Wall clock time and date at job start Tue Mar 31 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47077 * 2 1 4 4 C 1.53005 * 109.47322 * 240.00304 * 2 1 3 5 5 C 1.50697 * 109.47166 * 174.99844 * 4 2 1 6 6 C 1.38244 * 119.98967 * 90.00010 * 5 4 2 7 7 C 1.38217 * 120.01084 * 180.02562 * 6 5 4 8 8 C 1.38324 * 119.98860 * 0.25885 * 7 6 5 9 9 Br 1.89097 * 120.00911 * 179.72004 * 8 7 6 10 10 C 1.38329 * 119.97985 * 359.42088 * 8 7 6 11 11 C 1.38219 * 119.98967 * 0.59782 * 10 8 7 12 12 N 1.46495 * 109.47124 * 120.00096 * 2 1 3 13 13 C 1.36932 * 120.00077 * 275.00069 * 12 2 1 14 14 H 1.08001 * 120.00395 * 359.97438 * 13 12 2 15 15 C 1.38816 * 120.00207 * 180.02562 * 13 12 2 16 16 N 1.31622 * 119.99576 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00311 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46898 * 89.99888 * 17 15 13 19 19 H 1.48498 * 109.47103 * 209.99881 * 17 15 13 20 20 H 1.48500 * 109.47014 * 329.99797 * 17 15 13 21 21 H 1.08998 * 109.47024 * 300.00175 * 1 2 3 22 22 H 1.09011 * 109.46773 * 59.99837 * 1 2 3 23 23 H 1.08997 * 109.47076 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46991 * 55.00111 * 4 2 1 25 25 H 1.08997 * 109.47083 * 295.00471 * 4 2 1 26 26 H 1.07999 * 119.99331 * 0.02562 * 6 5 4 27 27 H 1.08002 * 120.00169 * 179.97438 * 7 6 5 28 28 H 1.07998 * 120.00546 * 180.29758 * 10 8 7 29 29 H 1.08001 * 119.99446 * 179.67830 * 11 10 8 30 30 H 0.96997 * 119.99865 * 95.00329 * 12 2 1 31 31 H 0.97004 * 120.00000 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 6 4.3290 -1.5816 -0.7154 7 6 5.7066 -1.4842 -0.7729 8 6 6.2976 -0.4163 -1.4236 9 35 8.1821 -0.2782 -1.4958 10 6 5.5097 0.5474 -2.0269 11 6 4.1322 0.4494 -1.9686 12 7 2.0183 -0.6906 1.1961 13 6 2.1491 -0.0075 2.3757 14 1 1.8926 1.0405 2.4242 15 6 2.6123 -0.6618 3.5090 16 7 2.9253 -1.9389 3.4498 17 14 2.7900 0.2698 5.1183 18 1 1.5223 0.1775 5.8863 19 1 3.8951 -0.3228 5.9138 20 1 3.0939 1.6953 4.8340 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.6055 -0.2616 -2.1370 25 1 1.7517 -1.7714 -1.2057 26 1 3.8674 -2.4132 -0.2037 27 1 6.3213 -2.2394 -0.3057 28 1 5.9707 1.3789 -2.5393 29 1 3.5169 1.2045 -2.4352 30 1 2.2490 -1.6317 1.1525 31 1 3.2487 -2.3962 4.2418 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257556053.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:29 Heat of formation + Delta-G solvation = 24.469433 kcal Electronic energy + Delta-G solvation = -14593.781997 eV Core-core repulsion = 12114.072489 eV Total energy + Delta-G solvation = -2479.709508 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.12802 -35.99540 -32.90271 -31.65485 -30.71311 -29.68160 -28.43317 -25.64747 -23.65729 -22.48433 -21.07314 -19.75676 -17.21215 -16.30344 -15.28461 -14.89931 -14.59697 -13.72686 -13.63200 -13.30158 -13.17419 -12.76394 -12.18660 -11.98745 -11.65805 -11.46486 -10.87917 -10.85643 -10.72010 -10.60556 -10.46505 -10.22192 -10.10116 -9.93375 -9.63586 -8.90542 -8.65064 -8.16262 -6.93245 -5.74815 -3.02016 1.45060 1.68062 1.85972 3.44590 3.50400 3.51443 3.98008 4.61377 5.03799 5.18684 5.20636 5.46057 5.58316 5.68313 5.74845 5.80506 5.94541 6.04387 6.17137 6.28192 6.32885 6.40172 6.51424 6.60328 6.65599 6.81497 6.99701 7.08547 7.20889 7.72559 8.44017 9.55647 10.12325 10.47428 11.48004 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.005707 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.209952 B = 4905.413887 C = 6011.530946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.176 3.824 3 H 0.047 0.953 4 C -0.092 4.092 5 C -0.042 4.042 6 C -0.083 4.083 7 C -0.086 4.086 8 C -0.098 4.098 9 Br -0.072 7.072 10 C -0.097 4.097 11 C -0.118 4.118 12 N -0.720 5.720 13 C -0.233 4.233 14 H 0.068 0.932 15 C -0.012 4.012 16 N -0.933 5.933 17 Si 0.902 3.098 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.283 1.283 21 H 0.054 0.946 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.133 0.867 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.382 0.618 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.415 2.390 -13.901 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.066 3.934 3 H 0.066 0.934 4 C -0.130 4.130 5 C -0.042 4.042 6 C -0.102 4.102 7 C -0.106 4.106 8 C -0.177 4.177 9 Br 0.013 6.987 10 C -0.117 4.117 11 C -0.137 4.137 12 N -0.362 5.362 13 C -0.365 4.365 14 H 0.086 0.914 15 C -0.208 4.208 16 N -0.581 5.581 17 Si 0.734 3.266 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.209 1.209 21 H 0.073 0.927 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.151 0.849 27 H 0.145 0.855 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.216 0.784 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.149 2.570 -13.784 15.739 hybrid contribution -0.202 0.181 1.151 1.183 sum 6.947 2.751 -12.632 14.677 Atomic orbital electron populations 1.22443 0.99107 1.00891 0.99985 1.20216 0.91650 0.95505 0.86039 0.93450 1.21034 0.90464 1.02125 0.99344 1.19982 0.96254 0.93590 0.94392 1.21096 0.92460 0.99580 0.97053 1.21058 0.95423 0.96702 0.97448 1.21607 0.89080 1.00341 1.06716 1.96612 1.05453 1.98459 1.98168 1.20919 0.93645 0.97725 0.99371 1.20957 0.93812 0.98245 1.00710 1.42394 1.78052 1.10536 1.05207 1.19198 1.36161 0.93787 0.87311 0.91401 1.24673 1.02281 0.95968 0.97882 1.69639 1.51174 1.08593 1.28738 0.86257 0.77242 0.78896 0.84236 1.21839 1.21841 1.20865 0.92723 0.94525 0.93458 0.91118 0.90961 0.84915 0.85506 0.85791 0.85719 0.78367 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.18 3.34 2.88 -67.93 -0.20 3.15 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.09 -1.42 4.89 -27.88 -0.14 -1.56 16 5 C -0.04 -0.68 4.95 -104.62 -0.52 -1.20 16 6 C -0.08 -1.44 9.09 -39.59 -0.36 -1.80 16 7 C -0.09 -1.43 9.79 -39.56 -0.39 -1.82 16 8 C -0.10 -1.53 6.22 -39.52 -0.25 -1.78 16 9 Br -0.07 -0.99 33.70 -68.01 -2.29 -3.28 16 10 C -0.10 -1.41 9.79 -39.55 -0.39 -1.80 16 11 C -0.12 -1.75 9.70 -39.59 -0.38 -2.13 16 12 N -0.72 -17.25 4.57 -53.42 -0.24 -17.49 16 13 C -0.23 -6.36 9.93 -15.06 -0.15 -6.51 16 14 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 17 Si 0.90 22.51 29.55 -169.99 -5.02 17.48 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 25 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 26 H 0.13 2.39 7.57 -52.49 -0.40 1.99 16 27 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.38 9.63 7.02 -40.82 -0.29 9.35 16 31 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 288.03 15.07 4.34 4.34 Total: -1.00 -29.16 288.03 -9.03 -38.19 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.03 Total: 5.99 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -2.51 Total: -18.38 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.48 Total: -44.35 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 35 Polarization: -0.99 SS G_CDS: -2.29 Total: -3.28 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.16 -9.03 -38.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257556053.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.662 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds