Wall clock time and date at job start Tue Mar 31 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 C 1.38247 * 119.98973 * 269.72486 * 5 4 2 7 7 C 1.38221 * 120.00937 * 179.76583 * 6 5 4 8 8 C 1.38322 * 119.98789 * 0.50880 * 7 6 5 9 9 Br 1.89101 * 120.01021 * 179.72628 * 8 7 6 10 10 C 1.38326 * 119.98303 * 359.74458 * 8 7 6 11 11 C 1.38217 * 119.98757 * 0.02562 * 10 8 7 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.36939 * 119.99792 * 84.99599 * 12 2 1 14 14 H 1.08001 * 119.99680 * 0.02562 * 13 12 2 15 15 C 1.38809 * 119.99850 * 179.97438 * 13 12 2 16 16 N 1.31627 * 119.99799 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00165 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47258 * 89.99481 * 17 15 13 19 19 H 1.48497 * 109.47471 * 209.99641 * 17 15 13 20 20 H 1.48497 * 109.47336 * 329.99634 * 17 15 13 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 25 25 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 26 26 H 1.07995 * 119.99323 * 0.02562 * 6 5 4 27 27 H 1.08001 * 120.00300 * 180.24005 * 7 6 5 28 28 H 1.08005 * 120.00633 * 180.02562 * 10 8 7 29 29 H 1.07999 * 119.99490 * 179.97438 * 11 10 8 30 30 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 31 31 H 0.97005 * 119.99350 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 6 4.3290 -1.5847 0.7204 7 6 5.7065 -1.4850 0.7742 8 6 6.2975 -0.4202 1.4301 9 35 8.1821 -0.2873 1.5108 10 6 5.5096 0.5473 2.0273 11 6 4.1322 0.4493 1.9688 12 7 2.0184 -0.6906 -1.1961 13 6 2.1491 -0.0075 -2.3757 14 1 1.8925 1.0404 -2.4241 15 6 2.6124 -0.6618 -3.5089 16 7 2.7385 -0.0050 -4.6426 17 14 3.0568 -2.4741 -3.4250 18 1 1.8598 -3.2927 -3.7448 19 1 4.1326 -2.7660 -4.4061 20 1 3.5314 -2.8047 -2.0572 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.6054 -0.2617 2.1370 25 1 1.7517 -1.7714 1.2056 26 1 3.8674 -2.4182 0.2118 27 1 6.3213 -2.2408 0.3080 28 1 5.9707 1.3791 2.5391 29 1 3.5169 1.2043 2.4353 30 1 2.2490 -1.6317 -1.1525 31 1 3.0619 -0.4624 -5.4346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257556054.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:33 Heat of formation + Delta-G solvation = 28.611237 kcal Electronic energy + Delta-G solvation = -14671.694269 eV Core-core repulsion = 12192.164364 eV Total energy + Delta-G solvation = -2479.529906 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.27943 -36.20068 -32.96466 -31.74706 -30.86791 -29.99301 -28.91365 -25.76484 -23.38618 -22.63193 -21.14755 -19.93527 -17.61940 -16.44826 -15.47293 -15.03570 -14.63041 -14.09360 -13.50071 -13.44308 -13.26717 -12.72960 -12.39989 -12.27755 -11.84799 -11.64200 -11.05656 -10.94566 -10.78602 -10.68859 -10.62664 -10.29114 -10.19061 -10.00284 -9.57431 -8.94462 -8.79859 -8.28940 -7.25552 -5.75207 -3.09997 1.31687 1.53363 1.75716 3.33999 3.37665 3.44903 3.83462 4.59409 4.90166 5.02817 5.07381 5.22092 5.52305 5.53580 5.59543 5.61401 5.79838 5.86261 6.04669 6.15133 6.18218 6.27283 6.37965 6.41929 6.47495 6.70980 6.85786 6.97181 7.06087 8.00791 8.43640 9.22126 9.94605 10.14202 11.43487 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.006019 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.805422 B = 4650.487686 C = 5576.617192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.182 3.818 3 H 0.056 0.944 4 C -0.095 4.095 5 C -0.041 4.041 6 C -0.096 4.096 7 C -0.088 4.088 8 C -0.098 4.098 9 Br -0.068 7.068 10 C -0.092 4.092 11 C -0.115 4.115 12 N -0.745 5.745 13 C -0.237 4.237 14 H 0.089 0.911 15 C 0.004 3.996 16 N -0.935 5.935 17 Si 0.881 3.119 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.276 1.276 21 H 0.045 0.955 22 H 0.059 0.941 23 H 0.039 0.961 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.359 0.641 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.830 -1.713 16.941 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.072 3.928 3 H 0.074 0.926 4 C -0.133 4.133 5 C -0.041 4.041 6 C -0.115 4.115 7 C -0.108 4.108 8 C -0.177 4.177 9 Br 0.017 6.983 10 C -0.112 4.112 11 C -0.134 4.134 12 N -0.388 5.388 13 C -0.367 4.367 14 H 0.107 0.893 15 C -0.191 4.191 16 N -0.583 5.583 17 Si 0.712 3.288 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.202 1.202 21 H 0.064 0.936 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.192 0.808 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.555 -1.478 16.784 18.465 hybrid contribution -0.016 -1.319 -0.320 1.357 sum 7.538 -2.796 16.463 18.322 Atomic orbital electron populations 1.22411 0.98550 1.00925 1.00568 1.20186 0.91850 0.95792 0.84959 0.92555 1.21078 0.90465 1.02051 0.99678 1.19975 0.96236 0.93573 0.94349 1.21071 0.92663 0.99613 0.98153 1.21039 0.95273 0.96851 0.97595 1.21620 0.89369 1.00221 1.06478 1.96634 1.05053 1.98488 1.98097 1.20971 0.93645 0.97559 0.98991 1.20982 0.93871 0.98151 1.00389 1.42766 1.79649 1.09305 1.07098 1.19045 1.36619 0.95549 0.85505 0.89312 1.24641 1.01539 0.97317 0.95613 1.69701 1.52881 1.35455 1.00268 0.86618 0.78083 0.87127 0.77005 1.21267 1.21833 1.20241 0.93564 0.92207 0.94157 0.90608 0.91084 0.85525 0.85541 0.85512 0.85417 0.80820 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.49 37.16 0.35 -2.36 16 2 C 0.18 3.29 2.88 -67.93 -0.20 3.10 16 3 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 4 C -0.09 -1.37 4.89 -27.89 -0.14 -1.51 16 5 C -0.04 -0.63 4.95 -104.62 -0.52 -1.15 16 6 C -0.10 -1.58 9.10 -39.58 -0.36 -1.94 16 7 C -0.09 -1.38 9.79 -39.56 -0.39 -1.77 16 8 C -0.10 -1.46 6.22 -39.52 -0.25 -1.70 16 9 Br -0.07 -0.89 33.70 -68.01 -2.29 -3.19 16 10 C -0.09 -1.28 9.79 -39.56 -0.39 -1.66 16 11 C -0.12 -1.61 9.70 -39.59 -0.38 -1.99 16 12 N -0.74 -16.86 4.38 -53.43 -0.23 -17.09 16 13 C -0.24 -6.57 10.41 -15.06 -0.16 -6.72 16 14 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 15 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 16 N -0.93 -29.43 13.97 55.49 0.78 -28.65 16 17 Si 0.88 21.92 27.74 -169.99 -4.71 17.21 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 20 H -0.28 -6.26 6.24 56.52 0.35 -5.91 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 25 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 26 H 0.13 2.09 7.31 -52.49 -0.38 1.71 16 27 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 29 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.36 7.96 4.91 -40.82 -0.20 7.76 16 31 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 284.41 15.07 4.29 4.29 Total: -1.00 -30.60 284.41 -8.68 -39.29 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -3.99 Total: 5.83 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.51 Total: -17.67 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.54 Total: -45.75 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -2.29 Total: -3.19 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.60 -8.68 -39.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257556054.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.896 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds