Wall clock time and date at job start Tue Mar 31 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46913 * 2 1 4 4 C 1.52997 * 109.47566 * 120.00039 * 2 1 3 5 5 C 1.50696 * 109.47772 * 185.00007 * 4 2 1 6 6 C 1.38264 * 119.99353 * 89.99949 * 5 4 2 7 7 C 1.38221 * 120.01738 * 180.02562 * 6 5 4 8 8 C 1.38237 * 120.01152 * 0.02562 * 7 6 5 9 9 C 1.38305 * 119.99158 * 359.97438 * 8 7 6 10 10 Br 1.89094 * 120.01155 * 179.72512 * 9 8 7 11 11 C 1.38202 * 119.99386 * 270.00262 * 5 4 2 12 12 N 1.46497 * 109.47229 * 240.00453 * 2 1 3 13 13 C 1.36935 * 120.00499 * 84.99570 * 12 2 1 14 14 H 1.08006 * 119.99686 * 0.02562 * 13 12 2 15 15 C 1.38813 * 120.00506 * 180.02562 * 13 12 2 16 16 N 1.31621 * 119.99660 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00133 * 179.97438 * 15 13 12 18 18 H 1.48510 * 109.47065 * 90.00286 * 17 15 13 19 19 H 1.48500 * 109.47297 * 210.00112 * 17 15 13 20 20 H 1.48498 * 109.47535 * 330.00401 * 17 15 13 21 21 H 1.08997 * 109.46829 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47042 * 299.99985 * 1 2 3 23 23 H 1.08999 * 109.47083 * 59.99834 * 1 2 3 24 24 H 1.09009 * 109.47043 * 64.99758 * 4 2 1 25 25 H 1.08999 * 109.47089 * 305.00599 * 4 2 1 26 26 H 1.07996 * 119.98815 * 0.02562 * 6 5 4 27 27 H 1.08002 * 119.99584 * 179.97438 * 7 6 5 28 28 H 1.07997 * 120.00777 * 180.02562 * 8 7 6 29 29 H 1.08001 * 120.00205 * 0.02562 * 11 5 4 30 30 H 0.97008 * 119.99584 * 265.00326 * 12 2 1 31 31 H 0.97000 * 120.00087 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3127 6 6 4.1324 0.4495 1.9684 7 6 5.5099 0.5478 2.0265 8 6 6.2978 -0.4179 1.4286 9 6 5.7076 -1.4828 0.7725 10 35 6.7848 -2.8000 -0.0523 11 6 4.3288 -1.5814 0.7155 12 7 2.0183 -0.6905 -1.1962 13 6 2.1491 -0.0074 -2.3758 14 1 1.8925 1.0406 -2.4241 15 6 2.6113 -0.6618 -3.5093 16 7 2.9235 -1.9391 -3.4505 17 14 2.7889 0.2699 -5.1185 18 1 4.1512 0.8550 -5.2040 19 1 2.5781 -0.6615 -6.2557 20 1 1.7789 1.3570 -5.1753 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.7517 -1.7716 1.2055 25 1 1.6054 -0.2618 2.1369 26 1 3.5171 1.2044 2.4353 27 1 5.9707 1.3797 2.5385 28 1 7.3741 -0.3413 1.4744 29 1 3.8675 -2.4125 0.2029 30 1 2.2490 -1.6317 -1.1526 31 1 3.2461 -2.3966 -4.2427 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256175066.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:20 Heat of formation + Delta-G solvation = 25.672302 kcal Electronic energy + Delta-G solvation = -14707.152320 eV Core-core repulsion = 12227.494973 eV Total energy + Delta-G solvation = -2479.657347 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.11280 -35.95226 -32.78315 -31.79613 -30.86920 -28.99559 -28.44351 -26.04997 -23.65423 -22.10338 -21.19141 -19.67916 -17.17121 -16.44230 -15.25256 -14.83876 -14.57217 -13.69500 -13.60227 -13.29427 -13.12310 -12.70110 -12.13295 -11.97297 -11.62301 -11.42442 -10.86262 -10.79452 -10.65907 -10.59042 -10.44837 -10.23257 -9.96008 -9.85459 -9.60356 -8.86718 -8.42248 -8.25104 -6.89440 -5.70282 -2.97903 1.47505 1.68387 2.02986 3.46928 3.52119 3.53360 3.98156 4.64264 5.05267 5.10947 5.34796 5.48686 5.57709 5.63438 5.76605 5.81996 5.90531 6.05679 6.19953 6.26560 6.34179 6.45767 6.56573 6.60300 6.69031 6.82476 6.95062 7.10624 7.20966 7.75745 8.47821 9.59338 10.16074 10.51075 11.52167 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.014572 B = 0.007832 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.999014 B = 3574.214371 C = 4841.049799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.176 3.824 3 H 0.047 0.953 4 C -0.089 4.089 5 C -0.054 4.054 6 C -0.109 4.109 7 C -0.121 4.121 8 C -0.106 4.106 9 C -0.082 4.082 10 Br -0.061 7.061 11 C -0.059 4.059 12 N -0.720 5.720 13 C -0.235 4.235 14 H 0.067 0.933 15 C -0.010 4.010 16 N -0.929 5.929 17 Si 0.901 3.099 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.283 1.283 21 H 0.046 0.954 22 H 0.035 0.965 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.134 0.866 30 H 0.382 0.618 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.586 0.637 12.838 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.066 3.934 3 H 0.065 0.935 4 C -0.127 4.127 5 C -0.055 4.055 6 C -0.127 4.127 7 C -0.140 4.140 8 C -0.126 4.126 9 C -0.161 4.161 10 Br 0.025 6.975 11 C -0.079 4.079 12 N -0.362 5.362 13 C -0.367 4.367 14 H 0.085 0.915 15 C -0.207 4.207 16 N -0.577 5.577 17 Si 0.732 3.268 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.209 1.209 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.151 0.849 30 H 0.216 0.784 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.001 0.254 12.374 13.754 hybrid contribution -0.007 0.515 -0.953 1.083 sum 5.994 0.769 11.421 12.921 Atomic orbital electron populations 1.22442 0.99147 1.00878 0.99951 1.20216 0.91641 0.95482 0.86090 0.93486 1.21002 0.90278 1.02096 0.99348 1.19834 0.96102 0.93813 0.95711 1.21087 0.94690 0.97583 0.99343 1.20978 0.93766 0.98642 1.00583 1.20949 0.99807 0.93645 0.98229 1.21705 0.94487 0.96729 1.03220 1.96654 1.67748 1.52462 1.80683 1.21044 0.91108 0.99552 0.96222 1.42397 1.78051 1.10527 1.05219 1.19169 1.36483 0.93722 0.87299 0.91466 1.24669 1.02250 0.95930 0.97803 1.69638 1.50877 1.08465 1.28728 0.86284 0.77744 0.78650 0.84086 1.21836 1.21873 1.20920 0.93469 0.94560 0.92726 0.91048 0.91096 0.86001 0.85874 0.85851 0.84857 0.78374 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.49 37.16 0.35 -2.53 16 2 C 0.18 3.39 2.88 -67.93 -0.20 3.20 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.09 -1.42 4.89 -27.89 -0.14 -1.55 16 5 C -0.05 -0.90 4.95 -104.63 -0.52 -1.41 16 6 C -0.11 -1.59 9.70 -39.58 -0.38 -1.97 16 7 C -0.12 -1.67 10.05 -39.59 -0.40 -2.06 16 8 C -0.11 -1.60 9.79 -39.56 -0.39 -1.99 16 9 C -0.08 -1.42 6.22 -39.52 -0.25 -1.66 16 10 Br -0.06 -1.01 33.70 -68.01 -2.29 -3.30 16 11 C -0.06 -1.09 8.84 -39.55 -0.35 -1.44 16 12 N -0.72 -17.54 4.57 -53.43 -0.24 -17.79 16 13 C -0.24 -6.49 9.93 -15.06 -0.15 -6.63 16 14 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 15 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 16 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 17 Si 0.90 22.70 29.55 -169.99 -5.02 17.68 16 18 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.07 1.13 8.09 -51.92 -0.42 0.71 16 25 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 26 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.13 2.62 7.57 -52.49 -0.40 2.22 16 30 H 0.38 9.86 7.02 -40.82 -0.29 9.58 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 288.02 15.07 4.34 4.34 Total: -1.00 -29.81 288.02 -9.03 -38.83 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.03 Total: 5.76 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -2.51 Total: -18.45 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.48 Total: -44.87 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -2.29 Total: -3.30 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.81 -9.03 -38.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256175066.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.507 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds