.51636 3.98498 4.61016 5.02137 5.13748 5.35902 5.48442 5.57707 5.67353 5.73707 5.76294 5.93545 6.02359 6.19041 6.23243 6.34462 6.41965 6.49321 6.62784 6.72111 6.82628 6.99875 7.08314 7.20481 7.73034 8.43514 9.55196 10.11971 10.47238 11.47474 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.020368 B = 0.005286 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.346438 B = 5295.318467 C = 5716.172795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.175 3.825 3 H 0.048 0.952 4 C -0.089 4.089 5 C -0.053 4.053 6 C -0.072 4.072 7 C -0.111 4.111 8 C -0.104 4.104 9 C -0.091 4.091 10 Br -0.072 7.072 11 C -0.094 4.094 12 N -0.720 5.720 13 C -0.231 4.231 14 H 0.069 0.931 15 C -0.013 4.013 16 N -0.934 5.934 17 Si 0.902 3.098 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.293 1.293 21 H 0.046 0.954 22 H 0.054 0.946 23 H 0.036 0.964 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.382 0.618 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.205 3.862 -14.855 16.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.065 3.935 3 H 0.066 0.934 4 C -0.127 4.127 5 C -0.054 4.054 6 C -0.090 4.090 7 C -0.130 4.130 8 C -0.124 4.124 9 C -0.170 4.170 10 Br 0.014 6.986 11 C -0.114 4.114 12 N -0.362 5.362 13 C -0.363 4.363 14 H 0.087 0.913 15 C -0.209 4.209 16 N -0.583 5.583 17 Si 0.734 3.266 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.220 1.220 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.149 0.851 27 H 0.145 0.855 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.216 0.784 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.517 4.547 -15.053 16.664 hybrid contribution 0.053 -0.107 1.326 1.332 sum 5.571 4.439 -13.726 15.464 Atomic orbital electron populations 1.22438 0.99086 1.00886 1.00009 1.20229 0.91663 0.95529 0.86058 0.93442 1.20999 0.90263 1.02101 0.99329 1.19828 0.96252 0.93702 0.95580 1.21236 0.93342 0.98870 0.95596 1.21115 0.95249 0.97918 0.98679 1.20956 0.99372 0.93942 0.98144 1.21577 0.95088 0.95594 1.04733 1.96614 1.81986 1.43228 1.76818 1.20891 0.92345 0.98312 0.99853 1.42405 1.78035 1.10521 1.05219 1.19259 1.35882 0.93811 0.87299 0.91327 1.24670 1.02385 0.95951 0.97882 1.69649 1.51448 1.08494 1.28679 0.86183 0.77278 0.78875 0.84302 1.20641 1.21965 1.21986 0.93452 0.92719 0.94504 0.90911 0.91166 0.85150 0.85533 0.85820 0.85666 0.78380 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.49 37.16 0.35 -2.52 16 2 C 0.18 3.37 2.88 -67.92 -0.20 3.17 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.09 -1.40 4.89 -27.88 -0.14 -1.54 16 5 C -0.05 -0.87 4.95 -104.63 -0.52 -1.39 16 6 C -0.07 -1.23 9.10 -39.58 -0.36 -1.59 16 7 C -0.11 -1.74 10.05 -39.59 -0.40 -2.14 16 8 C -0.10 -1.56 9.79 -39.56 -0.39 -1.94 16 9 C -0.09 -1.38 6.22 -39.52 -0.25 -1.63 16 10 Br -0.07 -0.94 33.70 -68.01 -2.29 -3.23 16 11 C -0.09 -1.47 9.44 -39.55 -0.37 -1.84 16 12 N -0.72 -17.28 4.57 -53.42 -0.24 -17.52 16 13 C -0.23 -6.31 9.93 -15.06 -0.15 -6.46 16 14 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 17 Si 0.90 22.47 29.55 -169.99 -5.02 17.45 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 25 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 26 H 0.13 2.31 7.57 -52.49 -0.40 1.91 16 27 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 28 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 29 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 30 H 0.38 9.61 7.02 -40.82 -0.29 9.33 16 31 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 288.03 15.07 4.34 4.34 Total: -1.00 -29.10 288.03 -9.03 -38.13 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.03 Total: 6.01 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -2.51 Total: -18.35 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.48 Total: -44.34 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 35 Polarization: -0.94 SS G_CDS: -2.29 Total: -3.23 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.10 -9.03 -38.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256175061.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.487 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds