Wall clock time and date at job start Tue Mar 31 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.50702 * 109.47006 * 184.99905 * 4 2 1 6 6 C 1.38239 * 120.00345 * 264.72973 * 5 4 2 7 7 C 1.38226 * 120.00673 * 179.72170 * 6 5 4 8 8 C 1.38257 * 120.01939 * 0.54978 * 7 6 5 9 9 C 1.38202 * 120.01109 * 359.72284 * 8 7 6 10 10 C 1.38305 * 120.00493 * 84.99957 * 5 4 2 11 11 Br 1.89101 * 120.01036 * 359.97438 * 10 5 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.36943 * 119.99752 * 84.72207 * 12 2 1 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 2 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 2 16 16 N 1.31611 * 120.00081 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47483 * 90.00178 * 17 15 13 19 19 H 1.48498 * 109.47011 * 210.00042 * 17 15 13 20 20 H 1.48502 * 109.47495 * 329.99664 * 17 15 13 21 21 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 22 22 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 23 23 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 25 25 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 26 26 H 1.08000 * 120.00076 * 359.97438 * 6 5 4 27 27 H 1.07994 * 119.98787 * 180.25176 * 7 6 5 28 28 H 1.08003 * 119.99494 * 179.74268 * 8 7 6 29 29 H 1.08000 * 120.00057 * 180.02562 * 9 8 7 30 30 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 31 31 H 0.97008 * 120.00329 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.3289 -1.6350 0.8116 7 6 5.7065 -1.5350 0.8646 8 6 6.2979 -0.4199 1.4289 9 6 5.5118 0.5978 1.9352 10 6 4.1331 0.5007 1.8773 11 35 3.0570 1.8933 2.5692 12 7 2.0184 -0.6906 -1.1962 13 6 2.1437 -0.0088 -2.3771 14 1 1.8868 1.0391 -2.4256 15 6 2.6010 -0.6645 -3.5120 16 7 2.7220 -0.0091 -4.6468 17 14 3.0446 -2.4771 -3.4283 18 1 1.8455 -3.2952 -3.7415 19 1 4.1155 -2.7706 -4.4143 20 1 3.5256 -2.8065 -2.0625 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.6054 -0.2618 2.1369 25 1 1.7517 -1.7715 1.2056 26 1 3.8674 -2.5084 0.3750 27 1 6.3211 -2.3302 0.4694 28 1 7.3743 -0.3441 1.4738 29 1 5.9740 1.4689 2.3756 30 1 2.2490 -1.6318 -1.1527 31 1 3.0419 -0.4672 -5.4398 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256825863.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:26 Heat of formation + Delta-G solvation = 13.706695 kcal Electronic energy + Delta-G solvation = -14906.014861 eV Core-core repulsion = 12425.838646 eV Total energy + Delta-G solvation = -2480.176215 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43521 -37.71982 -34.61576 -33.28199 -32.55818 -30.99100 -30.11357 -27.32471 -25.39989 -23.40977 -22.56256 -21.41936 -19.64844 -17.61729 -17.01443 -16.23471 -16.17681 -15.74728 -15.03168 -14.80556 -14.42234 -14.32771 -13.96919 -13.59790 -13.19899 -12.88144 -12.85233 -12.47838 -12.23818 -12.02600 -11.94300 -11.84628 -11.75725 -11.51995 -11.05765 -10.91906 -9.74308 -9.51358 -9.25628 -7.97377 -5.28993 0.21226 0.40988 0.72649 1.36379 1.41418 1.48466 2.51723 2.72307 3.34410 3.61768 3.78918 3.91616 4.10504 4.24524 4.40594 4.46163 4.54576 4.66277 4.77604 4.86868 4.97087 5.00637 5.11271 5.28032 5.32299 5.48248 5.56764 5.57405 5.82787 5.95445 6.26121 7.13547 7.89694 8.10376 9.24819 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.020360 B = 0.007690 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.908621 B = 3640.135638 C = 4335.246303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.178 3.822 3 H 0.041 0.959 4 C -0.091 4.091 5 C -0.050 4.050 6 C -0.121 4.121 7 C -0.111 4.111 8 C -0.124 4.124 9 C -0.099 4.099 10 C -0.107 4.107 11 Br -0.051 7.051 12 N -0.744 5.744 13 C -0.215 4.215 14 H 0.050 0.950 15 C -0.068 4.068 16 N -0.989 5.989 17 Si 0.949 3.051 18 H -0.282 1.282 19 H -0.301 1.301 20 H -0.242 1.242 21 H 0.071 0.929 22 H 0.032 0.968 23 H 0.056 0.944 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.145 0.855 28 H 0.157 0.843 29 H 0.146 0.854 30 H 0.364 0.636 31 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 -1.524 19.718 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.070 3.930 3 H 0.059 0.941 4 C -0.129 4.129 5 C -0.052 4.052 6 C -0.140 4.140 7 C -0.129 4.129 8 C -0.143 4.143 9 C -0.119 4.119 10 C -0.186 4.186 11 Br 0.034 6.966 12 N -0.388 5.388 13 C -0.347 4.347 14 H 0.068 0.932 15 C -0.258 4.258 16 N -0.640 5.640 17 Si 0.777 3.223 18 H -0.209 1.209 19 H -0.228 1.228 20 H -0.166 1.166 21 H 0.090 0.910 22 H 0.051 0.949 23 H 0.075 0.925 24 H 0.117 0.883 25 H 0.103 0.897 26 H 0.143 0.857 27 H 0.163 0.837 28 H 0.175 0.825 29 H 0.164 0.836 30 H 0.198 0.802 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.784 -0.809 19.874 20.247 hybrid contribution 0.403 -1.049 -0.986 1.495 sum 4.187 -1.858 18.887 19.435 Atomic orbital electron populations 1.22276 0.96994 1.01612 1.00809 1.20326 0.92854 0.95174 0.84637 0.94101 1.21083 0.90286 1.02599 0.98950 1.19833 0.96754 0.92965 0.95642 1.21223 0.94551 0.99002 0.99244 1.21575 0.94647 0.99023 0.97629 1.21437 1.01272 0.93186 0.98368 1.21340 0.91189 1.00078 0.99278 1.21869 0.95060 0.94953 1.06709 1.96603 1.69140 1.46339 1.84469 1.42724 1.79888 1.09509 1.06707 1.18951 1.34434 0.94119 0.87161 0.93211 1.25446 1.02767 1.02471 0.95131 1.69894 1.55422 1.37657 1.01045 0.85491 0.77518 0.80908 0.78395 1.20896 1.22769 1.16595 0.90987 0.94924 0.92529 0.88267 0.89685 0.85703 0.83706 0.82540 0.83582 0.80227 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.33 9.49 71.98 0.68 -4.65 16 2 C 0.18 6.70 2.86 44.99 0.13 6.83 16 3 H 0.04 1.71 7.62 -2.39 -0.02 1.69 16 4 C -0.09 -2.74 4.33 29.85 0.13 -2.61 16 5 C -0.05 -1.57 4.89 -19.85 -0.10 -1.66 16 6 C -0.12 -3.69 9.38 22.27 0.21 -3.48 16 7 C -0.11 -2.90 10.05 22.27 0.22 -2.68 16 8 C -0.12 -2.95 10.05 22.27 0.22 -2.73 16 9 C -0.10 -2.57 9.79 22.29 0.22 -2.35 16 10 C -0.11 -3.16 6.22 22.31 0.14 -3.02 16 11 Br -0.05 -1.37 31.42 -20.37 -0.64 -2.01 16 12 N -0.74 -34.17 4.53 -322.94 -1.46 -35.63 16 13 C -0.22 -12.33 10.41 84.03 0.87 -11.46 16 14 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 15 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 16 N -0.99 -64.37 13.97 21.65 0.30 -64.07 16 17 Si 0.95 45.29 27.74 68.60 1.90 47.19 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 20 H -0.24 -10.02 6.52 99.48 0.65 -9.37 16 21 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 22 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 23 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.10 2.60 6.89 -2.39 -0.02 2.58 16 25 H 0.08 2.32 8.05 -2.39 -0.02 2.30 16 26 H 0.13 3.69 8.03 -2.91 -0.02 3.66 16 27 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 28 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.36 15.85 5.46 -92.71 -0.51 15.35 16 31 H 0.25 15.85 8.31 -92.70 -0.77 15.08 16 Total: -1.00 -68.09 282.36 3.86 -64.23 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.56 Total: 21.63 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 3.20 Total: -31.34 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -1.16 Total: -99.70 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Atomic # 35 Polarization: -1.37 SS G_CDS: -0.64 Total: -2.01 kcal Total: -68.09 3.86 -64.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256825863.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.938 kcal (2) G-P(sol) polarization free energy of solvation -68.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds